Click here to switch to the map view.

The map label for this gene is dnaN

Identifier: 170761919

GI number: 170761919

Start: 95616

End: 96755

Strand: Direct

Name: dnaN

Synonym: UPA3_0078

Alternate gene names: 170761919

Gene position: 95616-96755 (Clockwise)

Preceding gene: 170762444

Following gene: 170762045

Centisome position: 12.72

GC content: 23.6

Gene sequence:

>1140_bases
ATGGAAGTTTTTATTTCTATAAAAAAATTAATTGAAGCAATAAAATTTAGTACAACAATTGCTAATACAAACAATGCAAA
TGCTTTATTATTAGGTGTTTTGATTGAAGTTAGTCAAAATAAAATTAGTTTTAAGACGACAAATAATCAAGTGAGTGGTT
ATAAAGAAATTACTGAAGGATTTGAATATTTTAATAGTGGAAAAGTTTTAGTTACAGCTAAGATTATTTTAGGATTAATT
TCTAAGCTTAAAGATAAATCTGTTTTATTAAAACAAATTGACACAAATATTTTATTAATTAAAACTGAAAATTTTGAAAC
TCAAATTAATACAATGAATATTGAAGGCTTTCCTAATTTAAACTTTAGTTTAGAAGATTACGTTAAAATCAGTTTGCCGC
ATCAAATTATGCAAGAGATTAATACAAAGGTTTTACCCAACGTTTTGAACAGTCAAGGAATTGAAAAAATTCAACCGATT
TCTGGAATTTTGATTGATACTCAAACTTTAGAAAATAAGTTGATTGCTATTGGTACAGATAAAATTAAAGCTTCATGTTT
AATAAGAGAATATATGGGTGAAAAATTTAAATTTATTGTCTCTTATTCAACAATGAAATTGATTATCGAAATCCTTAAAA
ATGTTGAATATAGTAATAATCAAACTGTTGATTTTTATGTTCGAAGTAGAAGTTTAATTTTTAAAATTAATGATGCAATT
TTACAAACAAGAATGATTGATGGTGTTTATCCAAATATTTACTCAATTTTTGATGAAACAAATGAAGAAAATACATATGT
TTTTGATCGTCGTTTATTGATAGAAATTATTGAACGGGGTATGAATATTGTTATGCAAGAACAAAACCCTAAAATTAGTA
TTAGAATAGACAAAAATGAAGCAGAAATCAGTTTAACAACTTTTGAAATTGGTAATATGAAAGAAAAAATGTCAATAGTT
AATTTAAACAATAAAAGTGCTGAGTTTATTTTAAACCCTAGTTTGCTAGCTCATGTTTTAAAAAATTTTGATAACAACGA
TGTAACTTTTAAAGTTAAAGATGAAATTTTAAGACCTATTATTTTTATCGATACCAAAGATGTTGGATTTAAACAGATTT
TATCAAGAATAAAAAATTAA

Upstream 100 bases:

>100_bases
ATAAATAAATAAAAAATAAATTATATTTTAAAGCATCACGCTTTTTTGAATTTATATCTTTTATAATATAAATAATAAAA
AATGAGGATTTTAATAAAAC

Downstream 100 bases:

>100_bases
AGAAAACAGTTTATTATTATTTAAATATTAATATTTTTCTAATAAATATCACTTACATTTACTAGTTGTTTAACCAAATT
TTTAATATTTTATATATGTT

Product: DNA polymerase III, beta subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MEVFISIKKLIEAIKFSTTIANTNNANALLLGVLIEVSQNKISFKTTNNQVSGYKEITEGFEYFNSGKVLVTAKIILGLI
SKLKDKSVLLKQIDTNILLIKTENFETQINTMNIEGFPNLNFSLEDYVKISLPHQIMQEINTKVLPNVLNSQGIEKIQPI
SGILIDTQTLENKLIAIGTDKIKASCLIREYMGEKFKFIVSYSTMKLIIEILKNVEYSNNQTVDFYVRSRSLIFKINDAI
LQTRMIDGVYPNIYSIFDETNEENTYVFDRRLLIEIIERGMNIVMQEQNPKISIRIDKNEAEISLTTFEIGNMKEKMSIV
NLNNKSAEFILNPSLLAHVLKNFDNNDVTFKVKDEILRPIIFIDTKDVGFKQILSRIKN

Sequences:

>Translated_379_residues
MEVFISIKKLIEAIKFSTTIANTNNANALLLGVLIEVSQNKISFKTTNNQVSGYKEITEGFEYFNSGKVLVTAKIILGLI
SKLKDKSVLLKQIDTNILLIKTENFETQINTMNIEGFPNLNFSLEDYVKISLPHQIMQEINTKVLPNVLNSQGIEKIQPI
SGILIDTQTLENKLIAIGTDKIKASCLIREYMGEKFKFIVSYSTMKLIIEILKNVEYSNNQTVDFYVRSRSLIFKINDAI
LQTRMIDGVYPNIYSIFDETNEENTYVFDRRLLIEIIERGMNIVMQEQNPKISIRIDKNEAEISLTTFEIGNMKEKMSIV
NLNNKSAEFILNPSLLAHVLKNFDNNDVTFKVKDEILRPIIFIDTKDVGFKQILSRIKN
>Mature_379_residues
MEVFISIKKLIEAIKFSTTIANTNNANALLLGVLIEVSQNKISFKTTNNQVSGYKEITEGFEYFNSGKVLVTAKIILGLI
SKLKDKSVLLKQIDTNILLIKTENFETQINTMNIEGFPNLNFSLEDYVKISLPHQIMQEINTKVLPNVLNSQGIEKIQPI
SGILIDTQTLENKLIAIGTDKIKASCLIREYMGEKFKFIVSYSTMKLIIEILKNVEYSNNQTVDFYVRSRSLIFKINDAI
LQTRMIDGVYPNIYSIFDETNEENTYVFDRRLLIEIIERGMNIVMQEQNPKISIRIDKNEAEISLTTFEIGNMKEKMSIV
NLNNKSAEFILNPSLLAHVLKNFDNNDVTFKVKDEILRPIIFIDTKDVGFKQILSRIKN

Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The beta chain is required for initiation of replication once it is clamped

COG id: COG0592

COG function: function code L; DNA polymerase sliding clamp subunit (PCNA homolog)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001001
- InterPro:   IPR022635
- InterPro:   IPR022637
- InterPro:   IPR022634 [H]

Pfam domain/function: PF00712 DNA_pol3_beta; PF02767 DNA_pol3_beta_2; PF02768 DNA_pol3_beta_3 [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 43372; Mature: 43372

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVFISIKKLIEAIKFSTTIANTNNANALLLGVLIEVSQNKISFKTTNNQVSGYKEITEG
CCEEEEHHHHHHHHHHHHEEECCCCCCEEEEEEEEEECCCEEEEEECCCCCCCHHHHHHH
FEYFNSGKVLVTAKIILGLISKLKDKSVLLKQIDTNILLIKTENFETQINTMNIEGFPNL
HHHHCCCCEEEEHHHHHHHHHHHCCHHHHHHHCCCCEEEEEECCCEEEEEEEEECCCCCC
NFSLEDYVKISLPHQIMQEINTKVLPNVLNSQGIEKIQPISGILIDTQTLENKLIAIGTD
CCCHHHEEEEECCHHHHHHHCHHHHHHHHCCCCCCHHCCCCCEEEECHHHCCCEEEEECC
KIKASCLIREYMGEKFKFIVSYSTMKLIIEILKNVEYSNNQTVDFYVRSRSLIFKINDAI
HHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEHHHH
LQTRMIDGVYPNIYSIFDETNEENTYVFDRRLLIEIIERGMNIVMQEQNPKISIRIDKNE
HHHHHHCCCCCHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCEEEEECCCCEEEEEEECCC
AEISLTTFEIGNMKEKMSIVNLNNKSAEFILNPSLLAHVLKNFDNNDVTFKVKDEILRPI
CEEEEEEEEECCCHHHEEEEECCCCCCEEEECHHHHHHHHHCCCCCCEEEEEHHHHCCCE
IFIDTKDVGFKQILSRIKN
EEEECCCCCHHHHHHHHCC
>Mature Secondary Structure
MEVFISIKKLIEAIKFSTTIANTNNANALLLGVLIEVSQNKISFKTTNNQVSGYKEITEG
CCEEEEHHHHHHHHHHHHEEECCCCCCEEEEEEEEEECCCEEEEEECCCCCCCHHHHHHH
FEYFNSGKVLVTAKIILGLISKLKDKSVLLKQIDTNILLIKTENFETQINTMNIEGFPNL
HHHHCCCCEEEEHHHHHHHHHHHCCHHHHHHHCCCCEEEEEECCCEEEEEEEEECCCCCC
NFSLEDYVKISLPHQIMQEINTKVLPNVLNSQGIEKIQPISGILIDTQTLENKLIAIGTD
CCCHHHEEEEECCHHHHHHHCHHHHHHHHCCCCCCHHCCCCCEEEECHHHCCCEEEEECC
KIKASCLIREYMGEKFKFIVSYSTMKLIIEILKNVEYSNNQTVDFYVRSRSLIFKINDAI
HHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEHHHH
LQTRMIDGVYPNIYSIFDETNEENTYVFDRRLLIEIIERGMNIVMQEQNPKISIRIDKNE
HHHHHHCCCCCHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCEEEEECCCCEEEEEEECCC
AEISLTTFEIGNMKEKMSIVNLNNKSAEFILNPSLLAHVLKNFDNNDVTFKVKDEILRPI
CEEEEEEEEECCCHHHEEEEECCCCCCEEEECHHHHHHHHHCCCCCCEEEEEHHHHCCCE
IFIDTKDVGFKQILSRIKN
EEEECCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7764984 [H]