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The map label for this gene is ycfH [C]

Identifier: 170761942

GI number: 170761942

Start: 17581

End: 18378

Strand: Reverse

Name: ycfH [C]

Synonym: UPA3_0017

Alternate gene names: 170761942

Gene position: 18378-17581 (Counterclockwise)

Preceding gene: 170762183

Following gene: 170762360

Centisome position: 2.44

GC content: 26.82

Gene sequence:

>798_bases
ATGTTAGAAAAAATAAAAATTATTGATACTCATACTCATCCTAATATTGAACCATTAATTGAAGAATTTGATGACATTAT
CTTTAAATGTTATGAACAAGGTATTGGATTAAATATTGTTGGAGTAGATTTAAAAACTTCACAGACAGCCATTCAACAAG
CTAAAAAATTTAAATTTTTGACTTGTAGTGTTGCAATCCATCCTAATGATTTACATAATATAGAAAATGATTTTGTTGCA
TTAGAAAAATTGATAGCAGAAAATATTGATTACATAAGTTGTATTGGTGAGTGTGGTTTAGACTATTATCATGAACAAAA
TTATGATCATGATTTTCAAAAACATTGGTTTAAAAAACATATTGAATTGGCTAAAAAGTATCATAAACCATTAATGTTAC
ACATCCGTAATGCACACGATGACGCAATTGCCATCTTAAAAGAATTAGCTGTTCAAGATGTAATAATCCATTGTTTTACA
GATAAAAAAGAGTATGCACAACAATATATTGAAATGGGTTATTATATTTCATATCCTGGTGTAATTACTTTTAAACCAAC
AAAAAATAATCAATTACATGAACTGTATGAGGCGATTAAAATAACCCCACTTGATAAGATTCTAGTAGAAACAGACGCCC
CATATTTAACACCAGTTCCTAAACGAGGGCAAACTAACTATCCTTATTATGTATTATATACATCAGCATTTATTGCCAAC
TTATTAGGCATTACACATGAAAAAATGCAAAAAATCTTATTAGAAAATTCATTAAGAATTCTAAATTTTAAAAAATAA

Upstream 100 bases:

>100_bases
TTAGAATTTTGCAATTTACGTTTAAATGAACTCTTAGGCATAAGTAGCGAATATGATTTTTTAGATGATTTATTTAAAAA
TTTTTGTATAGGTAAATAAT

Downstream 100 bases:

>100_bases
AAAAGTGTTTTAATTAAAAAAACGCTTTTTTTTATACAAAAAACAAAAATTAAGTGTTTAACTTATATATACAAGTTTAT
TTTTTGTATAATGATACTAC

Product: TatD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MLEKIKIIDTHTHPNIEPLIEEFDDIIFKCYEQGIGLNIVGVDLKTSQTAIQQAKKFKFLTCSVAIHPNDLHNIENDFVA
LEKLIAENIDYISCIGECGLDYYHEQNYDHDFQKHWFKKHIELAKKYHKPLMLHIRNAHDDAIAILKELAVQDVIIHCFT
DKKEYAQQYIEMGYYISYPGVITFKPTKNNQLHELYEAIKITPLDKILVETDAPYLTPVPKRGQTNYPYYVLYTSAFIAN
LLGITHEKMQKILLENSLRILNFKK

Sequences:

>Translated_265_residues
MLEKIKIIDTHTHPNIEPLIEEFDDIIFKCYEQGIGLNIVGVDLKTSQTAIQQAKKFKFLTCSVAIHPNDLHNIENDFVA
LEKLIAENIDYISCIGECGLDYYHEQNYDHDFQKHWFKKHIELAKKYHKPLMLHIRNAHDDAIAILKELAVQDVIIHCFT
DKKEYAQQYIEMGYYISYPGVITFKPTKNNQLHELYEAIKITPLDKILVETDAPYLTPVPKRGQTNYPYYVLYTSAFIAN
LLGITHEKMQKILLENSLRILNFKK
>Mature_265_residues
MLEKIKIIDTHTHPNIEPLIEEFDDIIFKCYEQGIGLNIVGVDLKTSQTAIQQAKKFKFLTCSVAIHPNDLHNIENDFVA
LEKLIAENIDYISCIGECGLDYYHEQNYDHDFQKHWFKKHIELAKKYHKPLMLHIRNAHDDAIAILKELAVQDVIIHCFT
DKKEYAQQYIEMGYYISYPGVITFKPTKNNQLHELYEAIKITPLDKILVETDAPYLTPVPKRGQTNYPYYVLYTSAFIAN
LLGITHEKMQKILLENSLRILNFKK

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family

Homologues:

Organism=Homo sapiens, GI14042943, Length=203, Percent_Identity=29.5566502463054, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI226061853, Length=272, Percent_Identity=25, Blast_Score=88, Evalue=9e-18,
Organism=Homo sapiens, GI110349730, Length=268, Percent_Identity=24.6268656716418, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI225903439, Length=184, Percent_Identity=30.4347826086957, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI110349734, Length=268, Percent_Identity=24.2537313432836, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI226061614, Length=174, Percent_Identity=27.0114942528736, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI226061595, Length=230, Percent_Identity=25.6521739130435, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI225903424, Length=176, Percent_Identity=30.6818181818182, Blast_Score=70, Evalue=1e-12,
Organism=Escherichia coli, GI1787342, Length=264, Percent_Identity=31.4393939393939, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI48994985, Length=229, Percent_Identity=28.82096069869, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI87082439, Length=264, Percent_Identity=25, Blast_Score=91, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI17559024, Length=288, Percent_Identity=26.7361111111111, Blast_Score=107, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI71980746, Length=268, Percent_Identity=28.3582089552239, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17565396, Length=154, Percent_Identity=36.3636363636364, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17543026, Length=198, Percent_Identity=27.7777777777778, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24648690, Length=221, Percent_Identity=30.7692307692308, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI221330018, Length=206, Percent_Identity=28.6407766990291, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24586117, Length=206, Percent_Identity=28.6407766990291, Blast_Score=84, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y017_UREPA (Q9PRC8)

Other databases:

- EMBL:   AF222894
- RefSeq:   NP_077847.1
- ProteinModelPortal:   Q9PRC8
- SMR:   Q9PRC8
- GeneID:   875825
- GenomeReviews:   AF222894_GR
- KEGG:   uur:UU017
- HOGENOM:   HBG629833
- OMA:   NAEDNAI
- ProtClustDB:   CLSK2298740
- BioCyc:   UURE95667:UU017-MONOMER
- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991
- PANTHER:   PTHR10060
- PIRSF:   PIRSF005902
- TIGRFAMs:   TIGR00010

Pfam domain/function: PF01026 TatD_DNase

EC number: 3.1.21.-

Molecular weight: Translated: 30929; Mature: 30929

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: PS01137 TATD_1; PS01090 TATD_2; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEKIKIIDTHTHPNIEPLIEEFDDIIFKCYEQGIGLNIVGVDLKTSQTAIQQAKKFKFL
CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHEEEE
TCSVAIHPNDLHNIENDFVALEKLIAENIDYISCIGECGLDYYHEQNYDHDFQKHWFKKH
EEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHH
IELAKKYHKPLMLHIRNAHDDAIAILKELAVQDVIIHCFTDKKEYAQQYIEMGYYISYPG
HHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEEECCC
VITFKPTKNNQLHELYEAIKITPLDKILVETDAPYLTPVPKRGQTNYPYYVLYTSAFIAN
EEEECCCCCCHHHHHHHHHHCCCHHHHHEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHH
LLGITHEKMQKILLENSLRILNFKK
HHCCCHHHHHHHHHHCCCCEEEECC
>Mature Secondary Structure
MLEKIKIIDTHTHPNIEPLIEEFDDIIFKCYEQGIGLNIVGVDLKTSQTAIQQAKKFKFL
CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHEEEE
TCSVAIHPNDLHNIENDFVALEKLIAENIDYISCIGECGLDYYHEQNYDHDFQKHWFKKH
EEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHH
IELAKKYHKPLMLHIRNAHDDAIAILKELAVQDVIIHCFTDKKEYAQQYIEMGYYISYPG
HHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEEECCC
VITFKPTKNNQLHELYEAIKITPLDKILVETDAPYLTPVPKRGQTNYPYYVLYTSAFIAN
EEEECCCCCCHHHHHHHHHHCCCHHHHHEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHH
LLGITHEKMQKILLENSLRILNFKK
HHCCCHHHHHHHHHHCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11048724