Definition | Ureaplasma parvum serovar 3 str. ATCC 27815 chromosome, complete genome. |
---|---|
Accession | NC_010503 |
Length | 751,679 |
Click here to switch to the map view.
The map label for this gene is trxB
Identifier: 170762195
GI number: 170762195
Start: 90973
End: 91902
Strand: Reverse
Name: trxB
Synonym: UPA3_0073
Alternate gene names: 170762195
Gene position: 91902-90973 (Counterclockwise)
Preceding gene: 170762410
Following gene: 170762179
Centisome position: 12.23
GC content: 29.35
Gene sequence:
>930_bases ATGAATCAAGAAGTTTACGATTTAGTAATCATTGGCGCAGGTCCAGCCGGTTTAGCTGCTGCTGTTTATGCTAAACGTTC TGGATTAAATGTGATCATTGTTGAAAAACAATTCCCAGGAGGAAAAATAGCATTAACATCAAATGTAGAAAATTATTTAG GTATCAATAGTATTCCAGGACCTGAATTGGCTTATAAAATGTACGAACAAGTCTTAAATTTAAATGTTTCTATTATTTAT GAAGCTGCTGATGAAATATCTTTAAAAGAAAAATATAAAAAAATTAAATTAACTACACAAACATTAATTACTAAAACTGT AATTATTGCAACAGGAACAGAAAATAGACGGTTAAACATTTTAGGTGAATTAGAATTTGAAAACAAGGGAATTAGTTATT GCGCTATTTGTGATGGACCACTTTATAAAAATAAAGCTGTCTCTGTGATTGGATCTGGTAACTCTGCTGTGGAAGAGGCC ATATATTTAGCTACAATTGCTAAAGAAGTTCATTTAATTGCCAATAAACCACAATTTAAAGCAGAACAACAATTAGTACA AATTGCAAATAACACACCTAATATAAAAATTTATTACAATAAACAAACATTCGAATTTTTTGGTCATCAGTTTTTAGAAG GTTTAAAATTTAGAGATTTAATCACAAACGAAGTAACTACACTAAATATTGAAGCTAATTTCACTTTTATTGGCCTATTG CCTTCAAGAATTAATACAAATAATTTATGTATTTTTAATGAGGTAAACGGATTTATTACAACTGATAAAAATATGCAAAC TAGTGTTTGTGGTATTTTTGCAGCCGGTGATATTGTTGATAAAAATGTTCGACAAATTGCGACTGCTACAAATGATGGAG TCATTGCAGCACTTTATGCCAAAGAGTACATTACAAGAAATAATTGATAA
Upstream 100 bases:
>100_bases GTTTTATAAAAAGAAAGACCAAATTCATAAATTTGGAGAATTAAGAAAGCCAGAAGAATTTTTATTTTATTGTCATAAAT AATAAAGAAAAGGATTTTAA
Downstream 100 bases:
>100_bases TGATTCTAACAAATTCACGTTTAGTGAATTTGTTAAAGAAGATATTTATACTAACACTGATTATTCATCCACAGACTATA AAGTTATTTTATATTCGTTT
Product: thioredoxin-disulfide reductase
Products: NA
Alternate protein names: TRXR
Number of amino acids: Translated: 309; Mature: 309
Protein sequence:
>309_residues MNQEVYDLVIIGAGPAGLAAAVYAKRSGLNVIIVEKQFPGGKIALTSNVENYLGINSIPGPELAYKMYEQVLNLNVSIIY EAADEISLKEKYKKIKLTTQTLITKTVIIATGTENRRLNILGELEFENKGISYCAICDGPLYKNKAVSVIGSGNSAVEEA IYLATIAKEVHLIANKPQFKAEQQLVQIANNTPNIKIYYNKQTFEFFGHQFLEGLKFRDLITNEVTTLNIEANFTFIGLL PSRINTNNLCIFNEVNGFITTDKNMQTSVCGIFAAGDIVDKNVRQIATATNDGVIAALYAKEYITRNNW
Sequences:
>Translated_309_residues MNQEVYDLVIIGAGPAGLAAAVYAKRSGLNVIIVEKQFPGGKIALTSNVENYLGINSIPGPELAYKMYEQVLNLNVSIIY EAADEISLKEKYKKIKLTTQTLITKTVIIATGTENRRLNILGELEFENKGISYCAICDGPLYKNKAVSVIGSGNSAVEEA IYLATIAKEVHLIANKPQFKAEQQLVQIANNTPNIKIYYNKQTFEFFGHQFLEGLKFRDLITNEVTTLNIEANFTFIGLL PSRINTNNLCIFNEVNGFITTDKNMQTSVCGIFAAGDIVDKNVRQIATATNDGVIAALYAKEYITRNN* >Mature_309_residues MNQEVYDLVIIGAGPAGLAAAVYAKRSGLNVIIVEKQFPGGKIALTSNVENYLGINSIPGPELAYKMYEQVLNLNVSIIY EAADEISLKEKYKKIKLTTQTLITKTVIIATGTENRRLNILGELEFENKGISYCAICDGPLYKNKAVSVIGSGNSAVEEA IYLATIAKEVHLIANKPQFKAEQQLVQIANNTPNIKIYYNKQTFEFFGHQFLEGLKFRDLITNEVTTLNIEANFTFIGLL PSRINTNNLCIFNEVNGFITTDKNMQTSVCGIFAAGDIVDKNVRQIATATNDGVIAALYAKEYITRNN*
Specific function: Unknown
COG id: COG0492
COG function: function code O; Thioredoxin reductase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family
Homologues:
Organism=Escherichia coli, GI1787114, Length=312, Percent_Identity=35.5769230769231, Blast_Score=185, Evalue=4e-48, Organism=Escherichia coli, GI87081763, Length=312, Percent_Identity=36.5384615384615, Blast_Score=166, Evalue=2e-42, Organism=Saccharomyces cerevisiae, GI6320560, Length=311, Percent_Identity=32.475884244373, Blast_Score=162, Evalue=5e-41, Organism=Saccharomyces cerevisiae, GI6321898, Length=314, Percent_Identity=31.8471337579618, Blast_Score=159, Evalue=6e-40,
Paralogues:
None
Copy number: 808 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): TRXB_UREPA (Q9PR71)
Other databases:
- EMBL: AF222894 - RefSeq: NP_077904.1 - ProteinModelPortal: Q9PR71 - SMR: Q9PR71 - GeneID: 876144 - GenomeReviews: AF222894_GR - KEGG: uur:UU074 - HOGENOM: HBG669726 - OMA: TNDQMET - ProtClustDB: CLSK2298762 - BioCyc: UURE95667:UU074-MONOMER - BRENDA: 1.8.1.9 - GO: GO:0005737 - InterPro: IPR013027 - InterPro: IPR008255 - InterPro: IPR001327 - InterPro: IPR000103 - PRINTS: PR00368 - PRINTS: PR00469
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2
EC number: =1.8.1.9
Molecular weight: Translated: 33946; Mature: 33946
Theoretical pI: Translated: 6.54; Mature: 6.54
Prosite motif: PS00573 PYRIDINE_REDOX_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQEVYDLVIIGAGPAGLAAAVYAKRSGLNVIIVEKQFPGGKIALTSNVENYLGINSIPG CCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCHHHCCCCCCCC PELAYKMYEQVLNLNVSIIYEAADEISLKEKYKKIKLTTQTLITKTVIIATGTENRRLNI HHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHEEEEEHHHEEEEEEEEEECCCCCEEEE LGELEFENKGISYCAICDGPLYKNKAVSVIGSGNSAVEEAIYLATIAKEVHLIANKPQFK EEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHEEEECCCCHH AEQQLVQIANNTPNIKIYYNKQTFEFFGHQFLEGLKFRDLITNEVTTLNIEANFTFIGLL HHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCHHHHHCCCEEEEEEEECEEEEEEE PSRINTNNLCIFNEVNGFITTDKNMQTSVCGIFAAGDIVDKNVRQIATATNDGVIAALYA CCCCCCCCEEEEECCCCEEEECCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCEEEEEEE KEYITRNN HHHHCCCC >Mature Secondary Structure MNQEVYDLVIIGAGPAGLAAAVYAKRSGLNVIIVEKQFPGGKIALTSNVENYLGINSIPG CCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCHHHCCCCCCCC PELAYKMYEQVLNLNVSIIYEAADEISLKEKYKKIKLTTQTLITKTVIIATGTENRRLNI HHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHEEEEEHHHEEEEEEEEEECCCCCEEEE LGELEFENKGISYCAICDGPLYKNKAVSVIGSGNSAVEEAIYLATIAKEVHLIANKPQFK EEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHEEEECCCCHH AEQQLVQIANNTPNIKIYYNKQTFEFFGHQFLEGLKFRDLITNEVTTLNIEANFTFIGLL HHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCHHHHHCCCEEEEEEEECEEEEEEE PSRINTNNLCIFNEVNGFITTDKNMQTSVCGIFAAGDIVDKNVRQIATATNDGVIAALYA CCCCCCCCEEEEECCCCEEEECCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCEEEEEEE KEYITRNN HHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11048724