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The map label for this gene is yjfH [C]

Identifier: 170761850

GI number: 170761850

Start: 163804

End: 164523

Strand: Direct

Name: yjfH [C]

Synonym: UPA3_0130

Alternate gene names: 170761850

Gene position: 163804-164523 (Clockwise)

Preceding gene: 170761946

Following gene: 170761874

Centisome position: 21.79

GC content: 24.58

Gene sequence:

>720_bases
ATGAATTATAATTTTGGCAAAAAAGCATTATTAGATGCAATTGGTAACAAACAATCAATTTCAAAAGTGTATTTATTATC
AAAAAATTATGAGTTAATTAATTTAATTAATAAAAATAAAATTACTTATGAAATTGTTAATGAAGCATGATTTAAACAAT
TTGATCATTCTTTAAACCATCAAAATATTGCATTTAAACTAGTCAAAAAAAACTTTCAAAAAACGAGTTTAGAATCTTTT
TTAAAATTAATAAAAGATAAAAAAAATGCTTTAGTTTTAATACTTGATGAAATTGAAGATCCTCGCAATTTTGGAGCAAT
TATTAGAACTGCTAATGGTTTTGGTGTGGATGCTATTATTTATAAAAAGCATCACCAAGCAAGCATTAATGATTTAGTAA
TTAAAACAAGTATGGGTGCAATTAATTATATTTATATGATCGAAGTCAATAATTTATCAAATACAATAAAAAACCTTCAA
GATGAAGGTTTTTGAGTTTATGCGACAAGTTTATTAAAATCACAACCATATGAAAAAGTTGATTATGCTAATAAAACTGT
TTTTATTGTAGGCAATGAAAATAAAGGTGTGAGTCCATTAATTTTAAAAAATGCAGATCAAAGCATACGAATTGATATGT
TTGGTGATGTACAATCTTTAAATGTTGGTGTAGCAACAGGAATTATCTTAGCGCATTATCGCACTAAAATAAAACCCTAG

Upstream 100 bases:

>100_bases
TTAGCATTATTAAATACTTGAAAAAATTACGTTGATAAAAAAGATTATGTTAAAGCTGATGAATTAAGAAAACAATTAAT
TAATATAGGAATTTTATAAA

Downstream 100 bases:

>100_bases
TTATTTTTTTATGATGGTTTATTTTTGTCTGTACATTTTCCAGTTGCAAAACACTCTGCAATACCAAATCAGACTTTATT
AACTTCGTTGTGTTTTGACT

Product: RNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MNYNFGKKALLDAIGNKQSISKVYLLSKNYELINLINKNKITYEIVNEAWFKQFDHSLNHQNIAFKLVKKNFQKTSLESF
LKLIKDKKNALVLILDEIEDPRNFGAIIRTANGFGVDAIIYKKHHQASINDLVIKTSMGAINYIYMIEVNNLSNTIKNLQ
DEGFWVYATSLLKSQPYEKVDYANKTVFIVGNENKGVSPLILKNADQSIRIDMFGDVQSLNVGVATGIILAHYRTKIKP

Sequences:

>Translated_239_residues
MNYNFGKKALLDAIGNKQSISKVYLLSKNYELINLINKNKITYEIVNEA*FKQFDHSLNHQNIAFKLVKKNFQKTSLESF
LKLIKDKKNALVLILDEIEDPRNFGAIIRTANGFGVDAIIYKKHHQASINDLVIKTSMGAINYIYMIEVNNLSNTIKNLQ
DEGF*VYATSLLKSQPYEKVDYANKTVFIVGNENKGVSPLILKNADQSIRIDMFGDVQSLNVGVATGIILAHYRTKIKP
>Mature_239_residues
MNYNFGKKALLDAIGNKQSISKVYLLSKNYELINLINKNKITYEIVNEA*FKQFDHSLNHQNIAFKLVKKNFQKTSLESF
LKLIKDKKNALVLILDEIEDPRNFGAIIRTANGFGVDAIIYKKHHQASINDLVIKTSMGAINYIYMIEVNNLSNTIKNLQ
DEGF*VYATSLLKSQPYEKVDYANKTVFIVGNENKGVSPLILKNADQSIRIDMFGDVQSLNVGVATGIILAHYRTKIKP

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=226, Percent_Identity=25.2212389380531, Blast_Score=79, Evalue=3e-15,
Organism=Escherichia coli, GI1790623, Length=200, Percent_Identity=30, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788935, Length=205, Percent_Identity=24.8780487804878, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790083, Length=160, Percent_Identity=26.875, Blast_Score=71, Evalue=8e-14,
Organism=Saccharomyces cerevisiae, GI6324775, Length=169, Percent_Identity=31.9526627218935, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 26783; Mature: 26783

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYNFGKKALLDAIGNKQSISKVYLLSKNYELINLINKNKITYEIVNEAFKQFDHSLNHQ
CCCCCHHHHHHHHHCCCCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC
NIAFKLVKKNFQKTSLESFLKLIKDKKNALVLILDEIEDPRNFGAIIRTANGFGVDAIIY
HHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEE
KKHHQASINDLVIKTSMGAINYIYMIEVNNLSNTIKNLQDEGFVYATSLLKSQPYEKVDY
ECCCCCCCHHEEEEECCCCEEEEEEEEECCHHHHHHHHCCCCEEEEEHHHHCCCCCHHCC
ANKTVFIVGNENKGVSPLILKNADQSIRIDMFGDVQSLNVGVATGIILAHYRTKIKP
CCCEEEEEECCCCCCCEEEEECCCCEEEEEEECCHHHCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNYNFGKKALLDAIGNKQSISKVYLLSKNYELINLINKNKITYEIVNEAFKQFDHSLNHQ
CCCCCHHHHHHHHHCCCCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC
NIAFKLVKKNFQKTSLESFLKLIKDKKNALVLILDEIEDPRNFGAIIRTANGFGVDAIIY
HHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEE
KKHHQASINDLVIKTSMGAINYIYMIEVNNLSNTIKNLQDEGFVYATSLLKSQPYEKVDY
ECCCCCCCHHEEEEECCCCEEEEEEEEECCHHHHHHHHCCCCEEEEEHHHHCCCCCHHCC
ANKTVFIVGNENKGVSPLILKNADQSIRIDMFGDVQSLNVGVATGIILAHYRTKIKP
CCCEEEEEECCCCCCCEEEEECCCCEEEEEEECCHHHCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8948633 [H]