Definition | Ureaplasma parvum serovar 3 str. ATCC 27815 chromosome, complete genome. |
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Accession | NC_010503 |
Length | 751,679 |
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The map label for this gene is 170762242
Identifier: 170762242
GI number: 170762242
Start: 44395
End: 44757
Strand: Direct
Name: 170762242
Synonym: UPA3_0040
Alternate gene names: NA
Gene position: 44395-44757 (Clockwise)
Preceding gene: 170762322
Following gene: 170762159
Centisome position: 5.91
GC content: 22.59
Gene sequence:
>363_bases ATGAGTTCATTACCAGTTATTATTTTAGTAATTGGCATTTTTGGGTCTATTTTTCTAGTAATAGGATATATTCCCCAAGT AATTAAAGTTATCAAAACAAAACGAACAGATGGAATTTCATTAACATTTTTAATTTCTTTAAACATCGCTTGTTTTCTAT TTGTAATATATAGTATATTAGTAATGATTTTTAACAAACATAATGGTATTCCTACTGCTTTACCATTATGTCTTGCAAAC ACCATAGTAGGAATTTTAGGTCTAGTTATTTTAATTTATAAAGTTAAAAACATTAAAAAAGCTAAATTATATTTAATGGA TGAAAAGACATATTATGAAAAATATGTCTTAAATAATTTATAA
Upstream 100 bases:
>100_bases GGTGTTTATTTAAAAAAACAAATCACTCCACTACAATTTCCTCGTCCTTGAAATCTAATTCTTAAAAAACCACTCTAATT ATTTATAAAGGAGTTATATT
Downstream 100 bases:
>100_bases TGTCTCCAATTAGTATTGAATTAATAATTCAAATAAGTATTGGATTAAGTGCTAGCCTAATTTTATTGTTTGCTTTCTTA CCACAAACACTTTTAACTAT
Product: PQ loop repeat-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 120; Mature: 119
Protein sequence:
>120_residues MSSLPVIILVIGIFGSIFLVIGYIPQVIKVIKTKRTDGISLTFLISLNIACFLFVIYSILVMIFNKHNGIPTALPLCLAN TIVGILGLVILIYKVKNIKKAKLYLMDEKTYYEKYVLNNL
Sequences:
>Translated_120_residues MSSLPVIILVIGIFGSIFLVIGYIPQVIKVIKTKRTDGISLTFLISLNIACFLFVIYSILVMIFNKHNGIPTALPLCLAN TIVGILGLVILIYKVKNIKKAKLYLMDEKTYYEKYVLNNL >Mature_119_residues SSLPVIILVIGIFGSIFLVIGYIPQVIKVIKTKRTDGISLTFLISLNIACFLFVIYSILVMIFNKHNGIPTALPLCLANT IVGILGLVILIYKVKNIKKAKLYLMDEKTYYEKYVLNNL
Specific function: Unknown
COG id: COG4095
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential)
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To U.parvum UU007, UU008 and UU042
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y041_UREPA (Q9PRA4)
Other databases:
- EMBL: AF222894 - RefSeq: NP_077871.1 - GeneID: 875957 - GenomeReviews: AF222894_GR - KEGG: uur:UU041 - HOGENOM: HBG263886 - OMA: NIDIFGY - ProtClustDB: CLSK227687 - BioCyc: UURE95667:UU041-MONOMER - InterPro: IPR006603 - SMART: SM00679
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13467; Mature: 13336
Theoretical pI: Translated: 10.07; Mature: 10.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
HASH(0x11572444)-; HASH(0x19125374)-; HASH(0x193adb88)-;
Cys/Met content:
1.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSLPVIILVIGIFGSIFLVIGYIPQVIKVIKTKRTDGISLTFLISLNIACFLFVIYSIL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHH VMIFNKHNGIPTALPLCLANTIVGILGLVILIYKVKNIKKAKLYLMDEKTYYEKYVLNNL HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEECCHHHHHHHHHCCH >Mature Secondary Structure SSLPVIILVIGIFGSIFLVIGYIPQVIKVIKTKRTDGISLTFLISLNIACFLFVIYSIL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHH VMIFNKHNGIPTALPLCLANTIVGILGLVILIYKVKNIKKAKLYLMDEKTYYEKYVLNNL HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEECCHHHHHHHHHCCH
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11048724