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The map label for this gene is ypdB [H]

Identifier: 170757417

GI number: 170757417

Start: 1172995

End: 1173702

Strand: Reverse

Name: ypdB [H]

Synonym: CLD_3504

Alternate gene names: 170757417

Gene position: 1173702-1172995 (Counterclockwise)

Preceding gene: 170754311

Following gene: 170756382

Centisome position: 29.65

GC content: 23.31

Gene sequence:

>708_bases
ATGCTAAAGTTAGCTATTTGTGATGATGAAAAAGCCCAAAGAGAAGAAATAGTAGGTATTATTGTTGAAGCTTTACGATT
AAAAAACAAACAGTATAAAATATCTGAATTTGATAATGGAGAAGATTTAATATCCTCAACAGATGACTTTGATATATATT
TTTTAGATATAAAAATGGATAAATTAACGGGCCTAGAAGTTGCAAAAAAAATTAGACTTATAAATGGAGAAGCAGTTATT
GTATTTATAACAGGACTTAAAGATTATGTTTTTGACGCATTTGATGTAAAAGCTTTTCACTATATTTTAAAACCCATTAA
TGAAAGTAAACTTAAAGATGTTTTATATTCAGCTTTACTGCAGTTTGATAAAAAAGACAAGTTTATTATTGCTAAAACAA
TTAGCCAAGCTACTAAAATTTTTCTTAAAGATATAATGTACATAGAATCACAACATAGGAAACTAAAAATCCATACTAAA
AATAATATTATTGAATATTATCATAAAATATCTGATATTGAAAAAGAACTTTATGGATGTAATTTTTTTAGATGTCATAA
AAGTTATATTGTAAATTTAAAGTATATTGAAAGCTATGATAATGTATTTATAACCTTAATAAACTCAGATAAAATATATG
TTTCAAAATATAGATTAGATGATTTTTCAAAGGCCTTTATGTATTATTTAAAAAATGAGGTTCAGTAA

Upstream 100 bases:

>100_bases
TATAATCGCTTAAAACTTATTTTATTACCATCTAGTTTTAGCCTATAAAATTTTATTTATAGACTTAGTTAGATGGTATA
CTTACTTTGGAGGTGATTCA

Downstream 100 bases:

>100_bases
TTATGGAAAAACAACAAATATTACAGATTTGTCGATTTTTATCAGGATACTCAACAATGATTTTTCTATATACAATCAAA
TACTATTTCTATAAAAATTT

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MLKLAICDDEKAQREEIVGIIVEALRLKNKQYKISEFDNGEDLISSTDDFDIYFLDIKMDKLTGLEVAKKIRLINGEAVI
VFITGLKDYVFDAFDVKAFHYILKPINESKLKDVLYSALLQFDKKDKFIIAKTISQATKIFLKDIMYIESQHRKLKIHTK
NNIIEYYHKISDIEKELYGCNFFRCHKSYIVNLKYIESYDNVFITLINSDKIYVSKYRLDDFSKAFMYYLKNEVQ

Sequences:

>Translated_235_residues
MLKLAICDDEKAQREEIVGIIVEALRLKNKQYKISEFDNGEDLISSTDDFDIYFLDIKMDKLTGLEVAKKIRLINGEAVI
VFITGLKDYVFDAFDVKAFHYILKPINESKLKDVLYSALLQFDKKDKFIIAKTISQATKIFLKDIMYIESQHRKLKIHTK
NNIIEYYHKISDIEKELYGCNFFRCHKSYIVNLKYIESYDNVFITLINSDKIYVSKYRLDDFSKAFMYYLKNEVQ
>Mature_235_residues
MLKLAICDDEKAQREEIVGIIVEALRLKNKQYKISEFDNGEDLISSTDDFDIYFLDIKMDKLTGLEVAKKIRLINGEAVI
VFITGLKDYVFDAFDVKAFHYILKPINESKLKDVLYSALLQFDKKDKFIIAKTISQATKIFLKDIMYIESQHRKLKIHTK
NNIIEYYHKISDIEKELYGCNFFRCHKSYIVNLKYIESYDNVFITLINSDKIYVSKYRLDDFSKAFMYYLKNEVQ

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=217, Percent_Identity=28.110599078341, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI87082052, Length=248, Percent_Identity=27.0161290322581, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 27780; Mature: 27780

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLAICDDEKAQREEIVGIIVEALRLKNKQYKISEFDNGEDLISSTDDFDIYFLDIKMD
CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHCCCCCCEEEEEEEEEC
KLTGLEVAKKIRLINGEAVIVFITGLKDYVFDAFDVKAFHYILKPINESKLKDVLYSALL
HHHHHHHHHHEEEECCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
QFDKKDKFIIAKTISQATKIFLKDIMYIESQHRKLKIHTKNNIIEYYHKISDIEKELYGC
HCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC
NFFRCHKSYIVNLKYIESYDNVFITLINSDKIYVSKYRLDDFSKAFMYYLKNEVQ
CCEEECHHHEEEEEEEECCCCEEEEEEECCEEEEEEECCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLKLAICDDEKAQREEIVGIIVEALRLKNKQYKISEFDNGEDLISSTDDFDIYFLDIKMD
CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHCCCCCCEEEEEEEEEC
KLTGLEVAKKIRLINGEAVIVFITGLKDYVFDAFDVKAFHYILKPINESKLKDVLYSALL
HHHHHHHHHHEEEECCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
QFDKKDKFIIAKTISQATKIFLKDIMYIESQHRKLKIHTKNNIIEYYHKISDIEKELYGC
HCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC
NFFRCHKSYIVNLKYIESYDNVFITLINSDKIYVSKYRLDDFSKAFMYYLKNEVQ
CCEEECHHHEEEEEEEECCCCEEEEEEECCEEEEEEECCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]