Definition Ureaplasma parvum serovar 3 str. ATCC 27815 chromosome, complete genome.
Accession NC_010503
Length 751,679

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The map label for this gene is yfjD [C]

Identifier: 170762444

GI number: 170762444

Start: 88669

End: 89997

Strand: Direct

Name: yfjD [C]

Synonym: UPA3_0071

Alternate gene names: 170762444

Gene position: 88669-89997 (Clockwise)

Preceding gene: 170761970

Following gene: 170761919

Centisome position: 11.8

GC content: 25.58

Gene sequence:

>1329_bases
ATGATTGAAGATTCCCAGGAAACGATCAGTACTCAAGCAAATTTTAGCGTTGGCATTTTAGTAATATTAGCAATAATTAC
TCTTATTTTGATATGTTTTTCAGTCTTTTTTTCAGCAGCCGAAACTGCTATTACCAGTGTCACAACCGTAAAATGAAAAA
CTGAAAGCAATAAAATTAAATCAAAAACAATTACTAATGTTGTTTATAAAATGATTAATAATTATACAATTACCTTGGCA
ACCATTTTAATTGGTAACACATTAGTAAATACAGCATCATCAACAATCGCAGGTTTATTTTTTGCAGGTATAATGAAATC
TTTTAGTACAACAAGTAACGCTGAAGCTATTGGTACAGGAATTGCAACAGGAATTATAACTTTAATTGTTTTAATATTTG
GCGAATTTATTCCTAAAAATTTTGCTAAGAAAAATCCGATTAAAGTTCTTAAATTAGTAGCTTATCCCTTAAATTGTTTC
TATATACTTTTTTGGCCATTAACTTGATCTTTAAATCGAATTTTTAATAAAAAATCACAAAATATTATCACAGCCACTGA
AGAAGAATTAAAATCGCTTATTGAAGTTATTCGTCATGAAGGAACTTTAGATAGTCAAGAAGCATTAATTATTAATAAAG
CAATTTTATTTGATGATATATTAATTAAACAAAAAATGGTTCCATGAACACAAGTTGTTAAAATTAATGAAAATAAAACT
GTTCTTCAAAGTTTTGAAATTTTTAATTCAACTGGATTTTCGCGTTTGGTTGTAGTCAATAAAAACGATGAGGTTGTTGG
TATTATTTATTTAAAAAAAATTATTAAATATCTTCTTAACGAACCTAATAAAATCATTAGAACTATCATGCAAACACCTT
TATTAATAAACCAAAAAGATACATTATATGATGGTTTAAGAACAATGCAATTTCAAAGAATTCATTTAGGAATTGTTGTT
GATAATATTACTGAAAAAAATCCTATAGGAATCATTACATTAGAAAACATTACTGAAGAATTAACTGGTAATGTTTATGA
TGAAACTGATAATGAGAACGAAATAAAAGAAATTCAAATCGTTAATGAAACAACTTGACGTGTTGATGCTAAAACTAACG
CTAAATTATTTTTACATCAATATATTGACAAAGATATTGAAGTTAACGATGATATTAGTATGGGCAAATATATTTCTAAA
ATTAATAAAAATCGCGCATTTAAAAACCGCCAATTAATTAACACTCCTAATATGTATATTGAAACTTTTAAAGATGTAAG
AACAAATCAATTTGCCTTTTTAATTGAAAAAAAGATTAATCAATCCTAA

Upstream 100 bases:

>100_bases
TTTTAAAAAATAAAAGTTTTTAATTCAATTAATATTTATATATAATAAAATAGAAGTCAAATTATGACTTGATAATAATT
TTTATAACAAAAGGAAACTT

Downstream 100 bases:

>100_bases
ACAATGAGATAAAAAAACTAGTTTTTAAAAACTAGTTTTTTTAATTTTAATTCTTCATACATTTCTTTAATACGAGAATT
AAAATGATTTAAACCACTTT

Product: hemolysin

Products: NA

Alternate protein names: VXpSPT7_orf424 [H]

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MIEDSQETISTQANFSVGILVILAIITLILICFSVFFSAAETAITSVTTVKWKTESNKIKSKTITNVVYKMINNYTITLA
TILIGNTLVNTASSTIAGLFFAGIMKSFSTTSNAEAIGTGIATGIITLIVLIFGEFIPKNFAKKNPIKVLKLVAYPLNCF
YILFWPLTWSLNRIFNKKSQNIITATEEELKSLIEVIRHEGTLDSQEALIINKAILFDDILIKQKMVPWTQVVKINENKT
VLQSFEIFNSTGFSRLVVVNKNDEVVGIIYLKKIIKYLLNEPNKIIRTIMQTPLLINQKDTLYDGLRTMQFQRIHLGIVV
DNITEKNPIGIITLENITEELTGNVYDETDNENEIKEIQIVNETTWRVDAKTNAKLFLHQYIDKDIEVNDDISMGKYISK
INKNRAFKNRQLINTPNMYIETFKDVRTNQFAFLIEKKINQS

Sequences:

>Translated_442_residues
MIEDSQETISTQANFSVGILVILAIITLILICFSVFFSAAETAITSVTTVK*KTESNKIKSKTITNVVYKMINNYTITLA
TILIGNTLVNTASSTIAGLFFAGIMKSFSTTSNAEAIGTGIATGIITLIVLIFGEFIPKNFAKKNPIKVLKLVAYPLNCF
YILFWPLT*SLNRIFNKKSQNIITATEEELKSLIEVIRHEGTLDSQEALIINKAILFDDILIKQKMVP*TQVVKINENKT
VLQSFEIFNSTGFSRLVVVNKNDEVVGIIYLKKIIKYLLNEPNKIIRTIMQTPLLINQKDTLYDGLRTMQFQRIHLGIVV
DNITEKNPIGIITLENITEELTGNVYDETDNENEIKEIQIVNETT*RVDAKTNAKLFLHQYIDKDIEVNDDISMGKYISK
INKNRAFKNRQLINTPNMYIETFKDVRTNQFAFLIEKKINQS
>Mature_442_residues
MIEDSQETISTQANFSVGILVILAIITLILICFSVFFSAAETAITSVTTVK*KTESNKIKSKTITNVVYKMINNYTITLA
TILIGNTLVNTASSTIAGLFFAGIMKSFSTTSNAEAIGTGIATGIITLIVLIFGEFIPKNFAKKNPIKVLKLVAYPLNCF
YILFWPLT*SLNRIFNKKSQNIITATEEELKSLIEVIRHEGTLDSQEALIINKAILFDDILIKQKMVP*TQVVKINENKT
VLQSFEIFNSTGFSRLVVVNKNDEVVGIIYLKKIIKYLLNEPNKIIRTIMQTPLLINQKDTLYDGLRTMQFQRIHLGIVV
DNITEKNPIGIITLENITEELTGNVYDETDNENEIKEIQIVNETT*RVDAKTNAKLFLHQYIDKDIEVNDDISMGKYISK
INKNRAFKNRQLINTPNMYIETFKDVRTNQFAFLIEKKINQS

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=403, Percent_Identity=24.8138957816377, Blast_Score=81, Evalue=2e-15,
Organism=Escherichia coli, GI145693175, Length=330, Percent_Identity=23.030303030303, Blast_Score=72, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000644
- InterPro:   IPR002550 [H]

Pfam domain/function: PF00571 CBS; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 49430; Mature: 49430

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEDSQETISTQANFSVGILVILAIITLILICFSVFFSAAETAITSVTTVKKTESNKIKS
CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHH
KTITNVVYKMINNYTITLATILIGNTLVNTASSTIAGLFFAGIMKSFSTTSNAEAIGTGI
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
ATGIITLIVLIFGEFIPKNFAKKNPIKVLKLVAYPLNCFYILFWPLTSLNRIFNKKSQNI
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
ITATEEELKSLIEVIRHEGTLDSQEALIINKAILFDDILIKQKMVPTQVVKINENKTVLQ
EECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH
SFEIFNSTGFSRLVVVNKNDEVVGIIYLKKIIKYLLNEPNKIIRTIMQTPLLINQKDTLY
HHHHHCCCCCEEEEEECCCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHCCCEECCCHHHH
DGLRTMQFQRIHLGIVVDNITEKNPIGIITLENITEELTGNVYDETDNENEIKEIQIVNE
HHHHHHHHEEEEEEEEEECCCCCCCEEEEEHHHHHHHHCCCCCCCCCCCCCCCEEEEECH
TTRVDAKTNAKLFLHQYIDKDIEVNDDISMGKYISKINKNRAFKNRQLINTPNMYIETFK
HHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
DVRTNQFAFLIEKKINQS
HHCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MIEDSQETISTQANFSVGILVILAIITLILICFSVFFSAAETAITSVTTVKKTESNKIKS
CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHH
KTITNVVYKMINNYTITLATILIGNTLVNTASSTIAGLFFAGIMKSFSTTSNAEAIGTGI
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
ATGIITLIVLIFGEFIPKNFAKKNPIKVLKLVAYPLNCFYILFWPLTSLNRIFNKKSQNI
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
ITATEEELKSLIEVIRHEGTLDSQEALIINKAILFDDILIKQKMVPTQVVKINENKTVLQ
EECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH
SFEIFNSTGFSRLVVVNKNDEVVGIIYLKKIIKYLLNEPNKIIRTIMQTPLLINQKDTLY
HHHHHCCCCCEEEEEECCCCCEEEHHHHHHHHHHHHCCCHHHHHHHHHCCCEECCCHHHH
DGLRTMQFQRIHLGIVVDNITEKNPIGIITLENITEELTGNVYDETDNENEIKEIQIVNE
HHHHHHHHEEEEEEEEEECCCCCCCEEEEEHHHHHHHHCCCCCCCCCCCCCCCEEEEECH
TTRVDAKTNAKLFLHQYIDKDIEVNDDISMGKYISKINKNRAFKNRQLINTPNMYIETFK
HHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
DVRTNQFAFLIEKKINQS
HHCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7569993 [H]