Click here to switch to the map view.

The map label for this gene is 17228523

Identifier: 17228523

GI number: 17228523

Start: 1198932

End: 1200038

Strand: Direct

Name: 17228523

Synonym: alr1028

Alternate gene names: NA

Gene position: 1198932-1200038 (Clockwise)

Preceding gene: 17228521

Following gene: 17228524

Centisome position: 18.69

GC content: 42.55

Gene sequence:

>1107_bases
GTGGTGAAAAGTTTCAGTAGTCTGTTTGGCAAATCTCATAGAGGGGTAGGTGTAGAAATTGCACCAGAACGGGTGAATGT
AGTTCAAATACGCAAGCAGCGCCAAGGCTTGAAACTTGAATCTTTAACATCAGTTCCAGTTCCAGAGGGGATTGTCGCTG
ATGGTCAAATTACCGATCCCCCAGCAATGGCTCAATTAATTCAGCAGGCGCTAGCTGAAAGCAAAATCAAAGTATCTCGT
GTGGCTACTGGTGTACCTGGACGAGACTCGATTGTCCGTATCATACCTGTACCGTCAGAGTTGGATGACAAAGAATTACG
GGATATGGTGTTAAACCACGAAGCCGGGTTGTATTTACCCTATCCTCGTGAGGAAGCTGATGTAGATTATCAGAAACTTG
GGTACTTTGTAGATGAGGATGGCATTGAAAAGGTACGGGTTCTGTTAGTTGCTACCCGCAAGGAGGTAACAGATACATAT
ATTAGTACTTTTGAGCAGGCAGGCTTACAAATTGGTGTTTTAGAAATTAACAGTTTTGCACTAATTCGGACAATTCGTGA
TCAACTGCGGCAATTTGGGCCAGAAGAAGCAACAGTACTAGTTGATATAGAGTTCGACAGTACGGAAATTGCAATCATCA
TTAACGGCGTACCACAATTTTCCCGCACTGTTCCCATTGGAACTTATCAAATGCAAATGGCATTTGCTAGAGCTATGAGT
TTGCCCACTTCTAGAGATATGGAAATGTTACAGGGATTGGTGATTCCTGTAAATTCTGTAGATAGCGATAAAACGGGGAT
GACGGAAACTGACCCTGGTATGGCAGGCGTATTGCGAATCTTGGGAGAACTAACAGATGAGCTGCGCCGTTCTATTGATT
TTTACTTAAATCAGAGTGAAAACGTAGAAATAGCCCAGATTTTATTGGGTGGGCCTGGTGGTGGACTAGAACAACTTCAT
GAGTTTTTTACTCAACGTTTAAGTATTCCTACCAGTCAAATAGATCCTATAGGGTCTTTGTCCTTGCAAGTTGATGAAGA
AAAATATCCCTCTACACAACGTTCTGGTTTAGGAATAGTTCTTGGTTTAGGAATGAGGGAGGTATGA

Upstream 100 bases:

>100_bases
GCATTAGCCCTCAAGGAATATATATACTCAAAAAACTCACAACTAATGACCACTTAAGTCAATTTTAAATTTTCACTTTA
GCAGTTTGGCGGGCATAAAT

Downstream 100 bases:

>100_bases
TACCAATTCAAAATTATATCGGATTCCTATAGAAAAGTCAGTTTTTATCGGGATTTCCGGTTTTAAGTCTGTTTCCCTAT
TTTGGAGAATTGGTATAAGA

Product: hypothetical protein

Products: NA

Alternate protein names: Type IV Pilus Biogenesis Protein PilM; Tfp Pilus Assembly Protein ATPase PilM; Type 4 Fimbrial Biogenesis Protein PilM; Type IV Pilus Assembly Protein; Fimbrial Assembly Membrane Protein; Type IV Pilus Assembly Family Protein; Fimbrial Assembly Protein PilM; Type Iv Pilus Assembly Protein Pilm; Tfp Pilus Assembly Protein; Response Regulator Receiver Domain Protein; Response Regulator Receiver Domain-Containing Protein; Type IV Pili Biogenesis Protein PilM; Type IV Fimbrial Biogenesis Protein PilM; PilM Type IV Pilus Assembly Protein; Tfp Pilus Assembly Protein ATPase; Type IV Pilus Biogenesis Protein TapM; Tfp Pilus Assembly Protein ATPase PilM-Like Protein; Type 4 Fimbrial Biogenesis Protein; Pili Assembly Protein; Competence Protein PilM; Type IV Pilus Biogenesis ATPase PilM

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MVKSFSSLFGKSHRGVGVEIAPERVNVVQIRKQRQGLKLESLTSVPVPEGIVADGQITDPPAMAQLIQQALAESKIKVSR
VATGVPGRDSIVRIIPVPSELDDKELRDMVLNHEAGLYLPYPREEADVDYQKLGYFVDEDGIEKVRVLLVATRKEVTDTY
ISTFEQAGLQIGVLEINSFALIRTIRDQLRQFGPEEATVLVDIEFDSTEIAIIINGVPQFSRTVPIGTYQMQMAFARAMS
LPTSRDMEMLQGLVIPVNSVDSDKTGMTETDPGMAGVLRILGELTDELRRSIDFYLNQSENVEIAQILLGGPGGGLEQLH
EFFTQRLSIPTSQIDPIGSLSLQVDEEKYPSTQRSGLGIVLGLGMREV

Sequences:

>Translated_368_residues
MVKSFSSLFGKSHRGVGVEIAPERVNVVQIRKQRQGLKLESLTSVPVPEGIVADGQITDPPAMAQLIQQALAESKIKVSR
VATGVPGRDSIVRIIPVPSELDDKELRDMVLNHEAGLYLPYPREEADVDYQKLGYFVDEDGIEKVRVLLVATRKEVTDTY
ISTFEQAGLQIGVLEINSFALIRTIRDQLRQFGPEEATVLVDIEFDSTEIAIIINGVPQFSRTVPIGTYQMQMAFARAMS
LPTSRDMEMLQGLVIPVNSVDSDKTGMTETDPGMAGVLRILGELTDELRRSIDFYLNQSENVEIAQILLGGPGGGLEQLH
EFFTQRLSIPTSQIDPIGSLSLQVDEEKYPSTQRSGLGIVLGLGMREV
>Mature_368_residues
MVKSFSSLFGKSHRGVGVEIAPERVNVVQIRKQRQGLKLESLTSVPVPEGIVADGQITDPPAMAQLIQQALAESKIKVSR
VATGVPGRDSIVRIIPVPSELDDKELRDMVLNHEAGLYLPYPREEADVDYQKLGYFVDEDGIEKVRVLLVATRKEVTDTY
ISTFEQAGLQIGVLEINSFALIRTIRDQLRQFGPEEATVLVDIEFDSTEIAIIINGVPQFSRTVPIGTYQMQMAFARAMS
LPTSRDMEMLQGLVIPVNSVDSDKTGMTETDPGMAGVLRILGELTDELRRSIDFYLNQSENVEIAQILLGGPGGGLEQLH
EFFTQRLSIPTSQIDPIGSLSLQVDEEKYPSTQRSGLGIVLGLGMREV

Specific function: Unknown

COG id: COG4972

COG function: function code NU; Tfp pilus assembly protein, ATPase PilM

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40526; Mature: 40526

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKSFSSLFGKSHRGVGVEIAPERVNVVQIRKQRQGLKLESLTSVPVPEGIVADGQITDP
CCCCHHHHHCCCCCCCCEEECCCCCHHHHHHHHHCCCCHHHCCCCCCCCCEEECCCCCCC
PAMAQLIQQALAESKIKVSRVATGVPGRDSIVRIIPVPSELDDKELRDMVLNHEAGLYLP
HHHHHHHHHHHHHCCEEHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEECC
YPREEADVDYQKLGYFVDEDGIEKVRVLLVATRKEVTDTYISTFEQAGLQIGVLEINSFA
CCCCCCCCCHHHHCCEECCCCHHHEEHHEEHHHHHHHHHHHHHHHHCCCEEEEEEECCHH
LIRTIRDQLRQFGPEEATVLVDIEFDSTEIAIIINGVPQFSRTVPIGTYQMQMAFARAMS
HHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHC
LPTSRDMEMLQGLVIPVNSVDSDKTGMTETDPGMAGVLRILGELTDELRRSIDFYLNQSE
CCCCCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
NVEIAQILLGGPGGGLEQLHEFFTQRLSIPTSQIDPIGSLSLQVDEEKYPSTQRSGLGIV
CCEEEEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEECHHHCCCCCCCCCEEE
LGLGMREV
EECCCCCC
>Mature Secondary Structure
MVKSFSSLFGKSHRGVGVEIAPERVNVVQIRKQRQGLKLESLTSVPVPEGIVADGQITDP
CCCCHHHHHCCCCCCCCEEECCCCCHHHHHHHHHCCCCHHHCCCCCCCCCEEECCCCCCC
PAMAQLIQQALAESKIKVSRVATGVPGRDSIVRIIPVPSELDDKELRDMVLNHEAGLYLP
HHHHHHHHHHHHHCCEEHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEECC
YPREEADVDYQKLGYFVDEDGIEKVRVLLVATRKEVTDTYISTFEQAGLQIGVLEINSFA
CCCCCCCCCHHHHCCEECCCCHHHEEHHEEHHHHHHHHHHHHHHHHCCCEEEEEEECCHH
LIRTIRDQLRQFGPEEATVLVDIEFDSTEIAIIINGVPQFSRTVPIGTYQMQMAFARAMS
HHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHC
LPTSRDMEMLQGLVIPVNSVDSDKTGMTETDPGMAGVLRILGELTDELRRSIDFYLNQSE
CCCCCCHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
NVEIAQILLGGPGGGLEQLHEFFTQRLSIPTSQIDPIGSLSLQVDEEKYPSTQRSGLGIV
CCEEEEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEECHHHCCCCCCCCCEEE
LGLGMREV
EECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA