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The map label for this gene is 17228661

Identifier: 17228661

GI number: 17228661

Start: 1369218

End: 1369757

Strand: Direct

Name: 17228661

Synonym: alr1166

Alternate gene names: NA

Gene position: 1369218-1369757 (Clockwise)

Preceding gene: 17228655

Following gene: 17228662

Centisome position: 21.35

GC content: 42.04

Gene sequence:

>540_bases
ATGAGCCGTTTTTTCGTTGCCTTGCTACCGCCGCAAGAGATACAAGACTACGCCAACCAAATCAAACAGTATTTTGCAGA
TCATTACGCTAGTCGCCACGCGCAAAAGTCGCCACCACACATTACACTACAACCACCTTTCAAGTGGGTAGATGATAATT
TATCAATACTAGAAACCTCCTTGAGAGAGTTTGCCAGCCAGCAACAGTCAATACCAATAACTCTCAGTGGCTTTGATGCC
TTTCCACCTCGTGTCATCTATATCAATGTCGAGAGAAGTCCAGAACTGTTAAACTTGCAAGCTGAGTTAATAACCCATAC
AGAAACTAGCTTGAAAATTGTAGATGCAGTTGGCAAACAGCGACCTTTTGCACCACACATGACAGTAGCCTTTCGAGACT
TAACAAAACAAAACTTTCAGGCTGCTTGGCCAGAATTTGCCAATCGTCAAATAAATTTTGAATTCACTGCGGATAAGTTA
ACTTTGCTGTTTCACGATGGTAGGCGTTGGCTGATTAAATCAGAGTTTAATTTCCTCTAG

Upstream 100 bases:

>100_bases
AACTTCATGGAAATAAAGTGAGGAGCGATCGCGAGTTTATGTAATGTCAATTTGCAAATTACTGTATCCTGTTTTCCATT
TTAAATTTTGAATTTACCTA

Downstream 100 bases:

>100_bases
CCAGAACCACATATAATTTTTTATTACAGATGCTTTGCGTGTAAAGACAGAAAGGTTTGATTAGTAATTGTATATATTAA
TTAAATAAAATGCACGTAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MSRFFVALLPPQEIQDYANQIKQYFADHYASRHAQKSPPHITLQPPFKWVDDNLSILETSLREFASQQQSIPITLSGFDA
FPPRVIYINVERSPELLNLQAELITHTETSLKIVDAVGKQRPFAPHMTVAFRDLTKQNFQAAWPEFANRQINFEFTADKL
TLLFHDGRRWLIKSEFNFL

Sequences:

>Translated_179_residues
MSRFFVALLPPQEIQDYANQIKQYFADHYASRHAQKSPPHITLQPPFKWVDDNLSILETSLREFASQQQSIPITLSGFDA
FPPRVIYINVERSPELLNLQAELITHTETSLKIVDAVGKQRPFAPHMTVAFRDLTKQNFQAAWPEFANRQINFEFTADKL
TLLFHDGRRWLIKSEFNFL
>Mature_178_residues
SRFFVALLPPQEIQDYANQIKQYFADHYASRHAQKSPPHITLQPPFKWVDDNLSILETSLREFASQQQSIPITLSGFDAF
PPRVIYINVERSPELLNLQAELITHTETSLKIVDAVGKQRPFAPHMTVAFRDLTKQNFQAAWPEFANRQINFEFTADKLT
LLFHDGRRWLIKSEFNFL

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0477 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014051
- InterPro:   IPR009097
- InterPro:   IPR022932 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 20848; Mature: 20717

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRFFVALLPPQEIQDYANQIKQYFADHYASRHAQKSPPHITLQPPFKWVDDNLSILETS
CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHH
LREFASQQQSIPITLSGFDAFPPRVIYINVERSPELLNLQAELITHTETSLKIVDAVGKQ
HHHHHHHHCCCCEEEECCCCCCCEEEEEEECCCCCEEEHHHHHEECCCCHHHHHHHHCCC
RPFAPHMTVAFRDLTKQNFQAAWPEFANRQINFEFTADKLTLLFHDGRRWLIKSEFNFL
CCCCCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCEEEEEEECCCEEEEECCCCCC
>Mature Secondary Structure 
SRFFVALLPPQEIQDYANQIKQYFADHYASRHAQKSPPHITLQPPFKWVDDNLSILETS
CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHH
LREFASQQQSIPITLSGFDAFPPRVIYINVERSPELLNLQAELITHTETSLKIVDAVGKQ
HHHHHHHHCCCCEEEECCCCCCCEEEEEEECCCCCEEEHHHHHEECCCCHHHHHHHHCCC
RPFAPHMTVAFRDLTKQNFQAAWPEFANRQINFEFTADKLTLLFHDGRRWLIKSEFNFL
CCCCCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCEEEEEEECCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA