Definition | Ureaplasma parvum serovar 3 str. ATCC 27815 chromosome, complete genome. |
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Accession | NC_010503 |
Length | 751,679 |
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The map label for this gene is atpA [H]
Identifier: 170761987
GI number: 170761987
Start: 173056
End: 175455
Strand: Reverse
Name: atpA [H]
Synonym: UPA3_0138
Alternate gene names: 170761987
Gene position: 175455-173056 (Counterclockwise)
Preceding gene: 170761937
Following gene: 170762352
Centisome position: 23.34
GC content: 31.67
Gene sequence:
>2400_bases ATGACAGATAATAAAAATCATTCATTAATTAGTGATATAAAATCACAAATTAAGAAATTTTCTGAAAAAGCTTTAACCTT AGAGGTCGGCAATGTAATTTCGTTAGGTGATGGAATTGTATTGGTTGATGGCCTTGATAATGTCATGTTAAATGAAATTG TACGTTTTGAAAATGGTGTTGAAGGAATGGCTTTAAACCTAGAAGAAGATGCTGTTGGTGTTGTTCTTTTAGGTGATTAT TCAAATATTAAAGAAGGCGATCGTGTTTATCGTACAAAAAGAATTGTTGAAGTTCCTGTTGGGGATGTAATGTTAGGTCG TGTTGTTGACGCTTTAGGTAAGGCAGTTGATAATAAAGGTAATATTGTTGCAAATAAATTTAGTGTAATTGAAAAAATTG CACCTGGTGTTATGGACCGTAAATCTGTTCATCAACCACTTGAAACCGGAATTTTATCAATTGATGCAATGTTCCCAATT GGTAAGGGCCAAAGAGAATTAATTATTGGTGACCGACAGACTGGAAAAACAACAATTGCAATTGATGCTATTATTAATCA AAAAGGCCGTAATGTAAATTGTGTTTATGTAGCAATTGGTCAAAAAAACTCAACAATCGCAAATGTTGTTCGTGAACTTG AAGCTCATGGAGCAATGGAATATACAACTGTTGTTACAGCTAATGCTTCAGAATTACCTGCTTTGCAATATATTGCTCCC TTTACAGGAGTAACAATTGCTGAAGAGTGAATGCATCAAGGAAAAGATGTTTTAATTGTTTATGATGATCTAAGCAAACA TGCTATTGCTTATCGTACTTTATCCTTATTATTACGTCGTCCGCCTGGTCGTGAAGCATATCCTGGAGATGTTTTTTACT TACACAGTCGTTTATTAGAACGTGCATGCAAACTAAAAGATGAATTAGGGGCAGGATCTATTACTGCTTTACCAATTATT GAAACACAAGCTGGTGATATTTCAGCTTATATTCCAACAAATGTAATTTCAATTACTGATGGGCAAATTTTTATGATGAC ATCATTATTTAATGCTGGTCAACGTCCTGCAATTGATGCAGGGCAATCAGTTAGTCGGGTAGGTTCTGCTGCACAAATTA AATCAGTTAAACAAACTGGAGCATCATTAAAATTAGAATTAGCTAACTATCGCGAACTTGAAGCATTTAGTCAATTCGGT AGTGATTTGGATGATGAAACTAAACGTATTCTAAAACTTGGTAAAGCAGTTATGGCTGTTATTAAGCAAGCTCCTAATAA ACCTTATAATCAAACTGATGAAGCGATCATTTTGTTTACCGTTAAAGAAAAACTTATTCCTCAAGTTCCAGTAGAACGTA TTCAAGATTTTAAAGAGTACTTATTAAATTACTTTAAAGGAACAAAACTACGTGCTGATCTTGAAGATAAGAAAGCTTTT GATAAAGAAAATACCCCAGCATTTAGATGTGCTATACAAAAAGCAATTAACAGTTTCTTAAATAATTCACAAGATTTTAA ACCTTGTGAAGAAGCTGAACAAACAGCCTTTGATAAATTCTTTAATGAGAATGAATCAATTGTTGTTGATGGTGAAAATG ATTTTAATTTTATTAATGAAGAAGTTAGTTTAAAACCTACAACAGAAACATCTGAAGCTGTTCAAATAGAAGAAAAAGTT CAAGATTTCGTTGAACCACAAGAAATTCTTGAAACTAATAAAATGGAAGAAAATCATATTTTTGAAGAAGTTGAGCCAGA AAAAATTATCTGTGAACATCATGAATTTGAAATAGCTGAAAACCAAGAAAAAATCGAAGGTCAACAAGTTTTAGAAGATA CAAACCATGAATATTCAATTTATGAAACCGTTGAACAAAGCGGTGAGGTAGATAATGATGAATCTAAAGATGATGATTTA GAAGTCTTAGTACCAGTTGCTGAAATTGAGCATGATGAAGCAATTCTAGATGAACGCGAGAATCGTAATTGAGTCTTCTC AGATTCAGCTGTTTCTGAAGTTGAAAAACAAACAATTATGATTTCAATTTCATCAAATGAAGCAGAACAATTGTTTGATA ATGCTAAAAGTGTTGTTTTCTTTAAAGTAACACCTAAATATCCAGTTGAAAAAGTATTAGTTTATGTCACAAGTCCAGTA CAAAAAGTTGTTGGTGAATTTGATTTATTAAAGATTGATGTTAATTCAGTAAACACTTCTTGAAATAAATATCGTTCAAG TTCAGTAATTTCATCACGTAAAGAATATTTAGAATATTTTAACTCACACAAAGAAGCACATGCTTTATTAGCTTCTAAAG TTTATAAATATCGTAAGCCAAAAGATTTAGCAAGTTTTAATATGAATAAAGGACCAAGTGGTTTCACTTATCTTAAATAA
Upstream 100 bases:
>100_bases GTGGTATATCATTAAAAATCAACTTGGAAATAATTGATTCTTCTCTAAAAACAAAACTAAATCAAATCATCAATACGAAA GAGAAAGAAGGTGCGTAAAA
Downstream 100 bases:
>100_bases TGAATCAAATTAAAATGAATAAAAGCTTTGCTGAATTCAGCAAACTTCCAAAAATTAAACAAGTCTTTACGCCTTGATTT ATAGCAGCATTAGTTATATT
Product: ATP synthase F1, alpha subunit
Products: NA
Alternate protein names: ATP synthase F1 sector subunit alpha; F-ATPase subunit alpha [H]
Number of amino acids: Translated: 799; Mature: 798
Protein sequence:
>799_residues MTDNKNHSLISDIKSQIKKFSEKALTLEVGNVISLGDGIVLVDGLDNVMLNEIVRFENGVEGMALNLEEDAVGVVLLGDY SNIKEGDRVYRTKRIVEVPVGDVMLGRVVDALGKAVDNKGNIVANKFSVIEKIAPGVMDRKSVHQPLETGILSIDAMFPI GKGQRELIIGDRQTGKTTIAIDAIINQKGRNVNCVYVAIGQKNSTIANVVRELEAHGAMEYTTVVTANASELPALQYIAP FTGVTIAEEWMHQGKDVLIVYDDLSKHAIAYRTLSLLLRRPPGREAYPGDVFYLHSRLLERACKLKDELGAGSITALPII ETQAGDISAYIPTNVISITDGQIFMMTSLFNAGQRPAIDAGQSVSRVGSAAQIKSVKQTGASLKLELANYRELEAFSQFG SDLDDETKRILKLGKAVMAVIKQAPNKPYNQTDEAIILFTVKEKLIPQVPVERIQDFKEYLLNYFKGTKLRADLEDKKAF DKENTPAFRCAIQKAINSFLNNSQDFKPCEEAEQTAFDKFFNENESIVVDGENDFNFINEEVSLKPTTETSEAVQIEEKV QDFVEPQEILETNKMEENHIFEEVEPEKIICEHHEFEIAENQEKIEGQQVLEDTNHEYSIYETVEQSGEVDNDESKDDDL EVLVPVAEIEHDEAILDERENRNWVFSDSAVSEVEKQTIMISISSNEAEQLFDNAKSVVFFKVTPKYPVEKVLVYVTSPV QKVVGEFDLLKIDVNSVNTSWNKYRSSSVISSRKEYLEYFNSHKEAHALLASKVYKYRKPKDLASFNMNKGPSGFTYLK
Sequences:
>Translated_799_residues MTDNKNHSLISDIKSQIKKFSEKALTLEVGNVISLGDGIVLVDGLDNVMLNEIVRFENGVEGMALNLEEDAVGVVLLGDY SNIKEGDRVYRTKRIVEVPVGDVMLGRVVDALGKAVDNKGNIVANKFSVIEKIAPGVMDRKSVHQPLETGILSIDAMFPI GKGQRELIIGDRQTGKTTIAIDAIINQKGRNVNCVYVAIGQKNSTIANVVRELEAHGAMEYTTVVTANASELPALQYIAP FTGVTIAEE*MHQGKDVLIVYDDLSKHAIAYRTLSLLLRRPPGREAYPGDVFYLHSRLLERACKLKDELGAGSITALPII ETQAGDISAYIPTNVISITDGQIFMMTSLFNAGQRPAIDAGQSVSRVGSAAQIKSVKQTGASLKLELANYRELEAFSQFG SDLDDETKRILKLGKAVMAVIKQAPNKPYNQTDEAIILFTVKEKLIPQVPVERIQDFKEYLLNYFKGTKLRADLEDKKAF DKENTPAFRCAIQKAINSFLNNSQDFKPCEEAEQTAFDKFFNENESIVVDGENDFNFINEEVSLKPTTETSEAVQIEEKV QDFVEPQEILETNKMEENHIFEEVEPEKIICEHHEFEIAENQEKIEGQQVLEDTNHEYSIYETVEQSGEVDNDESKDDDL EVLVPVAEIEHDEAILDERENRN*VFSDSAVSEVEKQTIMISISSNEAEQLFDNAKSVVFFKVTPKYPVEKVLVYVTSPV QKVVGEFDLLKIDVNSVNTS*NKYRSSSVISSRKEYLEYFNSHKEAHALLASKVYKYRKPKDLASFNMNKGPSGFTYLK >Mature_798_residues TDNKNHSLISDIKSQIKKFSEKALTLEVGNVISLGDGIVLVDGLDNVMLNEIVRFENGVEGMALNLEEDAVGVVLLGDYS NIKEGDRVYRTKRIVEVPVGDVMLGRVVDALGKAVDNKGNIVANKFSVIEKIAPGVMDRKSVHQPLETGILSIDAMFPIG KGQRELIIGDRQTGKTTIAIDAIINQKGRNVNCVYVAIGQKNSTIANVVRELEAHGAMEYTTVVTANASELPALQYIAPF TGVTIAEE*MHQGKDVLIVYDDLSKHAIAYRTLSLLLRRPPGREAYPGDVFYLHSRLLERACKLKDELGAGSITALPIIE TQAGDISAYIPTNVISITDGQIFMMTSLFNAGQRPAIDAGQSVSRVGSAAQIKSVKQTGASLKLELANYRELEAFSQFGS DLDDETKRILKLGKAVMAVIKQAPNKPYNQTDEAIILFTVKEKLIPQVPVERIQDFKEYLLNYFKGTKLRADLEDKKAFD KENTPAFRCAIQKAINSFLNNSQDFKPCEEAEQTAFDKFFNENESIVVDGENDFNFINEEVSLKPTTETSEAVQIEEKVQ DFVEPQEILETNKMEENHIFEEVEPEKIICEHHEFEIAENQEKIEGQQVLEDTNHEYSIYETVEQSGEVDNDESKDDDLE VLVPVAEIEHDEAILDERENRN*VFSDSAVSEVEKQTIMISISSNEAEQLFDNAKSVVFFKVTPKYPVEKVLVYVTSPVQ KVVGEFDLLKIDVNSVNTS*NKYRSSSVISSRKEYLEYFNSHKEAHALLASKVYKYRKPKDLASFNMNKGPSGFTYLK
Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit [H]
COG id: COG0056
COG function: function code C; F0F1-type ATP synthase, alpha subunit
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATPase alpha/beta chains family [H]
Homologues:
Organism=Homo sapiens, GI50345984, Length=445, Percent_Identity=55.5056179775281, Blast_Score=493, Evalue=1e-139, Organism=Homo sapiens, GI4757810, Length=445, Percent_Identity=55.5056179775281, Blast_Score=493, Evalue=1e-139, Organism=Homo sapiens, GI32189394, Length=313, Percent_Identity=25.5591054313099, Blast_Score=96, Evalue=1e-19, Organism=Homo sapiens, GI19913428, Length=296, Percent_Identity=29.0540540540541, Blast_Score=95, Evalue=3e-19, Organism=Homo sapiens, GI19913426, Length=294, Percent_Identity=28.5714285714286, Blast_Score=94, Evalue=5e-19, Organism=Escherichia coli, GI1790172, Length=471, Percent_Identity=52.6539278131635, Blast_Score=495, Evalue=1e-141, Organism=Escherichia coli, GI1790170, Length=315, Percent_Identity=26.984126984127, Blast_Score=109, Evalue=8e-25, Organism=Escherichia coli, GI1788251, Length=303, Percent_Identity=27.0627062706271, Blast_Score=100, Evalue=4e-22, Organism=Caenorhabditis elegans, GI71988063, Length=450, Percent_Identity=54.6666666666667, Blast_Score=494, Evalue=1e-140, Organism=Caenorhabditis elegans, GI71988080, Length=450, Percent_Identity=54.6666666666667, Blast_Score=494, Evalue=1e-140, Organism=Caenorhabditis elegans, GI71988074, Length=450, Percent_Identity=49.7777777777778, Blast_Score=439, Evalue=1e-123, Organism=Caenorhabditis elegans, GI17510931, Length=371, Percent_Identity=29.1105121293801, Blast_Score=105, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17570191, Length=292, Percent_Identity=29.4520547945205, Blast_Score=100, Evalue=4e-21, Organism=Caenorhabditis elegans, GI25144756, Length=310, Percent_Identity=24.5161290322581, Blast_Score=92, Evalue=2e-18, Organism=Saccharomyces cerevisiae, GI6319370, Length=499, Percent_Identity=52.5050100200401, Blast_Score=511, Evalue=1e-145, Organism=Saccharomyces cerevisiae, GI6319603, Length=290, Percent_Identity=29.3103448275862, Blast_Score=107, Evalue=9e-24, Organism=Saccharomyces cerevisiae, GI6322581, Length=319, Percent_Identity=25.705329153605, Blast_Score=95, Evalue=4e-20, Organism=Drosophila melanogaster, GI24658560, Length=463, Percent_Identity=54.6436285097192, Blast_Score=499, Evalue=1e-141, Organism=Drosophila melanogaster, GI281361666, Length=294, Percent_Identity=28.5714285714286, Blast_Score=104, Evalue=2e-22, Organism=Drosophila melanogaster, GI24646341, Length=294, Percent_Identity=28.5714285714286, Blast_Score=104, Evalue=2e-22, Organism=Drosophila melanogaster, GI17136796, Length=294, Percent_Identity=28.5714285714286, Blast_Score=104, Evalue=2e-22, Organism=Drosophila melanogaster, GI24638766, Length=313, Percent_Identity=25.2396166134185, Blast_Score=94, Evalue=3e-19, Organism=Drosophila melanogaster, GI28574560, Length=310, Percent_Identity=25.8064516129032, Blast_Score=90, Evalue=7e-18, Organism=Drosophila melanogaster, GI20129479, Length=248, Percent_Identity=30.241935483871, Blast_Score=74, Evalue=6e-13,
Paralogues:
None
Copy number: 9,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020003 - InterPro: IPR000194 - InterPro: IPR005294 - InterPro: IPR017458 - InterPro: IPR018118 - InterPro: IPR000793 - InterPro: IPR004100 [H]
Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]
EC number: =3.6.3.14 [H]
Molecular weight: Translated: 88836; Mature: 88704
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: PS00152 ATPASE_ALPHA_BETA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDNKNHSLISDIKSQIKKFSEKALTLEVGNVISLGDGIVLVDGLDNVMLNEIVRFENGV CCCCCCCHHHHHHHHHHHHHHHHEEEEEECCEEEECCCEEEECCCCHHHHHHHHHHCCCC EGMALNLEEDAVGVVLLGDYSNIKEGDRVYRTKRIVEVPVGDVMLGRVVDALGKAVDNKG CCEEEEECCCCEEEEEECCCCCCCCCHHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCCC NIVANKFSVIEKIAPGVMDRKSVHQPLETGILSIDAMFPIGKGQRELIIGDRQTGKTTIA CEEEHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCEEEEECCCCCCEEEE IDAIINQKGRNVNCVYVAIGQKNSTIANVVRELEAHGAMEYTTVVTANASELPALQYIAP EEEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHCC FTGVTIAEEMHQGKDVLIVYDDLSKHAIAYRTLSLLLRRPPGREAYPGDVFYLHSRLLER CCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH ACKLKDELGAGSITALPIIETQAGDISAYIPTNVISITDGQIFMMTSLFNAGQRPAIDAG HHHHHHHCCCCCEEEEEEEECCCCCEEEECCCCEEEECCCCEEEEEHHHCCCCCCCCCCC QSVSRVGSAAQIKSVKQTGASLKLELANYRELEAFSQFGSDLDDETKRILKLGKAVMAVI CHHHHHCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH KQAPNKPYNQTDEAIILFTVKEKLIPQVPVERIQDFKEYLLNYFKGTKLRADLEDKKAFD HHCCCCCCCCCCCEEEEEEECHHCCCCCCHHHHHHHHHHHHHHHCCCCEECCCHHHHHCC KENTPAFRCAIQKAINSFLNNSQDFKPCEEAEQTAFDKFFNENESIVVDGENDFNFINEE CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCE VSLKPTTETSEAVQIEEKVQDFVEPQEILETNKMEENHIFEEVEPEKIICEHHEFEIAEN EEECCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHCCCCHHEECCCCEEECCC QEKIEGQQVLEDTNHEYSIYETVEQSGEVDNDESKDDDLEVLVPVAEIEHDEAILDEREN HHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHCCCCHHHHCCCCC RNVFSDSAVSEVEKQTIMISISSNEAEQLFDNAKSVVFFKVTPKYPVEKVLVYVTSPVQK CCCCCHHHHHHHCCEEEEEEECCCHHHHHHCCCCEEEEEEECCCCCHHHHHEEECCHHHH VVGEFDLLKIDVNSVNTSNKYRSSSVISSRKEYLEYFNSHKEAHALLASKVYKYRKPKDL HHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHH ASFNMNKGPSGFTYLK HHCCCCCCCCCCCCCC >Mature Secondary Structure TDNKNHSLISDIKSQIKKFSEKALTLEVGNVISLGDGIVLVDGLDNVMLNEIVRFENGV CCCCCCHHHHHHHHHHHHHHHHEEEEEECCEEEECCCEEEECCCCHHHHHHHHHHCCCC EGMALNLEEDAVGVVLLGDYSNIKEGDRVYRTKRIVEVPVGDVMLGRVVDALGKAVDNKG CCEEEEECCCCEEEEEECCCCCCCCCHHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCCC NIVANKFSVIEKIAPGVMDRKSVHQPLETGILSIDAMFPIGKGQRELIIGDRQTGKTTIA CEEEHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCEEEEECCCCCCEEEE IDAIINQKGRNVNCVYVAIGQKNSTIANVVRELEAHGAMEYTTVVTANASELPALQYIAP EEEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHCC FTGVTIAEEMHQGKDVLIVYDDLSKHAIAYRTLSLLLRRPPGREAYPGDVFYLHSRLLER CCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH ACKLKDELGAGSITALPIIETQAGDISAYIPTNVISITDGQIFMMTSLFNAGQRPAIDAG HHHHHHHCCCCCEEEEEEEECCCCCEEEECCCCEEEECCCCEEEEEHHHCCCCCCCCCCC QSVSRVGSAAQIKSVKQTGASLKLELANYRELEAFSQFGSDLDDETKRILKLGKAVMAVI CHHHHHCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH KQAPNKPYNQTDEAIILFTVKEKLIPQVPVERIQDFKEYLLNYFKGTKLRADLEDKKAFD HHCCCCCCCCCCCEEEEEEECHHCCCCCCHHHHHHHHHHHHHHHCCCCEECCCHHHHHCC KENTPAFRCAIQKAINSFLNNSQDFKPCEEAEQTAFDKFFNENESIVVDGENDFNFINEE CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCE VSLKPTTETSEAVQIEEKVQDFVEPQEILETNKMEENHIFEEVEPEKIICEHHEFEIAEN EEECCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHCCCCHHEECCCCEEECCC QEKIEGQQVLEDTNHEYSIYETVEQSGEVDNDESKDDDLEVLVPVAEIEHDEAILDEREN HHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHCCCCHHHHCCCCC RNVFSDSAVSEVEKQTIMISISSNEAEQLFDNAKSVVFFKVTPKYPVEKVLVYVTSPVQK CCCCCHHHHHHHCCEEEEEEECCCHHHHHHCCCCEEEEEEECCCCCHHHHHEEECCHHHH VVGEFDLLKIDVNSVNTSNKYRSSSVISSRKEYLEYFNSHKEAHALLASKVYKYRKPKDL HHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHH ASFNMNKGPSGFTYLK HHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA