| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is yhxC [H]
Identifier: 170757834
GI number: 170757834
Start: 1849380
End: 1850264
Strand: Reverse
Name: yhxC [H]
Synonym: CLD_2894
Alternate gene names: 170757834
Gene position: 1850264-1849380 (Counterclockwise)
Preceding gene: 170754764
Following gene: 170756884
Centisome position: 46.74
GC content: 34.92
Gene sequence:
>885_bases ATGAATGAAGATTTGAATTTTATAAACAGTTTCCCTAAGTCTGTACCTGGTCAAGAGCAATCAAAGCAACCCGGTATAGA AGCTATTATGAATCCTAAACCCATTTTTGACAATCCTAACTACAAAGCTTCCGCAAAGCTTATGGATAGAGTTGCCTTAA TTACCGGTGGCGATAGTGGCATTGGTAGAGCTGTAGCTGTAACCTTTGCTAAAGAAGGTGCAGACATTTCTATTGTATAC TTTGATGAACACGAAGATGCAAAGGAAACTCAGACTATAATAGAAGGTTTAGGTAGAAAGTGTTTATTAATTCCTGGAGA TATTACAGATGATAACTTTTGCAATAATGCCATAAATCAAACTATAAATACTTTTAATAAACTAGATATTTTAGTAAACA ATGCAGCTGTTCAATACGTTCAAAATAGCATAGAGGATATAACAAAGGAACAATTAGAAAAAACTTTTAAAACTAATATA TTCAGTATATTTTATTTAGTAAAGGCTGCTTTACCCTATTTAAACAGAGGTGCTTCCATTATAAATACAGCATCTATAAC AGCCTATAAAGGTCAGAAGCTGTTAATTGATTATTCTTCTAGCAAGGGTGCTATTGTAAGCTTTACTCGCTCTTTGGCAT TATCTTTATGGAGTAAAGATATAAGAGTTAATGCCGTAGCCCCTGGGCCTATTTGGACTCCTCTTATACCTTCTTCTTTT GATACTAATCATGTGGGAACATTTGGTTCTACCACAACTATGGGCAGACCAGGTCAGCCAGTAGAATTAGCTCCAGCCTA TGTATACTTAGCCTCTAATGAATGTGCCTCCTTTGTATCTGGTGAAGTAATACATATAAATGGAGGAGAAATTATAAATG GGTAG
Upstream 100 bases:
>100_bases AAATACTAATAATAAATAATACAACTATATATTTATTAAATAAACTTTACTAAGCAAACTATATAAAATGCAACAGAATT TAGAGAAAGGAAGATATCAC
Downstream 100 bases:
>100_bases TCACTATATAGAATGATTCTATTTATAATACTTTAACGATTTTTTTAGCTAAATATGAAATGGTAAATCATTTTAATTAA ACTTTATATAATTTTAAATA
Product: short chain dehydrogenase/reductase family oxidoreductase
Products: NA
Alternate protein names: ORFX [H]
Number of amino acids: Translated: 294; Mature: 294
Protein sequence:
>294_residues MNEDLNFINSFPKSVPGQEQSKQPGIEAIMNPKPIFDNPNYKASAKLMDRVALITGGDSGIGRAVAVTFAKEGADISIVY FDEHEDAKETQTIIEGLGRKCLLIPGDITDDNFCNNAINQTINTFNKLDILVNNAAVQYVQNSIEDITKEQLEKTFKTNI FSIFYLVKAALPYLNRGASIINTASITAYKGQKLLIDYSSSKGAIVSFTRSLALSLWSKDIRVNAVAPGPIWTPLIPSSF DTNHVGTFGSTTTMGRPGQPVELAPAYVYLASNECASFVSGEVIHINGGEIING
Sequences:
>Translated_294_residues MNEDLNFINSFPKSVPGQEQSKQPGIEAIMNPKPIFDNPNYKASAKLMDRVALITGGDSGIGRAVAVTFAKEGADISIVY FDEHEDAKETQTIIEGLGRKCLLIPGDITDDNFCNNAINQTINTFNKLDILVNNAAVQYVQNSIEDITKEQLEKTFKTNI FSIFYLVKAALPYLNRGASIINTASITAYKGQKLLIDYSSSKGAIVSFTRSLALSLWSKDIRVNAVAPGPIWTPLIPSSF DTNHVGTFGSTTTMGRPGQPVELAPAYVYLASNECASFVSGEVIHINGGEIING >Mature_294_residues MNEDLNFINSFPKSVPGQEQSKQPGIEAIMNPKPIFDNPNYKASAKLMDRVALITGGDSGIGRAVAVTFAKEGADISIVY FDEHEDAKETQTIIEGLGRKCLLIPGDITDDNFCNNAINQTINTFNKLDILVNNAAVQYVQNSIEDITKEQLEKTFKTNI FSIFYLVKAALPYLNRGASIINTASITAYKGQKLLIDYSSSKGAIVSFTRSLALSLWSKDIRVNAVAPGPIWTPLIPSSF DTNHVGTFGSTTTMGRPGQPVELAPAYVYLASNECASFVSGEVIHINGGEIING
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI59889578, Length=229, Percent_Identity=30.5676855895196, Blast_Score=108, Evalue=6e-24, Organism=Homo sapiens, GI40254992, Length=248, Percent_Identity=30.241935483871, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI32483357, Length=254, Percent_Identity=29.5275590551181, Blast_Score=102, Evalue=6e-22, Organism=Homo sapiens, GI10190704, Length=252, Percent_Identity=29.3650793650794, Blast_Score=99, Evalue=7e-21, Organism=Homo sapiens, GI4758504, Length=253, Percent_Identity=30.8300395256917, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI19923817, Length=265, Percent_Identity=27.1698113207547, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=30.6122448979592, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI31542939, Length=207, Percent_Identity=30.4347826086957, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI15277342, Length=258, Percent_Identity=27.906976744186, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI33667109, Length=188, Percent_Identity=31.9148936170213, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI83715985, Length=254, Percent_Identity=29.5275590551181, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI7705925, Length=249, Percent_Identity=27.3092369477912, Blast_Score=78, Evalue=8e-15, Organism=Homo sapiens, GI66933014, Length=252, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI20149619, Length=238, Percent_Identity=29.4117647058824, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI224922801, Length=170, Percent_Identity=31.1764705882353, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI142976729, Length=218, Percent_Identity=29.3577981651376, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI210032110, Length=169, Percent_Identity=31.9526627218935, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI7657478, Length=190, Percent_Identity=30.5263157894737, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI126723191, Length=185, Percent_Identity=27.5675675675676, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI126723750, Length=254, Percent_Identity=24.4094488188976, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI7706318, Length=211, Percent_Identity=27.4881516587678, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI40254986, Length=147, Percent_Identity=32.6530612244898, Blast_Score=68, Evalue=1e-11, Organism=Escherichia coli, GI1789378, Length=286, Percent_Identity=45.8041958041958, Blast_Score=255, Evalue=3e-69, Organism=Escherichia coli, GI2367175, Length=253, Percent_Identity=33.201581027668, Blast_Score=137, Evalue=7e-34, Organism=Escherichia coli, GI1787335, Length=242, Percent_Identity=31.8181818181818, Blast_Score=115, Evalue=2e-27, Organism=Escherichia coli, GI1787905, Length=249, Percent_Identity=32.5301204819277, Blast_Score=100, Evalue=8e-23, Organism=Escherichia coli, GI87082100, Length=260, Percent_Identity=30.7692307692308, Blast_Score=100, Evalue=8e-23, Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=29.8387096774194, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=29.2682926829268, Blast_Score=98, Evalue=8e-22, Organism=Escherichia coli, GI87082160, Length=251, Percent_Identity=29.8804780876494, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=26.4227642276423, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI2367365, Length=243, Percent_Identity=27.5720164609054, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1786812, Length=251, Percent_Identity=25.0996015936255, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1787526, Length=241, Percent_Identity=24.4813278008299, Blast_Score=65, Evalue=5e-12, Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=33.0769230769231, Blast_Score=119, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17551412, Length=272, Percent_Identity=33.4558823529412, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=34.0080971659919, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17559104, Length=262, Percent_Identity=30.9160305343511, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17560220, Length=268, Percent_Identity=32.4626865671642, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17560150, Length=261, Percent_Identity=29.8850574712644, Blast_Score=107, Evalue=7e-24, Organism=Caenorhabditis elegans, GI17538480, Length=263, Percent_Identity=31.5589353612167, Blast_Score=106, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17560332, Length=262, Percent_Identity=29.7709923664122, Blast_Score=106, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562910, Length=265, Percent_Identity=32.8301886792453, Blast_Score=106, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=31.6793893129771, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17562906, Length=259, Percent_Identity=29.7297297297297, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI25147288, Length=250, Percent_Identity=30.4, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=31.6, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17531453, Length=255, Percent_Identity=31.7647058823529, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17544670, Length=258, Percent_Identity=29.8449612403101, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17538486, Length=262, Percent_Identity=30.5343511450382, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17563726, Length=257, Percent_Identity=29.5719844357977, Blast_Score=100, Evalue=7e-22, Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=29.7709923664122, Blast_Score=100, Evalue=2e-21, Organism=Caenorhabditis elegans, GI72000259, Length=258, Percent_Identity=28.2945736434109, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=29.1666666666667, Blast_Score=97, Evalue=7e-21, Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=29.6, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17536025, Length=282, Percent_Identity=29.7872340425532, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17538182, Length=255, Percent_Identity=29.4117647058824, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=29.6, Blast_Score=95, Evalue=5e-20, Organism=Caenorhabditis elegans, GI17565030, Length=260, Percent_Identity=28.0769230769231, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17536651, Length=279, Percent_Identity=29.7491039426523, Blast_Score=90, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17555706, Length=253, Percent_Identity=29.6442687747036, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI193203117, Length=198, Percent_Identity=31.3131313131313, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI193203115, Length=185, Percent_Identity=32.4324324324324, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17567345, Length=192, Percent_Identity=29.1666666666667, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17564282, Length=187, Percent_Identity=30.4812834224599, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI115534694, Length=253, Percent_Identity=26.4822134387352, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17558006, Length=217, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17508895, Length=198, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17561272, Length=244, Percent_Identity=26.6393442622951, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=198, Percent_Identity=30.8080808080808, Blast_Score=69, Evalue=7e-13, Organism=Saccharomyces cerevisiae, GI6322226, Length=189, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI21357041, Length=258, Percent_Identity=31.7829457364341, Blast_Score=118, Evalue=5e-27, Organism=Drosophila melanogaster, GI28571526, Length=248, Percent_Identity=32.6612903225806, Blast_Score=116, Evalue=2e-26, Organism=Drosophila melanogaster, GI24644339, Length=247, Percent_Identity=33.1983805668016, Blast_Score=114, Evalue=1e-25, Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=30.6772908366534, Blast_Score=107, Evalue=1e-23, Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=31.2, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI17737361, Length=260, Percent_Identity=29.2307692307692, Blast_Score=92, Evalue=3e-19, Organism=Drosophila melanogaster, GI24643142, Length=244, Percent_Identity=30.327868852459, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI24644337, Length=256, Percent_Identity=34.375, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI24639444, Length=251, Percent_Identity=26.6932270916335, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24580925, Length=213, Percent_Identity=28.169014084507, Blast_Score=77, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 31875; Mature: 31875
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNEDLNFINSFPKSVPGQEQSKQPGIEAIMNPKPIFDNPNYKASAKLMDRVALITGGDSG CCCCHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHEEEEEECCCCC IGRAVAVTFAKEGADISIVYFDEHEDAKETQTIIEGLGRKCLLIPGDITDDNFCNNAINQ CCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH TINTFNKLDILVNNAAVQYVQNSIEDITKEQLEKTFKTNIFSIFYLVKAALPYLNRGASI HHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE INTASITAYKGQKLLIDYSSSKGAIVSFTRSLALSLWSKDIRVNAVAPGPIWTPLIPSSF EEECEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC DTNHVGTFGSTTTMGRPGQPVELAPAYVYLASNECASFVSGEVIHINGGEIING CCCCCCCCCCCCCCCCCCCCCEECCEEEEEECCHHHHHHCCCEEEECCCEECCC >Mature Secondary Structure MNEDLNFINSFPKSVPGQEQSKQPGIEAIMNPKPIFDNPNYKASAKLMDRVALITGGDSG CCCCHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHEEEEEECCCCC IGRAVAVTFAKEGADISIVYFDEHEDAKETQTIIEGLGRKCLLIPGDITDDNFCNNAINQ CCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH TINTFNKLDILVNNAAVQYVQNSIEDITKEQLEKTFKTNIFSIFYLVKAALPYLNRGASI HHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE INTASITAYKGQKLLIDYSSSKGAIVSFTRSLALSLWSKDIRVNAVAPGPIWTPLIPSSF EEECEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC DTNHVGTFGSTTTMGRPGQPVELAPAYVYLASNECASFVSGEVIHINGGEIING CCCCCCCCCCCCCCCCCCCCCEECCEEEEEECCHHHHHHCCCEEEECCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377; 8196543 [H]