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The map label for this gene is ycf55 [C]

Identifier: 17228455

GI number: 17228455

Start: 1115407

End: 1117173

Strand: Direct

Name: ycf55 [C]

Synonym: alr0960

Alternate gene names: 17228455

Gene position: 1115407-1117173 (Clockwise)

Preceding gene: 17228452

Following gene: 17228458

Centisome position: 17.39

GC content: 40.18

Gene sequence:

>1767_bases
ATGAGCGATCGCCCTTTAAAATTATTATTAGTTGATCAAGACCCCATTTTCCGCCTGGGACTACGGGTAGCGTTGGAAGC
CATGCCTAACATAGAGGTGGTATCGGAAGCACCAACAGATACAGCAGCTTTACAAATACTTGCGGAACTTGCCCAGATTA
ACCCCAATCAAGTGGACTTGGTAATTTTAGAATTAGGGAATAGTCGCTCAATTGATAGTCAACAGCAAGGATTACAACTC
TGCCAGCAACTCAAAGCTACATACCCCACACTCCCAACTTTGCTCTTAAGTGCGGTTCCCGATGCAGGACTAATCATGGC
AGCGAGGGCTGCTGGTGTGCGGGGTTACTGTCCTAAAGGCACTCCCATTTCCCAATTAGTTACCGTTATAGAAGCCGTTG
CGGCTGGTAATTCTTACTGGTTGGCTGAAACAGTAAACCCAGAAATTACTCCCTCTGTTGCTGCGGTTGCGCCTCGTTTA
CCTTTGGCTAAGTGGCGGCAAAATTTACATTTATCAAGTGTGAATTATATTGATCATGCGCTGCAAGAAGTCACAGCACA
ATTACAAACTCCTGGTTTACCAATATTAGATCGAGCAGTTCTAGCCGGGAAGCGAAGAGAACTTTTAGCAAGTCGCTGGT
TGCTCAATCAGGTACTAATTCTACCCCAAGAAAAACAACAGCCAACATTAACTTCCTCAGTTGCCAAATCTCTGCCTATA
GTACCCCCACCAATACCCACAATTAACACCTCAGACTCACAACCAACATCCACATCGCCCCCGCTACTCAGTCCCAGAGC
TTTACAAGCCAATTTATTTGCAGCTTGTATTAATAAACTACAATTTCCTTTAAATAATGTTTCAGATTCGGTTTTAGAGA
TTGATATATTTCGTGAAGATAAAAAACGAGAACTCCTATATCTAATTTTGCAAAAACTGGCTCAACAATTAGATGCTTTG
CGTAATGCCCAAATTACAGCTAATCAGTTAGTAGAATTACAGCCTGTAATCTTACATGACTTATGGCAAGCAGTAATTAC
AGACTTTTTCGGTAAGTTTTCTAGAGTGCAAGTAGGCAAGCGTAATCTAGAAATTGTCACCGTATTATTGCAGAATCCAG
AAGTTGTACAAACAGCGATTCTGAATAAGATTCCTTTAGGATTAGAATTATTTTCTTATCTGTTATTGCAAACAGATTTA
AGAGTAGAGCATCATACTTACCAAGCAGGTAGCTCTGAAGCCAACTTCCACGCAGAAATGTTACTAGAAAACTTGATAAT
TCAGGTAGCTAACAGCGTAGTCCAACCACTATTAAATTATTTGGCAGACATAGAAGAAATTAAACAAGATTTCTATGTTA
AATCTTTAATGTCTACACGAGAACTGGAACGTTTTAGAAATGATTTATCATGGAAATATCGATTAAATAACTATGTGAAC
GAAGCCAAAGCAATTTTTGAAAGCCGCTACGAACTACTTGTGTTTGCGCCCCGTGGTATTGCCCAAATTTCAATTTATGC
TCCCCGCAATGACGAACTAGCACAATTGTCTGGAGTACCTTTAGTAGTTACATTAGGTTTAGAATTTCGAGATGCGATCG
CTCCTCGTTTACAATCGCTATTATCTGTCTTAGGTAGTGGCATTGTCTTTGTGCTAACCCAAATCATTGGTAGAGGTTTA
GGCTTAATTGGTCGCGGAATTATTCAAGGTATTGGTAGCGTATCTTTTGACAAAAATTTTAAACGTGATAGTGAACGAAC
GAAGTAG

Upstream 100 bases:

>100_bases
TATCTTTCATTTATGAGTGGACGAAAACAGGTGACAATGAGGAGGGATTTTACTTTTTACGAGTTGCAGCCAAGACAGTG
CTGGTGTATTTGAGCAGACT

Downstream 100 bases:

>100_bases
TTAACGCGATGTGCGACTTATTCTTAAAACCCCTCTCCATAGCTTGCTTCCCGCAGGGTACCTCTCCCCTGCAAGGAGAG
AGGCTTCAAAACCTTCATTT

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 588; Mature: 587

Protein sequence:

>588_residues
MSDRPLKLLLVDQDPIFRLGLRVALEAMPNIEVVSEAPTDTAALQILAELAQINPNQVDLVILELGNSRSIDSQQQGLQL
CQQLKATYPTLPTLLLSAVPDAGLIMAARAAGVRGYCPKGTPISQLVTVIEAVAAGNSYWLAETVNPEITPSVAAVAPRL
PLAKWRQNLHLSSVNYIDHALQEVTAQLQTPGLPILDRAVLAGKRRELLASRWLLNQVLILPQEKQQPTLTSSVAKSLPI
VPPPIPTINTSDSQPTSTSPPLLSPRALQANLFAACINKLQFPLNNVSDSVLEIDIFREDKKRELLYLILQKLAQQLDAL
RNAQITANQLVELQPVILHDLWQAVITDFFGKFSRVQVGKRNLEIVTVLLQNPEVVQTAILNKIPLGLELFSYLLLQTDL
RVEHHTYQAGSSEANFHAEMLLENLIIQVANSVVQPLLNYLADIEEIKQDFYVKSLMSTRELERFRNDLSWKYRLNNYVN
EAKAIFESRYELLVFAPRGIAQISIYAPRNDELAQLSGVPLVVTLGLEFRDAIAPRLQSLLSVLGSGIVFVLTQIIGRGL
GLIGRGIIQGIGSVSFDKNFKRDSERTK

Sequences:

>Translated_588_residues
MSDRPLKLLLVDQDPIFRLGLRVALEAMPNIEVVSEAPTDTAALQILAELAQINPNQVDLVILELGNSRSIDSQQQGLQL
CQQLKATYPTLPTLLLSAVPDAGLIMAARAAGVRGYCPKGTPISQLVTVIEAVAAGNSYWLAETVNPEITPSVAAVAPRL
PLAKWRQNLHLSSVNYIDHALQEVTAQLQTPGLPILDRAVLAGKRRELLASRWLLNQVLILPQEKQQPTLTSSVAKSLPI
VPPPIPTINTSDSQPTSTSPPLLSPRALQANLFAACINKLQFPLNNVSDSVLEIDIFREDKKRELLYLILQKLAQQLDAL
RNAQITANQLVELQPVILHDLWQAVITDFFGKFSRVQVGKRNLEIVTVLLQNPEVVQTAILNKIPLGLELFSYLLLQTDL
RVEHHTYQAGSSEANFHAEMLLENLIIQVANSVVQPLLNYLADIEEIKQDFYVKSLMSTRELERFRNDLSWKYRLNNYVN
EAKAIFESRYELLVFAPRGIAQISIYAPRNDELAQLSGVPLVVTLGLEFRDAIAPRLQSLLSVLGSGIVFVLTQIIGRGL
GLIGRGIIQGIGSVSFDKNFKRDSERTK
>Mature_587_residues
SDRPLKLLLVDQDPIFRLGLRVALEAMPNIEVVSEAPTDTAALQILAELAQINPNQVDLVILELGNSRSIDSQQQGLQLC
QQLKATYPTLPTLLLSAVPDAGLIMAARAAGVRGYCPKGTPISQLVTVIEAVAAGNSYWLAETVNPEITPSVAAVAPRLP
LAKWRQNLHLSSVNYIDHALQEVTAQLQTPGLPILDRAVLAGKRRELLASRWLLNQVLILPQEKQQPTLTSSVAKSLPIV
PPPIPTINTSDSQPTSTSPPLLSPRALQANLFAACINKLQFPLNNVSDSVLEIDIFREDKKRELLYLILQKLAQQLDALR
NAQITANQLVELQPVILHDLWQAVITDFFGKFSRVQVGKRNLEIVTVLLQNPEVVQTAILNKIPLGLELFSYLLLQTDLR
VEHHTYQAGSSEANFHAEMLLENLIIQVANSVVQPLLNYLADIEEIKQDFYVKSLMSTRELERFRNDLSWKYRLNNYVNE
AKAIFESRYELLVFAPRGIAQISIYAPRNDELAQLSGVPLVVTLGLEFRDAIAPRLQSLLSVLGSGIVFVLTQIIGRGLG
LIGRGIIQGIGSVSFDKNFKRDSERTK

Specific function: This Protein Activates The Expression Of The Nitrate Reductase (Narghji) And Formate Dehydrogenase-N (Fdnghi) Operons And Represses The Transcription Of The Fumarate Reductase (Frdabcd) Operon In Response To A Nitrate/Nitrite Induction Signal Transmitted

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR016837
- InterPro:   IPR022552 [H]

Pfam domain/function: PF12452 DUF3685; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 65103; Mature: 64972

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDRPLKLLLVDQDPIFRLGLRVALEAMPNIEVVSEAPTDTAALQILAELAQINPNQVDL
CCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEE
VILELGNSRSIDSQQQGLQLCQQLKATYPTLPTLLLSAVPDAGLIMAARAAGVRGYCPKG
EEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCC
TPISQLVTVIEAVAAGNSYWLAETVNPEITPSVAAVAPRLPLAKWRQNLHLSSVNYIDHA
CCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHCCCCCHHHHHHCCCCCHHHHHHHH
LQEVTAQLQTPGLPILDRAVLAGKRRELLASRWLLNQVLILPQEKQQPTLTSSVAKSLPI
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC
VPPPIPTINTSDSQPTSTSPPLLSPRALQANLFAACINKLQFPLNNVSDSVLEIDIFRED
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCC
KKRELLYLILQKLAQQLDALRNAQITANQLVELQPVILHDLWQAVITDFFGKFSRVQVGK
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCC
RNLEIVTVLLQNPEVVQTAILNKIPLGLELFSYLLLQTDLRVEHHTYQAGSSEANFHAEM
CCEEEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHH
LLENLIIQVANSVVQPLLNYLADIEEIKQDFYVKSLMSTRELERFRNDLSWKYRLNNYVN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHH
EAKAIFESRYELLVFAPRGIAQISIYAPRNDELAQLSGVPLVVTLGLEFRDAIAPRLQSL
HHHHHHHCCCEEEEECCCCCEEEEEECCCCCCHHHHCCCCEEEEECCHHHHHHHHHHHHH
LSVLGSGIVFVLTQIIGRGLGLIGRGIIQGIGSVSFDKNFKRDSERTK
HHHHCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDRPLKLLLVDQDPIFRLGLRVALEAMPNIEVVSEAPTDTAALQILAELAQINPNQVDL
CCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEE
VILELGNSRSIDSQQQGLQLCQQLKATYPTLPTLLLSAVPDAGLIMAARAAGVRGYCPKG
EEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCC
TPISQLVTVIEAVAAGNSYWLAETVNPEITPSVAAVAPRLPLAKWRQNLHLSSVNYIDHA
CCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHCCCCCHHHHHHCCCCCHHHHHHHH
LQEVTAQLQTPGLPILDRAVLAGKRRELLASRWLLNQVLILPQEKQQPTLTSSVAKSLPI
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC
VPPPIPTINTSDSQPTSTSPPLLSPRALQANLFAACINKLQFPLNNVSDSVLEIDIFRED
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCC
KKRELLYLILQKLAQQLDALRNAQITANQLVELQPVILHDLWQAVITDFFGKFSRVQVGK
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCC
RNLEIVTVLLQNPEVVQTAILNKIPLGLELFSYLLLQTDLRVEHHTYQAGSSEANFHAEM
CCEEEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHH
LLENLIIQVANSVVQPLLNYLADIEEIKQDFYVKSLMSTRELERFRNDLSWKYRLNNYVN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHH
EAKAIFESRYELLVFAPRGIAQISIYAPRNDELAQLSGVPLVVTLGLEFRDAIAPRLQSL
HHHHHHHCCCEEEEECCCCCEEEEEECCCCCCHHHHCCCCEEEEECCHHHHHHHHHHHHH
LSVLGSGIVFVLTQIIGRGLGLIGRGIIQGIGSVSFDKNFKRDSERTK
HHHHCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]