| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is ilvD
Identifier: 170757637
GI number: 170757637
Start: 369065
End: 370780
Strand: Direct
Name: ilvD
Synonym: CLD_0459
Alternate gene names: 170757637
Gene position: 369065-370780 (Clockwise)
Preceding gene: 170756599
Following gene: 170754964
Centisome position: 9.32
GC content: 35.37
Gene sequence:
>1716_bases ATGATTAGTCAAGATATTAGAAAGATTGCTCCAGAAATGGATCCACTTCGTAGGGGTATGGGATGGTCAGTTGAAGATTT ATCTAAGCCTCAAATTATAGTTGAAAGTACCTTTGGAGATAGTCACCCAGGAAGTGCTCATTTAATGAAATTTGCAAATA ATGCGGTACAGGGTGTAGCAGAAAGAGGGGGAAAGGCTGCAAGATATTTTGCAACAGATATATGTGATGGTATGGCTCAA GGTCACGATGGAATCAATTATTCATTAGCCTCTAGGGATACTATAACATCACTTATAGAAATTCATGCGAATGCCACTCC TTTTGATGGAGGGGTATTTATATCAAGCTGTGATAAGGCTGTCCCATCTCACTTAATGGCTATAGGAAGACTTAATATAC CATCAATTGTTGTTACAGGTGGCGTTATGGAAGCGGGACCTAACCTTTTAACTTTAGAGCAAATTGGTGCTTATAGTGCT ATGTATCAACGAAAAGAAATTACAGAGGAAGAATTAACTTACTATAAACATAATGCATGTCCATCTTGTGGAGCTTGTTC TTTTATGGGAACAGCTTCAACAATGCAGGTTATGGCAGAAGCTTTAGGATTAATGTTACCTGGTAGTGCTTTAATGCCCG CAACTTGTAAAGACTTAGAAGATGTTGCAGTAGAGGCTGGGAAACAAGTTGTTGAACTAGCAAAGATGAATCTTAAGCCA AAGGATATAGTTACAGAAAAATCCTTTGAAAATGCAATTATAATTCATGCAGCAATTTCGGGATCTACTAATTCATTATT ACACATTCCAGCAATAGCTCATGAATTTGGTATAAAAATTGATGAAGAAAGTTTTGATAGAATACATCGATACGCTCCAT ATCTTTTAAATATACGTCCAGCAGGAAAATGGCCGGCAGAATATTTTTATTATGCAGGCGGAGTACCAGCAATAATGGAA GAAGTAAAGCATTTATTACATTTAGATGTAATGACTGTTACAGGTAAAACTTTAGGTGAGAATTTAGAGGACTTAAAGAA GAATGGATATTATAAGAATTGTGATAAATACCTTAAAAAGGTTGGACTTACAAGAAGAGATGTTATAAGACCAATAAGTG AACCTATAGGTAAAAATGGAGCTATCGCAATTTTAAAAGGAAATATAGCGCCAGAAGGAGCAGTAGTTAAACATTCAGCC GTACCAAAAGAAATGCATAAAGGAATTTTAAAGGCAAGACTTTTTGATAGTGAAGAAGAAGCAATATCAGCTATTATATC TAAAAAAATAAATCCAGGAGATGCTGTATTTATAAGATATGAAGGCCCAAAAGGAAGTGGAATGCCTGAAATGTTTTATA CAACAGAAGCAATATCCTCAGATAAAGAATTATCTGCAAGTATTGCGCTTATTACAGATGGAAGATTCTCAGGGGCATCC AAAGGGCCTGCAATAGGACATGTTTCTCCCGAAGCAGCAGTGGGAGGGCCAATTGCCTTAGTTGAAGAGAATGATTTAAT TGAAATAGATATAGAGAAAAGAATACTACAATTAGTTGGTGTTAATGGACAAAAATTAAGTGAAGAAGCCATAGATAAGG TTTTAGTAGAACGTAAAGCTAAGTGGGAAAAAAGAGAAAATAAATATAAATCAGGAATATTAAAGATATTTTCAGAAAGA GCAGTTTCACCAATGAAGGGTGGATATATGGAATAA
Upstream 100 bases:
>100_bases TATTTAGTAAAAGCTCGGAAAGTGGATATACCATGTTCCGAGCTATGTTTTAAACAAGATGCATATAAAGGGAATATTTA TGTTAAATAAGGAGGTTAAT
Downstream 100 bases:
>100_bases TAATATTTCTGTAAGAGTTAGTACAATAATAGATTTATGGAGGTTTTTATTGTGATTAAGATGAAGGTTTTAAATGCTCT AAAAAAATGTAAGATAGTAG
Product: dihydroxy-acid dehydratase
Products: NA
Alternate protein names: DAD [H]
Number of amino acids: Translated: 571; Mature: 571
Protein sequence:
>571_residues MISQDIRKIAPEMDPLRRGMGWSVEDLSKPQIIVESTFGDSHPGSAHLMKFANNAVQGVAERGGKAARYFATDICDGMAQ GHDGINYSLASRDTITSLIEIHANATPFDGGVFISSCDKAVPSHLMAIGRLNIPSIVVTGGVMEAGPNLLTLEQIGAYSA MYQRKEITEEELTYYKHNACPSCGACSFMGTASTMQVMAEALGLMLPGSALMPATCKDLEDVAVEAGKQVVELAKMNLKP KDIVTEKSFENAIIIHAAISGSTNSLLHIPAIAHEFGIKIDEESFDRIHRYAPYLLNIRPAGKWPAEYFYYAGGVPAIME EVKHLLHLDVMTVTGKTLGENLEDLKKNGYYKNCDKYLKKVGLTRRDVIRPISEPIGKNGAIAILKGNIAPEGAVVKHSA VPKEMHKGILKARLFDSEEEAISAIISKKINPGDAVFIRYEGPKGSGMPEMFYTTEAISSDKELSASIALITDGRFSGAS KGPAIGHVSPEAAVGGPIALVEENDLIEIDIEKRILQLVGVNGQKLSEEAIDKVLVERKAKWEKRENKYKSGILKIFSER AVSPMKGGYME
Sequences:
>Translated_571_residues MISQDIRKIAPEMDPLRRGMGWSVEDLSKPQIIVESTFGDSHPGSAHLMKFANNAVQGVAERGGKAARYFATDICDGMAQ GHDGINYSLASRDTITSLIEIHANATPFDGGVFISSCDKAVPSHLMAIGRLNIPSIVVTGGVMEAGPNLLTLEQIGAYSA MYQRKEITEEELTYYKHNACPSCGACSFMGTASTMQVMAEALGLMLPGSALMPATCKDLEDVAVEAGKQVVELAKMNLKP KDIVTEKSFENAIIIHAAISGSTNSLLHIPAIAHEFGIKIDEESFDRIHRYAPYLLNIRPAGKWPAEYFYYAGGVPAIME EVKHLLHLDVMTVTGKTLGENLEDLKKNGYYKNCDKYLKKVGLTRRDVIRPISEPIGKNGAIAILKGNIAPEGAVVKHSA VPKEMHKGILKARLFDSEEEAISAIISKKINPGDAVFIRYEGPKGSGMPEMFYTTEAISSDKELSASIALITDGRFSGAS KGPAIGHVSPEAAVGGPIALVEENDLIEIDIEKRILQLVGVNGQKLSEEAIDKVLVERKAKWEKRENKYKSGILKIFSER AVSPMKGGYME >Mature_571_residues MISQDIRKIAPEMDPLRRGMGWSVEDLSKPQIIVESTFGDSHPGSAHLMKFANNAVQGVAERGGKAARYFATDICDGMAQ GHDGINYSLASRDTITSLIEIHANATPFDGGVFISSCDKAVPSHLMAIGRLNIPSIVVTGGVMEAGPNLLTLEQIGAYSA MYQRKEITEEELTYYKHNACPSCGACSFMGTASTMQVMAEALGLMLPGSALMPATCKDLEDVAVEAGKQVVELAKMNLKP KDIVTEKSFENAIIIHAAISGSTNSLLHIPAIAHEFGIKIDEESFDRIHRYAPYLLNIRPAGKWPAEYFYYAGGVPAIME EVKHLLHLDVMTVTGKTLGENLEDLKKNGYYKNCDKYLKKVGLTRRDVIRPISEPIGKNGAIAILKGNIAPEGAVVKHSA VPKEMHKGILKARLFDSEEEAISAIISKKINPGDAVFIRYEGPKGSGMPEMFYTTEAISSDKELSASIALITDGRFSGAS KGPAIGHVSPEAAVGGPIALVEENDLIEIDIEKRILQLVGVNGQKLSEEAIDKVLVERKAKWEKRENKYKSGILKIFSER AVSPMKGGYME
Specific function: Valine and isoleucine biosynthesis; fourth step. [C]
COG id: COG0129
COG function: function code EG; Dihydroxyacid dehydratase/phosphogluconate dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ilvD/edd family [H]
Homologues:
Organism=Escherichia coli, GI48994964, Length=588, Percent_Identity=36.5646258503401, Blast_Score=320, Evalue=2e-88, Organism=Escherichia coli, GI1786464, Length=563, Percent_Identity=35.1687388987567, Blast_Score=290, Evalue=2e-79, Organism=Escherichia coli, GI2367371, Length=535, Percent_Identity=35.3271028037383, Blast_Score=263, Evalue=2e-71, Organism=Escherichia coli, GI1788157, Length=460, Percent_Identity=31.7391304347826, Blast_Score=202, Evalue=4e-53, Organism=Saccharomyces cerevisiae, GI6322476, Length=555, Percent_Identity=35.3153153153153, Blast_Score=307, Evalue=2e-84,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015928 - InterPro: IPR004404 - InterPro: IPR000581 - InterPro: IPR020558 [H]
Pfam domain/function: PF00920 ILVD_EDD [H]
EC number: =4.2.1.9 [H]
Molecular weight: Translated: 61995; Mature: 61995
Theoretical pI: Translated: 6.46; Mature: 6.46
Prosite motif: PS00589 PTS_HPR_SER ; PS00887 ILVD_EDD_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISQDIRKIAPEMDPLRRGMGWSVEDLSKPQIIVESTFGDSHPGSAHLMKFANNAVQGVA CCCHHHHHHCCCCCHHHHCCCCCHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH ERGGKAARYFATDICDGMAQGHDGINYSLASRDTITSLIEIHANATPFDGGVFISSCDKA HCCCCCHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHCCCCCCCCCEEHHHHHHH VPSHLMAIGRLNIPSIVVTGGVMEAGPNLLTLEQIGAYSAMYQRKEITEEELTYYKHNAC HHHHHHHHCCCCCCEEEEECCHHHCCCCEEEHHHHHHHHHHHHHHHCCHHHHHHHHCCCC PSCGACSFMGTASTMQVMAEALGLMLPGSALMPATCKDLEDVAVEAGKQVVELAKMNLKP CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC KDIVTEKSFENAIIIHAAISGSTNSLLHIPAIAHEFGIKIDEESFDRIHRYAPYLLNIRP HHHHCCCCCCCEEEEEEEECCCCCCEEECCHHHHHHCCEECHHHHHHHHHCCCEEEEEEC AGKWPAEYFYYAGGVPAIMEEVKHLLHLDVMTVTGKTLGENLEDLKKNGYYKNCDKYLKK CCCCCHHHEEECCCHHHHHHHHHHHHHHHHHEECCHHHHCCHHHHHHCCCCCHHHHHHHH VGLTRRDVIRPISEPIGKNGAIAILKGNIAPEGAVVKHSAVPKEMHKGILKARLFDSEEE HCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEECCCCCHHHHHHHHHHHHCCCHHH AISAIISKKINPGDAVFIRYEGPKGSGMPEMFYTTEAISSDKELSASIALITDGRFSGAS HHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHEEHHHHCCCCCCCEEEEEEECCCCCCCC KGPAIGHVSPEAAVGGPIALVEENDLIEIDIEKRILQLVGVNGQKLSEEAIDKVLVERKA CCCCCCCCCCCCCCCCCEEEEECCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH KWEKRENKYKSGILKIFSERAVSPMKGGYME HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MISQDIRKIAPEMDPLRRGMGWSVEDLSKPQIIVESTFGDSHPGSAHLMKFANNAVQGVA CCCHHHHHHCCCCCHHHHCCCCCHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH ERGGKAARYFATDICDGMAQGHDGINYSLASRDTITSLIEIHANATPFDGGVFISSCDKA HCCCCCHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHCCCCCCCCCEEHHHHHHH VPSHLMAIGRLNIPSIVVTGGVMEAGPNLLTLEQIGAYSAMYQRKEITEEELTYYKHNAC HHHHHHHHCCCCCCEEEEECCHHHCCCCEEEHHHHHHHHHHHHHHHCCHHHHHHHHCCCC PSCGACSFMGTASTMQVMAEALGLMLPGSALMPATCKDLEDVAVEAGKQVVELAKMNLKP CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC KDIVTEKSFENAIIIHAAISGSTNSLLHIPAIAHEFGIKIDEESFDRIHRYAPYLLNIRP HHHHCCCCCCCEEEEEEEECCCCCCEEECCHHHHHHCCEECHHHHHHHHHCCCEEEEEEC AGKWPAEYFYYAGGVPAIMEEVKHLLHLDVMTVTGKTLGENLEDLKKNGYYKNCDKYLKK CCCCCHHHEEECCCHHHHHHHHHHHHHHHHHEECCHHHHCCHHHHHHCCCCCHHHHHHHH VGLTRRDVIRPISEPIGKNGAIAILKGNIAPEGAVVKHSAVPKEMHKGILKARLFDSEEE HCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEECCCCCHHHHHHHHHHHHCCCHHH AISAIISKKINPGDAVFIRYEGPKGSGMPEMFYTTEAISSDKELSASIALITDGRFSGAS HHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHEEHHHHCCCCCCCEEEEEEECCCCCCCC KGPAIGHVSPEAAVGGPIALVEENDLIEIDIEKRILQLVGVNGQKLSEEAIDKVLVERKA CCCCCCCCCCCCCCCCCEEEEECCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH KWEKRENKYKSGILKIFSERAVSPMKGGYME HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA