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The map label for this gene is smpB

Identifier: 170762068

GI number: 170762068

Start: 72636

End: 73061

Strand: Direct

Name: smpB

Synonym: UPA3_0057

Alternate gene names: 170762068

Gene position: 72636-73061 (Clockwise)

Preceding gene: 170762284

Following gene: 170762338

Centisome position: 9.66

GC content: 27.7

Gene sequence:

>426_bases
ATGATTGTATCAAATAAACACGCACGTCGAAATTATGAATTACTAGATTTTTTTGAATGTGGAATCGTTTTAAAAGGAAC
TGAAGTTAAATCTATTTCACGTGCTAATTGCTCAATTAATGAAGCTTATGTCCAAATAATTAAAAATCAAGCTTTAATTT
TAAATATGCATGTTGCAAATTTTTTTGAGGGTAATAACTTTAATCAAGATCCATACCGGAATCGAAAACTATTATTACAC
AAAAAAGAAATTATTAGACTTCAACATTTAGTGAAAACACAACATATGACAATTGTGCCAACCAAAATTTATTGGAAAAA
TAATAAACTAAAGATAGAGATTGCTTTAGGAAAAGGTAAACAGCTTCATGATAAACGTGAGGATATAAAAAAAAGAGATT
TAGCGCGTGAAACGCGTTTATTTTAA

Upstream 100 bases:

>100_bases
CATTTTTATATAAAATATAACTTTTTTGCGATTAAAATTTCTTTTGAACTAATAAACTTTACAATTTATTAATAAAGAAA
GGTTTTTAGTATTTTTAATA

Downstream 100 bases:

>100_bases
TATTAAAGGAGGAATTATAATGAAAAGTGTTTGAAAGATTTTGTTAATAAAACATAAATTTTTATTTTTCTTTATTTTAT
TTTTAAATTTAGTACAAGTT

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MIVSNKHARRNYELLDFFECGIVLKGTEVKSISRANCSINEAYVQIIKNQALILNMHVANFFEGNNFNQDPYRNRKLLLH
KKEIIRLQHLVKTQHMTIVPTKIYWKNNKLKIEIALGKGKQLHDKREDIKKRDLARETRLF

Sequences:

>Translated_141_residues
MIVSNKHARRNYELLDFFECGIVLKGTEVKSISRANCSINEAYVQIIKNQALILNMHVANFFEGNNFNQDPYRNRKLLLH
KKEIIRLQHLVKTQHMTIVPTKIYWKNNKLKIEIALGKGKQLHDKREDIKKRDLARETRLF
>Mature_141_residues
MIVSNKHARRNYELLDFFECGIVLKGTEVKSISRANCSINEAYVQIIKNQALILNMHVANFFEGNNFNQDPYRNRKLLLH
KKEIIRLQHLVKTQHMTIVPTKIYWKNNKLKIEIALGKGKQLHDKREDIKKRDLARETRLF

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=133, Percent_Identity=36.8421052631579, Blast_Score=93, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_UREP2 (B1AI43)

Other databases:

- EMBL:   CP000942
- RefSeq:   YP_001752137.1
- ProteinModelPortal:   B1AI43
- SMR:   B1AI43
- GeneID:   6155673
- GenomeReviews:   CP000942_GR
- KEGG:   upa:UPA3_0057
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- BioCyc:   UPAR505682:UPA3_0057-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 16700; Mature: 16700

Theoretical pI: Translated: 10.63; Mature: 10.63

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVSNKHARRNYELLDFFECGIVLKGTEVKSISRANCSINEAYVQIIKNQALILNMHVAN
CCCCCCCCCCCCCEEEHEECCEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEHE
FFEGNNFNQDPYRNRKLLLHKKEIIRLQHLVKTQHMTIVPTKIYWKNNKLKIEIALGKGK
EECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCEEEEEEEEEEECCEEEEEEEECCCC
QLHDKREDIKKRDLARETRLF
CCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIVSNKHARRNYELLDFFECGIVLKGTEVKSISRANCSINEAYVQIIKNQALILNMHVAN
CCCCCCCCCCCCCEEEHEECCEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEHE
FFEGNNFNQDPYRNRKLLLHKKEIIRLQHLVKTQHMTIVPTKIYWKNNKLKIEIALGKGK
EECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCEEEEEEEEEEECCEEEEEEEECCCC
QLHDKREDIKKRDLARETRLF
CCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA