Click here to switch to the map view.

The map label for this gene is yjbQ [C]

Identifier: 17228535

GI number: 17228535

Start: 1211302

End: 1211739

Strand: Direct

Name: yjbQ [C]

Synonym: alr1040

Alternate gene names: 17228535

Gene position: 1211302-1211739 (Clockwise)

Preceding gene: 17228534

Following gene: 17228536

Centisome position: 18.89

GC content: 36.07

Gene sequence:

>438_bases
ATGTCCATATTCAATAAAATCATCGAAATAGAAACAGAAGCAGGAATTAATATTTACAACATCACTACCTATCTCAAGGA
CTTTTTAGCTGCTACTGCAATTCAAAATGGGCAAATTTTAGTTTTTTCACAACACACAACCACTGCTTTAGCAATTAATG
AAGATGAAGTTAGATTATTAGAAGATATAAAAGTATTTTTGCGGAAACTGGCCCCGGAGTCGGAACGTTACTTGCATAAC
GATTTACATTTAAGAGTTGTGCCAGAAGATGAACCGATGAATGCTCATTCTCATTTAATGGCAATGATGTTAACGACTAG
CGAAGTTATCCCTGTCATAGAGGGAAAATTAGCATTAGGAACTTGGCAATCTGTATTGTTTTTCGAGTTAGATGGCCCCC
GTAAAAGAAATGTGCTGCTGCAAATTTCTGGGGAATAA

Upstream 100 bases:

>100_bases
TAAAGCTATTATGATTGATTAATTTTATAGTCAGTCTAAATTTGCACTGCTGATTTTTGATTTTTTGCCAATAAGTTGGT
TATTTAATATCGAATTTGTT

Downstream 100 bases:

>100_bases
CTTCACGGGTAAATCATTGAAAATGCGGGTGAGCAATACAAAAGAAAGTTAGTACTTAAGTACTGTTTTGGGTGCTGTTG
GCGTGGAAATACATGACTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MSIFNKIIEIETEAGINIYNITTYLKDFLAATAIQNGQILVFSQHTTTALAINEDEVRLLEDIKVFLRKLAPESERYLHN
DLHLRVVPEDEPMNAHSHLMAMMLTTSEVIPVIEGKLALGTWQSVLFFELDGPRKRNVLLQISGE

Sequences:

>Translated_145_residues
MSIFNKIIEIETEAGINIYNITTYLKDFLAATAIQNGQILVFSQHTTTALAINEDEVRLLEDIKVFLRKLAPESERYLHN
DLHLRVVPEDEPMNAHSHLMAMMLTTSEVIPVIEGKLALGTWQSVLFFELDGPRKRNVLLQISGE
>Mature_144_residues
SIFNKIIEIETEAGINIYNITTYLKDFLAATAIQNGQILVFSQHTTTALAINEDEVRLLEDIKVFLRKLAPESERYLHND
LHLRVVPEDEPMNAHSHLMAMMLTTSEVIPVIEGKLALGTWQSVLFFELDGPRKRNVLLQISGE

Specific function: Unknown

COG id: COG0432

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0047 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001602 [H]

Pfam domain/function: PF01894 UPF0047 [H]

EC number: NA

Molecular weight: Translated: 16462; Mature: 16331

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS01314 UPF0047

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIFNKIIEIETEAGINIYNITTYLKDFLAATAIQNGQILVFSQHTTTALAINEDEVRLL
CCHHHHHEEEECCCCCEEEEHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCHHHHHH
EDIKVFLRKLAPESERYLHNDLHLRVVPEDEPMNAHSHLMAMMLTTSEVIPVIEGKLALG
HHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEECCEEEEC
TWQSVLFFELDGPRKRNVLLQISGE
CCCEEEEEEECCCCCCCEEEEEECC
>Mature Secondary Structure 
SIFNKIIEIETEAGINIYNITTYLKDFLAATAIQNGQILVFSQHTTTALAINEDEVRLL
CHHHHHEEEECCCCCEEEEHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCHHHHHH
EDIKVFLRKLAPESERYLHNDLHLRVVPEDEPMNAHSHLMAMMLTTSEVIPVIEGKLALG
HHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEECCEEEEC
TWQSVLFFELDGPRKRNVLLQISGE
CCCEEEEEEECCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]