Definition Nostoc sp. PCC 7120, complete genome.
Accession NC_003272
Length 6,413,771

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The map label for this gene is cshA [H]

Identifier: 17228718

GI number: 17228718

Start: 1443660

End: 1445201

Strand: Direct

Name: cshA [H]

Synonym: alr1223

Alternate gene names: 17228718

Gene position: 1443660-1445201 (Clockwise)

Preceding gene: 17228717

Following gene: 17228719

Centisome position: 22.51

GC content: 47.8

Gene sequence:

>1542_bases
ATGAACTTATCGTTTCCCGAACTAGGAATTTCCCAAGAACGCGTAGAACACTTAGAAAAACTTGGTTTTACTGCACCAAC
AAACATTCAAGCCCAAGCTATCCCCCAACTGTTGTCAGGACGGGATGTAGTTGGTCAATCACAAACAGGTACAGGTAAAA
CAGCAGCATTTTCACTGCCAATTTTAGAGCGATTAGATCCTCAACAAAAAGCAGTACAAGCCATAGTTTTAACCCCAACC
CGCGAATTAGCAATCCAAGTCCACGATGCAATGGCGCAATTCGTTGGTAACAGTGGATTACGGACTTTAGCAATTTACGG
TGGTCAATCAATTGACCGTCAAATGCTACAACTCAAACGCGGCGTGCATATCGTCGTCGGTACACCAGGGCGAGTAATTG
ACCTACTAGAACGGGGTAACCTGAAGCTAGATCAAGTCAAGTGGTTTGTTTTGGATGAAGCCGATGAAATGTTAAGCATG
GGCTTTATCGACGATGTGGAGAAAATTCTTTCTCAAGCACCCCAAGACCGTCAGACAGCTTTATTCTCAGCTACCATGCC
ACCATCAATTCGGATGTTGGTCAACAAGTTTTTGCGATCGCCCGTCACAGTCACCGTCGAGCAGCCAAAAGCCACCCCCA
ATAAAATCAATCAGGTAGCTTATCTCATCCCCCGTCACTGGACAAAAGCCAGAGCCTTACAGCCAATTCTGGAAATGGAA
GATCCAGAAACAGCTTTAATCTTTGTCCGCACCAGACGTACAGCCGCCGAACTCACCAGCCAACTGCAAGCAGCCGGTCA
CAGTGTAGACGAATATCATGGTGACCTGTCCCAACAAGCACGGGAACGGTTATTAACTCGGTTCCGCAGCCGTCAAGTTC
GCTGGGTAGTAGCAACTGACATTGCTGCACGGGGTTTAGATGTCGATCAACTATCTCATGTGATCAACTACGACCTACCC
GATAGCGTCGAAACCTACGTCCACCGGATCGGTCGTACTGGTCGTGCTGGTAAAGAAGGTACAGCAATTACCTTAGTACA
ACCCTTTGAGCGTCGCAAACAGCAAATTTTCGAGCGTCATGTCCGCCAAAATTGGCAATTGCTTTCCATTCCCACACGGG
CGCAAATCGAAGCACGCCACATCCTGAAATTGCAAGAGCAAGTCAGAGAAGCCTTAGCTGGTGAGCGTTTAGCTTCCTTC
TTACCCATTGTCAGCGAATTGATCGAAAAATATGATGCTCAAGCGATCGCCGCAGCAGCGCTACAAATCGCTTACGATCA
AACTCGTCCTGCTTGGTTAAGTACAGATGCCGAGATTCCCGAAGAAGTCGCATCTACTCCTAAACCCAAACTAGGCGGTA
AGCGTCGTGAGTTTTCCGGTGACAGAGGTCGTTCCAATTGGAACAAATCTGACAATAACAACAGCGACGACGAAAGACGC
GGTACTCCCAAACCAAAATTACGGACTGGCCGTCGTGAAACTTCCGCTACACCTAGCAATCCTAAGTTGGGTTCACCTGC
TGCTAGAGAATCAGCTTCTTAG

Upstream 100 bases:

>100_bases
CCTGTTTGGTCAAGTTGTCAGTCATAACTGATAGCTGATCAGTAGTACAACGTTTCGGTTTACAAGTCTAAAAGTAAAAA
AGCAAAATCTAGGAGAGTTG

Downstream 100 bases:

>100_bases
TCATTAGTCATAAGACTTTGAACTTAGCTAAGATAGCTAACTGTTTTGATCAGCTTGTAGGAACATAGATATAAATGGAT
TATTTCTCATCTTATGTTCA

Product: ATP-dependent RNA helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 513; Mature: 513

Protein sequence:

>513_residues
MNLSFPELGISQERVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPILERLDPQQKAVQAIVLTPT
RELAIQVHDAMAQFVGNSGLRTLAIYGGQSIDRQMLQLKRGVHIVVGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLSM
GFIDDVEKILSQAPQDRQTALFSATMPPSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARALQPILEME
DPETALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVVATDIAARGLDVDQLSHVINYDLP
DSVETYVHRIGRTGRAGKEGTAITLVQPFERRKQQIFERHVRQNWQLLSIPTRAQIEARHILKLQEQVREALAGERLASF
LPIVSELIEKYDAQAIAAAALQIAYDQTRPAWLSTDAEIPEEVASTPKPKLGGKRREFSGDRGRSNWNKSDNNNSDDERR
GTPKPKLRTGRRETSATPSNPKLGSPAARESAS

Sequences:

>Translated_513_residues
MNLSFPELGISQERVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPILERLDPQQKAVQAIVLTPT
RELAIQVHDAMAQFVGNSGLRTLAIYGGQSIDRQMLQLKRGVHIVVGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLSM
GFIDDVEKILSQAPQDRQTALFSATMPPSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARALQPILEME
DPETALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVVATDIAARGLDVDQLSHVINYDLP
DSVETYVHRIGRTGRAGKEGTAITLVQPFERRKQQIFERHVRQNWQLLSIPTRAQIEARHILKLQEQVREALAGERLASF
LPIVSELIEKYDAQAIAAAALQIAYDQTRPAWLSTDAEIPEEVASTPKPKLGGKRREFSGDRGRSNWNKSDNNNSDDERR
GTPKPKLRTGRRETSATPSNPKLGSPAARESAS
>Mature_513_residues
MNLSFPELGISQERVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPILERLDPQQKAVQAIVLTPT
RELAIQVHDAMAQFVGNSGLRTLAIYGGQSIDRQMLQLKRGVHIVVGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLSM
GFIDDVEKILSQAPQDRQTALFSATMPPSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARALQPILEME
DPETALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVVATDIAARGLDVDQLSHVINYDLP
DSVETYVHRIGRTGRAGKEGTAITLVQPFERRKQQIFERHVRQNWQLLSIPTRAQIEARHILKLQEQVREALAGERLASF
LPIVSELIEKYDAQAIAAAALQIAYDQTRPAWLSTDAEIPEEVASTPKPKLGGKRREFSGDRGRSNWNKSDNNNSDDERR
GTPKPKLRTGRRETSATPSNPKLGSPAARESAS

Specific function: May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures. Unwinds dsRNA in both 5'- and 3'-directions and shows RNA-dependent ATPase activity [H]

COG id: COG0513

COG function: function code LKJ; Superfamily II DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI7661920, Length=344, Percent_Identity=39.2441860465116, Blast_Score=271, Evalue=1e-72,
Organism=Homo sapiens, GI222352149, Length=370, Percent_Identity=39.1891891891892, Blast_Score=253, Evalue=4e-67,
Organism=Homo sapiens, GI45446747, Length=354, Percent_Identity=38.135593220339, Blast_Score=251, Evalue=1e-66,
Organism=Homo sapiens, GI45446743, Length=354, Percent_Identity=38.135593220339, Blast_Score=251, Evalue=1e-66,
Organism=Homo sapiens, GI301171475, Length=396, Percent_Identity=37.1212121212121, Blast_Score=250, Evalue=2e-66,
Organism=Homo sapiens, GI301171467, Length=366, Percent_Identity=38.5245901639344, Blast_Score=250, Evalue=2e-66,
Organism=Homo sapiens, GI87196351, Length=366, Percent_Identity=38.5245901639344, Blast_Score=250, Evalue=2e-66,
Organism=Homo sapiens, GI41327773, Length=351, Percent_Identity=38.1766381766382, Blast_Score=249, Evalue=3e-66,
Organism=Homo sapiens, GI41327771, Length=367, Percent_Identity=37.6021798365123, Blast_Score=249, Evalue=3e-66,
Organism=Homo sapiens, GI169881239, Length=366, Percent_Identity=38.2513661202186, Blast_Score=249, Evalue=4e-66,
Organism=Homo sapiens, GI13514809, Length=366, Percent_Identity=38.2513661202186, Blast_Score=249, Evalue=4e-66,
Organism=Homo sapiens, GI4758138, Length=355, Percent_Identity=39.1549295774648, Blast_Score=249, Evalue=5e-66,
Organism=Homo sapiens, GI20149629, Length=389, Percent_Identity=37.2750642673522, Blast_Score=249, Evalue=6e-66,
Organism=Homo sapiens, GI148613856, Length=354, Percent_Identity=40.3954802259887, Blast_Score=246, Evalue=5e-65,
Organism=Homo sapiens, GI38201710, Length=354, Percent_Identity=40.3954802259887, Blast_Score=246, Evalue=5e-65,
Organism=Homo sapiens, GI4503529, Length=351, Percent_Identity=40.4558404558405, Blast_Score=241, Evalue=1e-63,
Organism=Homo sapiens, GI164664518, Length=343, Percent_Identity=34.9854227405248, Blast_Score=240, Evalue=2e-63,
Organism=Homo sapiens, GI262118318, Length=357, Percent_Identity=37.5350140056022, Blast_Score=238, Evalue=1e-62,
Organism=Homo sapiens, GI13518015, Length=358, Percent_Identity=37.4301675977654, Blast_Score=238, Evalue=1e-62,
Organism=Homo sapiens, GI262231852, Length=358, Percent_Identity=37.4301675977654, Blast_Score=238, Evalue=1e-62,
Organism=Homo sapiens, GI216548263, Length=358, Percent_Identity=37.4301675977654, Blast_Score=238, Evalue=1e-62,
Organism=Homo sapiens, GI31542656, Length=373, Percent_Identity=35.9249329758713, Blast_Score=237, Evalue=2e-62,
Organism=Homo sapiens, GI83700235, Length=350, Percent_Identity=40, Blast_Score=237, Evalue=3e-62,
Organism=Homo sapiens, GI21071032, Length=358, Percent_Identity=37.1508379888268, Blast_Score=233, Evalue=4e-61,
Organism=Homo sapiens, GI224593278, Length=364, Percent_Identity=36.8131868131868, Blast_Score=231, Evalue=1e-60,
Organism=Homo sapiens, GI55749865, Length=349, Percent_Identity=34.6704871060172, Blast_Score=227, Evalue=2e-59,
Organism=Homo sapiens, GI50659095, Length=392, Percent_Identity=35.4591836734694, Blast_Score=221, Evalue=1e-57,
Organism=Homo sapiens, GI41327776, Length=389, Percent_Identity=33.9331619537275, Blast_Score=219, Evalue=5e-57,
Organism=Homo sapiens, GI164419743, Length=354, Percent_Identity=35.3107344632768, Blast_Score=216, Evalue=4e-56,
Organism=Homo sapiens, GI51094101, Length=354, Percent_Identity=35.3107344632768, Blast_Score=216, Evalue=4e-56,
Organism=Homo sapiens, GI13129006, Length=384, Percent_Identity=33.8541666666667, Blast_Score=213, Evalue=2e-55,
Organism=Homo sapiens, GI188035877, Length=355, Percent_Identity=35.4929577464789, Blast_Score=212, Evalue=6e-55,
Organism=Homo sapiens, GI21040371, Length=346, Percent_Identity=33.5260115606936, Blast_Score=205, Evalue=7e-53,
Organism=Homo sapiens, GI4758112, Length=348, Percent_Identity=33.0459770114943, Blast_Score=204, Evalue=2e-52,
Organism=Homo sapiens, GI18375623, Length=348, Percent_Identity=33.0459770114943, Blast_Score=204, Evalue=2e-52,
Organism=Homo sapiens, GI8922886, Length=364, Percent_Identity=36.5384615384615, Blast_Score=202, Evalue=5e-52,
Organism=Homo sapiens, GI6005743, Length=364, Percent_Identity=36.5384615384615, Blast_Score=201, Evalue=1e-51,
Organism=Homo sapiens, GI62241022, Length=347, Percent_Identity=37.1757925072046, Blast_Score=196, Evalue=6e-50,
Organism=Homo sapiens, GI164419732, Length=364, Percent_Identity=34.6153846153846, Blast_Score=194, Evalue=1e-49,
Organism=Homo sapiens, GI38569505, Length=347, Percent_Identity=32.8530259365994, Blast_Score=188, Evalue=1e-47,
Organism=Homo sapiens, GI38569503, Length=347, Percent_Identity=32.8530259365994, Blast_Score=187, Evalue=2e-47,
Organism=Homo sapiens, GI41327779, Length=355, Percent_Identity=33.2394366197183, Blast_Score=184, Evalue=3e-46,
Organism=Homo sapiens, GI62241024, Length=325, Percent_Identity=37.2307692307692, Blast_Score=182, Evalue=4e-46,
Organism=Homo sapiens, GI256223453, Length=351, Percent_Identity=30.4843304843305, Blast_Score=181, Evalue=2e-45,
Organism=Homo sapiens, GI13514831, Length=367, Percent_Identity=30.7901907356948, Blast_Score=174, Evalue=1e-43,
Organism=Homo sapiens, GI17505907, Length=406, Percent_Identity=28.8177339901478, Blast_Score=174, Evalue=2e-43,
Organism=Homo sapiens, GI38327634, Length=377, Percent_Identity=30.2387267904509, Blast_Score=162, Evalue=6e-40,
Organism=Homo sapiens, GI9506931, Length=423, Percent_Identity=28.3687943262411, Blast_Score=160, Evalue=3e-39,
Organism=Homo sapiens, GI4826686, Length=335, Percent_Identity=32.8358208955224, Blast_Score=154, Evalue=2e-37,
Organism=Homo sapiens, GI256773275, Length=398, Percent_Identity=31.4070351758794, Blast_Score=140, Evalue=3e-33,
Organism=Homo sapiens, GI9966805, Length=309, Percent_Identity=32.0388349514563, Blast_Score=129, Evalue=4e-30,
Organism=Homo sapiens, GI20336298, Length=215, Percent_Identity=33.4883720930233, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI154759257, Length=413, Percent_Identity=27.1186440677966, Blast_Score=122, Evalue=6e-28,
Organism=Escherichia coli, GI87082221, Length=432, Percent_Identity=43.75, Blast_Score=347, Evalue=7e-97,
Organism=Escherichia coli, GI1787016, Length=375, Percent_Identity=41.3333333333333, Blast_Score=293, Evalue=2e-80,
Organism=Escherichia coli, GI1787605, Length=358, Percent_Identity=39.6648044692737, Blast_Score=256, Evalue=2e-69,
Organism=Escherichia coli, GI1790214, Length=350, Percent_Identity=40.2857142857143, Blast_Score=251, Evalue=8e-68,
Organism=Escherichia coli, GI1788930, Length=335, Percent_Identity=40, Blast_Score=212, Evalue=5e-56,
Organism=Caenorhabditis elegans, GI71987143, Length=357, Percent_Identity=40.0560224089636, Blast_Score=281, Evalue=7e-76,
Organism=Caenorhabditis elegans, GI71995724, Length=344, Percent_Identity=38.953488372093, Blast_Score=268, Evalue=5e-72,
Organism=Caenorhabditis elegans, GI17507121, Length=344, Percent_Identity=38.6627906976744, Blast_Score=267, Evalue=9e-72,
Organism=Caenorhabditis elegans, GI86570094, Length=359, Percent_Identity=38.7186629526462, Blast_Score=256, Evalue=2e-68,
Organism=Caenorhabditis elegans, GI17555296, Length=356, Percent_Identity=38.4831460674157, Blast_Score=254, Evalue=6e-68,
Organism=Caenorhabditis elegans, GI32565321, Length=379, Percent_Identity=37.467018469657, Blast_Score=248, Evalue=6e-66,
Organism=Caenorhabditis elegans, GI17510309, Length=363, Percent_Identity=39.1184573002755, Blast_Score=246, Evalue=2e-65,
Organism=Caenorhabditis elegans, GI17510307, Length=363, Percent_Identity=39.1184573002755, Blast_Score=246, Evalue=2e-65,
Organism=Caenorhabditis elegans, GI71995514, Length=363, Percent_Identity=39.1184573002755, Blast_Score=246, Evalue=3e-65,
Organism=Caenorhabditis elegans, GI115533224, Length=333, Percent_Identity=41.4414414414414, Blast_Score=244, Evalue=6e-65,
Organism=Caenorhabditis elegans, GI71995718, Length=369, Percent_Identity=35.5013550135501, Blast_Score=231, Evalue=7e-61,
Organism=Caenorhabditis elegans, GI17537549, Length=371, Percent_Identity=38.0053908355795, Blast_Score=229, Evalue=3e-60,
Organism=Caenorhabditis elegans, GI17552114, Length=360, Percent_Identity=30.8333333333333, Blast_Score=222, Evalue=3e-58,
Organism=Caenorhabditis elegans, GI17507945, Length=358, Percent_Identity=36.3128491620112, Blast_Score=222, Evalue=4e-58,
Organism=Caenorhabditis elegans, GI17552642, Length=355, Percent_Identity=37.1830985915493, Blast_Score=216, Evalue=2e-56,
Organism=Caenorhabditis elegans, GI17507881, Length=370, Percent_Identity=36.4864864864865, Blast_Score=216, Evalue=3e-56,
Organism=Caenorhabditis elegans, GI71982858, Length=332, Percent_Identity=35.8433734939759, Blast_Score=216, Evalue=3e-56,
Organism=Caenorhabditis elegans, GI193206561, Length=347, Percent_Identity=34.5821325648415, Blast_Score=216, Evalue=3e-56,
Organism=Caenorhabditis elegans, GI71999646, Length=343, Percent_Identity=34.1107871720117, Blast_Score=216, Evalue=3e-56,
Organism=Caenorhabditis elegans, GI17507877, Length=369, Percent_Identity=34.4173441734417, Blast_Score=215, Evalue=3e-56,
Organism=Caenorhabditis elegans, GI71999644, Length=343, Percent_Identity=34.1107871720117, Blast_Score=215, Evalue=5e-56,
Organism=Caenorhabditis elegans, GI17510559, Length=478, Percent_Identity=30.9623430962343, Blast_Score=213, Evalue=1e-55,
Organism=Caenorhabditis elegans, GI115532546, Length=394, Percent_Identity=31.4720812182741, Blast_Score=212, Evalue=3e-55,
Organism=Caenorhabditis elegans, GI115532548, Length=393, Percent_Identity=31.2977099236641, Blast_Score=212, Evalue=4e-55,
Organism=Caenorhabditis elegans, GI17507879, Length=370, Percent_Identity=33.7837837837838, Blast_Score=206, Evalue=3e-53,
Organism=Caenorhabditis elegans, GI17509811, Length=440, Percent_Identity=31.5909090909091, Blast_Score=205, Evalue=4e-53,
Organism=Caenorhabditis elegans, GI17553716, Length=336, Percent_Identity=32.7380952380952, Blast_Score=194, Evalue=8e-50,
Organism=Caenorhabditis elegans, GI193208216, Length=406, Percent_Identity=30.2955665024631, Blast_Score=190, Evalue=2e-48,
Organism=Caenorhabditis elegans, GI17536099, Length=371, Percent_Identity=33.9622641509434, Blast_Score=181, Evalue=9e-46,
Organism=Caenorhabditis elegans, GI17536101, Length=404, Percent_Identity=32.1782178217822, Blast_Score=181, Evalue=9e-46,
Organism=Caenorhabditis elegans, GI17536103, Length=404, Percent_Identity=32.1782178217822, Blast_Score=180, Evalue=2e-45,
Organism=Caenorhabditis elegans, GI17505370, Length=345, Percent_Identity=32.7536231884058, Blast_Score=178, Evalue=6e-45,
Organism=Caenorhabditis elegans, GI71990816, Length=368, Percent_Identity=31.7934782608696, Blast_Score=166, Evalue=4e-41,
Organism=Caenorhabditis elegans, GI17508543, Length=361, Percent_Identity=29.6398891966759, Blast_Score=159, Evalue=4e-39,
Organism=Caenorhabditis elegans, GI17556951, Length=414, Percent_Identity=28.743961352657, Blast_Score=150, Evalue=2e-36,
Organism=Caenorhabditis elegans, GI17507641, Length=397, Percent_Identity=28.7153652392947, Blast_Score=143, Evalue=2e-34,
Organism=Caenorhabditis elegans, GI71982862, Length=184, Percent_Identity=39.6739130434783, Blast_Score=142, Evalue=4e-34,
Organism=Caenorhabditis elegans, GI32564046, Length=387, Percent_Identity=28.4237726098191, Blast_Score=134, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI25148203, Length=397, Percent_Identity=23.1738035264484, Blast_Score=129, Evalue=4e-30,
Organism=Caenorhabditis elegans, GI25148291, Length=332, Percent_Identity=26.8072289156627, Blast_Score=121, Evalue=9e-28,
Organism=Caenorhabditis elegans, GI71997889, Length=356, Percent_Identity=26.4044943820225, Blast_Score=110, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17566630, Length=333, Percent_Identity=24.9249249249249, Blast_Score=92, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI71987152, Length=93, Percent_Identity=46.2365591397849, Blast_Score=92, Evalue=7e-19,
Organism=Saccharomyces cerevisiae, GI6321360, Length=361, Percent_Identity=41.8282548476454, Blast_Score=263, Evalue=6e-71,
Organism=Saccharomyces cerevisiae, GI6324217, Length=351, Percent_Identity=39.8860398860399, Blast_Score=254, Evalue=3e-68,
Organism=Saccharomyces cerevisiae, GI6320224, Length=346, Percent_Identity=35.8381502890173, Blast_Score=251, Evalue=2e-67,
Organism=Saccharomyces cerevisiae, GI6325138, Length=373, Percent_Identity=38.8739946380697, Blast_Score=249, Evalue=1e-66,
Organism=Saccharomyces cerevisiae, GI6324778, Length=352, Percent_Identity=39.7727272727273, Blast_Score=248, Evalue=1e-66,
Organism=Saccharomyces cerevisiae, GI6321856, Length=349, Percent_Identity=38.9684813753582, Blast_Score=239, Evalue=5e-64,
Organism=Saccharomyces cerevisiae, GI6323021, Length=357, Percent_Identity=40.0560224089636, Blast_Score=238, Evalue=1e-63,
Organism=Saccharomyces cerevisiae, GI6320041, Length=343, Percent_Identity=35.5685131195335, Blast_Score=235, Evalue=1e-62,
Organism=Saccharomyces cerevisiae, GI6322912, Length=342, Percent_Identity=39.766081871345, Blast_Score=234, Evalue=3e-62,
Organism=Saccharomyces cerevisiae, GI6322323, Length=342, Percent_Identity=39.766081871345, Blast_Score=234, Evalue=3e-62,
Organism=Saccharomyces cerevisiae, GI6324620, Length=356, Percent_Identity=36.5168539325843, Blast_Score=224, Evalue=2e-59,
Organism=Saccharomyces cerevisiae, GI6320449, Length=358, Percent_Identity=36.0335195530726, Blast_Score=216, Evalue=6e-57,
Organism=Saccharomyces cerevisiae, GI6321963, Length=360, Percent_Identity=36.9444444444444, Blast_Score=211, Evalue=2e-55,
Organism=Saccharomyces cerevisiae, GI6320119, Length=332, Percent_Identity=35.5421686746988, Blast_Score=204, Evalue=2e-53,
Organism=Saccharomyces cerevisiae, GI6319714, Length=371, Percent_Identity=31.8059299191375, Blast_Score=199, Evalue=9e-52,
Organism=Saccharomyces cerevisiae, GI6323947, Length=356, Percent_Identity=32.5842696629214, Blast_Score=188, Evalue=2e-48,
Organism=Saccharomyces cerevisiae, GI6322427, Length=362, Percent_Identity=30.6629834254144, Blast_Score=180, Evalue=5e-46,
Organism=Saccharomyces cerevisiae, GI6321111, Length=355, Percent_Identity=32.6760563380282, Blast_Score=179, Evalue=1e-45,
Organism=Saccharomyces cerevisiae, GI6319618, Length=412, Percent_Identity=30.3398058252427, Blast_Score=176, Evalue=1e-44,
Organism=Saccharomyces cerevisiae, GI6320400, Length=370, Percent_Identity=31.6216216216216, Blast_Score=167, Evalue=4e-42,
Organism=Saccharomyces cerevisiae, GI6323306, Length=444, Percent_Identity=26.5765765765766, Blast_Score=163, Evalue=8e-41,
Organism=Saccharomyces cerevisiae, GI6320173, Length=206, Percent_Identity=38.3495145631068, Blast_Score=160, Evalue=6e-40,
Organism=Saccharomyces cerevisiae, GI6321267, Length=337, Percent_Identity=32.6409495548961, Blast_Score=158, Evalue=2e-39,
Organism=Saccharomyces cerevisiae, GI6322876, Length=448, Percent_Identity=27.2321428571429, Blast_Score=142, Evalue=1e-34,
Organism=Saccharomyces cerevisiae, GI6324366, Length=347, Percent_Identity=27.6657060518732, Blast_Score=123, Evalue=9e-29,
Organism=Saccharomyces cerevisiae, GI6321374, Length=376, Percent_Identity=22.3404255319149, Blast_Score=91, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24642151, Length=357, Percent_Identity=38.375350140056, Blast_Score=261, Evalue=9e-70,
Organism=Drosophila melanogaster, GI28574962, Length=352, Percent_Identity=40.9090909090909, Blast_Score=258, Evalue=5e-69,
Organism=Drosophila melanogaster, GI24584994, Length=377, Percent_Identity=37.9310344827586, Blast_Score=257, Evalue=1e-68,
Organism=Drosophila melanogaster, GI24645031, Length=344, Percent_Identity=37.5, Blast_Score=256, Evalue=3e-68,
Organism=Drosophila melanogaster, GI24584399, Length=341, Percent_Identity=37.5366568914956, Blast_Score=254, Evalue=1e-67,
Organism=Drosophila melanogaster, GI24585582, Length=392, Percent_Identity=36.2244897959184, Blast_Score=250, Evalue=2e-66,
Organism=Drosophila melanogaster, GI21355075, Length=339, Percent_Identity=37.7581120943953, Blast_Score=247, Evalue=1e-65,
Organism=Drosophila melanogaster, GI24582080, Length=349, Percent_Identity=39.2550143266476, Blast_Score=246, Evalue=2e-65,
Organism=Drosophila melanogaster, GI24582078, Length=349, Percent_Identity=39.2550143266476, Blast_Score=246, Evalue=2e-65,
Organism=Drosophila melanogaster, GI17136248, Length=349, Percent_Identity=39.2550143266476, Blast_Score=246, Evalue=2e-65,
Organism=Drosophila melanogaster, GI24582075, Length=349, Percent_Identity=39.2550143266476, Blast_Score=246, Evalue=2e-65,
Organism=Drosophila melanogaster, GI24644483, Length=352, Percent_Identity=38.6363636363636, Blast_Score=245, Evalue=5e-65,
Organism=Drosophila melanogaster, GI24644479, Length=353, Percent_Identity=38.5269121813031, Blast_Score=245, Evalue=5e-65,
Organism=Drosophila melanogaster, GI24644487, Length=352, Percent_Identity=38.6363636363636, Blast_Score=244, Evalue=7e-65,
Organism=Drosophila melanogaster, GI45551833, Length=352, Percent_Identity=38.6363636363636, Blast_Score=244, Evalue=7e-65,
Organism=Drosophila melanogaster, GI24644485, Length=352, Percent_Identity=38.6363636363636, Blast_Score=244, Evalue=7e-65,
Organism=Drosophila melanogaster, GI281361218, Length=352, Percent_Identity=38.6363636363636, Blast_Score=244, Evalue=7e-65,
Organism=Drosophila melanogaster, GI24644481, Length=352, Percent_Identity=38.6363636363636, Blast_Score=244, Evalue=7e-65,
Organism=Drosophila melanogaster, GI17985987, Length=350, Percent_Identity=39.4285714285714, Blast_Score=242, Evalue=3e-64,
Organism=Drosophila melanogaster, GI18857967, Length=361, Percent_Identity=37.3961218836565, Blast_Score=241, Evalue=6e-64,
Organism=Drosophila melanogaster, GI24662330, Length=368, Percent_Identity=36.6847826086957, Blast_Score=239, Evalue=2e-63,
Organism=Drosophila melanogaster, GI17977678, Length=358, Percent_Identity=36.5921787709497, Blast_Score=227, Evalue=2e-59,
Organism=Drosophila melanogaster, GI24583281, Length=342, Percent_Identity=32.1637426900585, Blast_Score=223, Evalue=2e-58,
Organism=Drosophila melanogaster, GI24583279, Length=356, Percent_Identity=32.0224719101124, Blast_Score=223, Evalue=3e-58,
Organism=Drosophila melanogaster, GI21356161, Length=363, Percent_Identity=36.6391184573003, Blast_Score=217, Evalue=1e-56,
Organism=Drosophila melanogaster, GI28575014, Length=346, Percent_Identity=32.9479768786127, Blast_Score=212, Evalue=6e-55,
Organism=Drosophila melanogaster, GI281365720, Length=313, Percent_Identity=38.0191693290735, Blast_Score=206, Evalue=2e-53,
Organism=Drosophila melanogaster, GI17136814, Length=350, Percent_Identity=35.4285714285714, Blast_Score=197, Evalue=2e-50,
Organism=Drosophila melanogaster, GI24581954, Length=331, Percent_Identity=34.1389728096677, Blast_Score=195, Evalue=8e-50,
Organism=Drosophila melanogaster, GI24581952, Length=331, Percent_Identity=34.1389728096677, Blast_Score=195, Evalue=8e-50,
Organism=Drosophila melanogaster, GI24581956, Length=331, Percent_Identity=34.1389728096677, Blast_Score=195, Evalue=8e-50,
Organism=Drosophila melanogaster, GI21355559, Length=366, Percent_Identity=35.2459016393443, Blast_Score=180, Evalue=2e-45,
Organism=Drosophila melanogaster, GI17647335, Length=382, Percent_Identity=30.1047120418848, Blast_Score=178, Evalue=6e-45,
Organism=Drosophila melanogaster, GI28571808, Length=359, Percent_Identity=30.9192200557103, Blast_Score=178, Evalue=8e-45,
Organism=Drosophila melanogaster, GI28571809, Length=359, Percent_Identity=30.9192200557103, Blast_Score=178, Evalue=8e-45,
Organism=Drosophila melanogaster, GI24666101, Length=332, Percent_Identity=33.433734939759, Blast_Score=174, Evalue=1e-43,
Organism=Drosophila melanogaster, GI24668515, Length=331, Percent_Identity=32.02416918429, Blast_Score=163, Evalue=2e-40,
Organism=Drosophila melanogaster, GI24642822, Length=371, Percent_Identity=29.3800539083558, Blast_Score=155, Evalue=6e-38,
Organism=Drosophila melanogaster, GI24643725, Length=400, Percent_Identity=27.25, Blast_Score=150, Evalue=2e-36,
Organism=Drosophila melanogaster, GI20130173, Length=320, Percent_Identity=30, Blast_Score=142, Evalue=4e-34,
Organism=Drosophila melanogaster, GI19920478, Length=362, Percent_Identity=26.7955801104972, Blast_Score=132, Evalue=6e-31,
Organism=Drosophila melanogaster, GI28571338, Length=254, Percent_Identity=30.7086614173228, Blast_Score=125, Evalue=1e-28,
Organism=Drosophila melanogaster, GI18859659, Length=254, Percent_Identity=30.7086614173228, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI17136666, Length=436, Percent_Identity=26.3761467889908, Blast_Score=121, Evalue=1e-27,
Organism=Drosophila melanogaster, GI24640164, Length=354, Percent_Identity=24.5762711864407, Blast_Score=116, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR000629
- InterPro:   IPR014014 [H]

Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]

EC number: =3.6.4.13 [H]

Molecular weight: Translated: 57298; Mature: 57298

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS00039 DEAD_ATP_HELICASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MNLSFPELGISQERVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLP
CCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEECH
ILERLDPQQKAVQAIVLTPTRELAIQVHDAMAQFVGNSGLRTLAIYGGQSIDRQMLQLKR
HHHHCCHHHHHHEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHC
GVHIVVGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQDRQTA
CCEEEECCCHHHHHHHHCCCCEEHHEEEEEECCHHHHHHHCCHHHHHHHHHHCCCCHHHE
LFSATMPPSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARALQPILEME
EEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCC
DPETALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVVATD
CCCEEEEEEECCHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHCCCEEEEEEEH
IAARGLDVDQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAITLVQPFERRKQQIFERH
HHHCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHH
VRQNWQLLSIPTRAQIEARHILKLQEQVREALAGERLASFLPIVSELIEKYDAQAIAAAA
HHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQIAYDQTRPAWLSTDAEIPEEVASTPKPKLGGKRREFSGDRGRSNWNKSDNNNSDDERR
HHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
GTPKPKLRTGRRETSATPSNPKLGSPAARESAS
CCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNLSFPELGISQERVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLP
CCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEECH
ILERLDPQQKAVQAIVLTPTRELAIQVHDAMAQFVGNSGLRTLAIYGGQSIDRQMLQLKR
HHHHCCHHHHHHEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHC
GVHIVVGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQDRQTA
CCEEEECCCHHHHHHHHCCCCEEHHEEEEEECCHHHHHHHCCHHHHHHHHHHCCCCHHHE
LFSATMPPSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARALQPILEME
EEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCC
DPETALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVVATD
CCCEEEEEEECCHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHCCCEEEEEEEH
IAARGLDVDQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAITLVQPFERRKQQIFERH
HHHCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHH
VRQNWQLLSIPTRAQIEARHILKLQEQVREALAGERLASFLPIVSELIEKYDAQAIAAAA
HHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQIAYDQTRPAWLSTDAEIPEEVASTPKPKLGGKRREFSGDRGRSNWNKSDNNNSDDERR
HHHHHHCCCCCEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
GTPKPKLRTGRRETSATPSNPKLGSPAARESAS
CCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA