Definition | Ureaplasma parvum serovar 3 str. ATCC 27815 chromosome, complete genome. |
---|---|
Accession | NC_010503 |
Length | 751,679 |
Click here to switch to the map view.
The map label for this gene is yfjD [C]
Identifier: 170762444
GI number: 170762444
Start: 88669
End: 89997
Strand: Direct
Name: yfjD [C]
Synonym: UPA3_0071
Alternate gene names: 170762444
Gene position: 88669-89997 (Clockwise)
Preceding gene: 170761970
Following gene: 170761919
Centisome position: 11.8
GC content: 25.58
Gene sequence:
>1329_bases ATGATTGAAGATTCCCAGGAAACGATCAGTACTCAAGCAAATTTTAGCGTTGGCATTTTAGTAATATTAGCAATAATTAC TCTTATTTTGATATGTTTTTCAGTCTTTTTTTCAGCAGCCGAAACTGCTATTACCAGTGTCACAACCGTAAAATGAAAAA CTGAAAGCAATAAAATTAAATCAAAAACAATTACTAATGTTGTTTATAAAATGATTAATAATTATACAATTACCTTGGCA ACCATTTTAATTGGTAACACATTAGTAAATACAGCATCATCAACAATCGCAGGTTTATTTTTTGCAGGTATAATGAAATC TTTTAGTACAACAAGTAACGCTGAAGCTATTGGTACAGGAATTGCAACAGGAATTATAACTTTAATTGTTTTAATATTTG GCGAATTTATTCCTAAAAATTTTGCTAAGAAAAATCCGATTAAAGTTCTTAAATTAGTAGCTTATCCCTTAAATTGTTTC TATATACTTTTTTGGCCATTAACTTGATCTTTAAATCGAATTTTTAATAAAAAATCACAAAATATTATCACAGCCACTGA AGAAGAATTAAAATCGCTTATTGAAGTTATTCGTCATGAAGGAACTTTAGATAGTCAAGAAGCATTAATTATTAATAAAG CAATTTTATTTGATGATATATTAATTAAACAAAAAATGGTTCCATGAACACAAGTTGTTAAAATTAATGAAAATAAAACT GTTCTTCAAAGTTTTGAAATTTTTAATTCAACTGGATTTTCGCGTTTGGTTGTAGTCAATAAAAACGATGAGGTTGTTGG TATTATTTATTTAAAAAAAATTATTAAATATCTTCTTAACGAACCTAATAAAATCATTAGAACTATCATGCAAACACCTT TATTAATAAACCAAAAAGATACATTATATGATGGTTTAAGAACAATGCAATTTCAAAGAATTCATTTAGGAATTGTTGTT GATAATATTACTGAAAAAAATCCTATAGGAATCATTACATTAGAAAACATTACTGAAGAATTAACTGGTAATGTTTATGA TGAAACTGATAATGAGAACGAAATAAAAGAAATTCAAATCGTTAATGAAACAACTTGACGTGTTGATGCTAAAACTAACG CTAAATTATTTTTACATCAATATATTGACAAAGATATTGAAGTTAACGATGATATTAGTATGGGCAAATATATTTCTAAA ATTAATAAAAATCGCGCATTTAAAAACCGCCAATTAATTAACACTCCTAATATGTATATTGAAACTTTTAAAGATGTAAG AACAAATCAATTTGCCTTTTTAATTGAAAAAAAGATTAATCAATCCTAA
Upstream 100 bases:
>100_bases TTTTAAAAAATAAAAGTTTTTAATTCAATTAATATTTATATATAATAAAATAGAAGTCAAATTATGACTTGATAATAATT TTTATAACAAAAGGAAACTT
Downstream 100 bases:
>100_bases ACAATGAGATAAAAAAACTAGTTTTTAAAAACTAGTTTTTTTAATTTTAATTCTTCATACATTTCTTTAATACGAGAATT AAAATGATTTAAACCACTTT
Product: hemolysin
Products: NA
Alternate protein names: VXpSPT7_orf424 [H]
Number of amino acids: Translated: 442; Mature: 442
Protein sequence:
>442_residues MIEDSQETISTQANFSVGILVILAIITLILICFSVFFSAAETAITSVTTVKWKTESNKIKSKTITNVVYKMINNYTITLA TILIGNTLVNTASSTIAGLFFAGIMKSFSTTSNAEAIGTGIATGIITLIVLIFGEFIPKNFAKKNPIKVLKLVAYPLNCF YILFWPLTWSLNRIFNKKSQNIITATEEELKSLIEVIRHEGTLDSQEALIINKAILFDDILIKQKMVPWTQVVKINENKT VLQSFEIFNSTGFSRLVVVNKNDEVVGIIYLKKIIKYLLNEPNKIIRTIMQTPLLINQKDTLYDGLRTMQFQRIHLGIVV DNITEKNPIGIITLENITEELTGNVYDETDNENEIKEIQIVNETTWRVDAKTNAKLFLHQYIDKDIEVNDDISMGKYISK INKNRAFKNRQLINTPNMYIETFKDVRTNQFAFLIEKKINQS
Sequences:
>Translated_442_residues MIEDSQETISTQANFSVGILVILAIITLILICFSVFFSAAETAITSVTTVK*KTESNKIKSKTITNVVYKMINNYTITLA TILIGNTLVNTASSTIAGLFFAGIMKSFSTTSNAEAIGTGIATGIITLIVLIFGEFIPKNFAKKNPIKVLKLVAYPLNCF YILFWPLT*SLNRIFNKKSQNIITATEEELKSLIEVIRHEGTLDSQEALIINKAILFDDILIKQKMVP*TQVVKINENKT VLQSFEIFNSTGFSRLVVVNKNDEVVGIIYLKKIIKYLLNEPNKIIRTIMQTPLLINQKDTLYDGLRTMQFQRIHLGIVV DNITEKNPIGIITLENITEELTGNVYDETDNENEIKEIQIVNETT*RVDAKTNAKLFLHQYIDKDIEVNDDISMGKYISK INKNRAFKNRQLINTPNMYIETFKDVRTNQFAFLIEKKINQS >Mature_442_residues MIEDSQETISTQANFSVGILVILAIITLILICFSVFFSAAETAITSVTTVK*KTESNKIKSKTITNVVYKMINNYTITLA TILIGNTLVNTASSTIAGLFFAGIMKSFSTTSNAEAIGTGIATGIITLIVLIFGEFIPKNFAKKNPIKVLKLVAYPLNCF YILFWPLT*SLNRIFNKKSQNIITATEEELKSLIEVIRHEGTLDSQEALIINKAILFDDILIKQKMVP*TQVVKINENKT VLQSFEIFNSTGFSRLVVVNKNDEVVGIIYLKKIIKYLLNEPNKIIRTIMQTPLLINQKDTLYDGLRTMQFQRIHLGIVV DNITEKNPIGIITLENITEELTGNVYDETDNENEIKEIQIVNETT*RVDAKTNAKLFLHQYIDKDIEVNDDISMGKYISK INKNRAFKNRQLINTPNMYIETFKDVRTNQFAFLIEKKINQS
Specific function: Unknown
COG id: COG1253
COG function: function code R; Hemolysins and related proteins containing CBS domains
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 CBS domains [H]
Homologues:
Organism=Homo sapiens, GI310128564, Length=403, Percent_Identity=24.8138957816377, Blast_Score=81, Evalue=2e-15, Organism=Escherichia coli, GI145693175, Length=330, Percent_Identity=23.030303030303, Blast_Score=72, Evalue=7e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000644 - InterPro: IPR002550 [H]
Pfam domain/function: PF00571 CBS; PF01595 DUF21 [H]
EC number: NA
Molecular weight: Translated: 49430; Mature: 49430
Theoretical pI: Translated: 9.08; Mature: 9.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIEDSQETISTQANFSVGILVILAIITLILICFSVFFSAAETAITSVTTVKKTESNKIKS CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHH KTITNVVYKMINNYTITLATILIGNTLVNTASSTIAGLFFAGIMKSFSTTSNAEAIGTGI HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH ATGIITLIVLIFGEFIPKNFAKKNPIKVLKLVAYPLNCFYILFWPLTSLNRIFNKKSQNI HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE ITATEEELKSLIEVIRHEGTLDSQEALIINKAILFDDILIKQKMVPTQVVKINENKTVLQ EECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH SFEIFNSTGFSRLVVVNKNDEVVGIIYLKKIIKYLLNEPNKIIRTIMQTPLLINQKDTLY HHHHHCCCCCEEEEEECCCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHCCCEECCCHHHH DGLRTMQFQRIHLGIVVDNITEKNPIGIITLENITEELTGNVYDETDNENEIKEIQIVNE HHHHHHHHEEEEEEEEEECCCCCCCEEEEEHHHHHHHHCCCCCCCCCCCCCCCEEEEECH TTRVDAKTNAKLFLHQYIDKDIEVNDDISMGKYISKINKNRAFKNRQLINTPNMYIETFK HHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH DVRTNQFAFLIEKKINQS HHCCCHHHHHHHHHCCCC >Mature Secondary Structure MIEDSQETISTQANFSVGILVILAIITLILICFSVFFSAAETAITSVTTVKKTESNKIKS CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHH KTITNVVYKMINNYTITLATILIGNTLVNTASSTIAGLFFAGIMKSFSTTSNAEAIGTGI HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH ATGIITLIVLIFGEFIPKNFAKKNPIKVLKLVAYPLNCFYILFWPLTSLNRIFNKKSQNI HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE ITATEEELKSLIEVIRHEGTLDSQEALIINKAILFDDILIKQKMVPTQVVKINENKTVLQ EECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH SFEIFNSTGFSRLVVVNKNDEVVGIIYLKKIIKYLLNEPNKIIRTIMQTPLLINQKDTLY HHHHHCCCCCEEEEEECCCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHCCCEECCCHHHH DGLRTMQFQRIHLGIVVDNITEKNPIGIITLENITEELTGNVYDETDNENEIKEIQIVNE HHHHHHHHEEEEEEEEEECCCCCCCEEEEEHHHHHHHHCCCCCCCCCCCCCCCEEEEECH TTRVDAKTNAKLFLHQYIDKDIEVNDDISMGKYISKINKNRAFKNRQLINTPNMYIETFK HHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH DVRTNQFAFLIEKKINQS HHCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7569993 [H]