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The map label for this gene is appC [H]

Identifier: 170757306

GI number: 170757306

Start: 1359913

End: 1360761

Strand: Reverse

Name: appC [H]

Synonym: CLD_3343

Alternate gene names: 170757306

Gene position: 1360761-1359913 (Counterclockwise)

Preceding gene: 170754630

Following gene: 170756050

Centisome position: 34.38

GC content: 30.39

Gene sequence:

>849_bases
TTGTTCTTAAATGAAAGACTTAAACTAAATTTAAAAATACAATTTAAAGAAAATAAATTAGGATATATTTCCTTATCTAT
AATATTGATATTAATTCTTTTTTCAACTTTTTCTTTCTTGTCTCCTTATGATCCTAACAAAATAGATCTATCCAACAAAT
TAGTCAATCCTAGTTTAAAACATTTATTTGGCACAGATGAAATGGGGAGAGATTATTTTACCAGATCTTTATACGGGGGG
AGAGCTTCTTTAATAGTAGGCTTTATATCCATGATTATATCCACAGCCCTAGGAACTATTATAGGAACCTTTAGTGGCTA
TGTAGGTGGAAAGATAGATAATATAATAATGAGAATCATAGATATATTAATGTGTATTCCAACCTTTTTTCTCATACTTA
TAATTAATGCCTATTTAAAACCAGGTATAGAAAACATAATTATTATCATTGGATTGTTTGGCTGGATGGACATTGCTAGA
ATAGTTAGATCTCAAACCCTCTCATTAAAAGAAAGAGAATATGTACTATGTTCAAAAGCTTTAGGTGCTCCTAATAAAAG
AATTGTCTTTAAACATATAATTCCAAATGTTATACCCTCTGTAATGGTAGCCTCTACCATAAATATTGCATCTGCTATTC
TTACAGAGTCCTCCCTTAGTTTTTTAGGCTTAGGAGTTAGAGCACCTAATTCCTCTTGGGGAAGTATGCTACAAAATGCT
CAAGGCTTTATTTTCTCAGCACCCTATTTAGCTATATTTCCTGGGCTTTTTATACTTTTTACAGTTTTAAGTTTTAATAT
ATTAGGGGATATTTTTTCTGTGGCATTGGACCCTAAGGTGAATAAATGA

Upstream 100 bases:

>100_bases
CTATGTTAACTTCTGTTTTACTTATAATAGGTAACCTTTTAGCAGACATATGTTATAGCTTAATAGATCCTAGAATTAAA
GAGTTAGGTAGGTGATAAAT

Downstream 100 bases:

>100_bases
CAATCTTAAAAGAATCATTATATAGAACAAAATACTATATAATGATTCTTTTGTTAAATTTAAAGTAAATTGTTGACAAA
CTGTTCACAAAGTTATACAC

Product: putative oligopeptide ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MFLNERLKLNLKIQFKENKLGYISLSIILILILFSTFSFLSPYDPNKIDLSNKLVNPSLKHLFGTDEMGRDYFTRSLYGG
RASLIVGFISMIISTALGTIIGTFSGYVGGKIDNIIMRIIDILMCIPTFFLILIINAYLKPGIENIIIIIGLFGWMDIAR
IVRSQTLSLKEREYVLCSKALGAPNKRIVFKHIIPNVIPSVMVASTINIASAILTESSLSFLGLGVRAPNSSWGSMLQNA
QGFIFSAPYLAIFPGLFILFTVLSFNILGDIFSVALDPKVNK

Sequences:

>Translated_282_residues
MFLNERLKLNLKIQFKENKLGYISLSIILILILFSTFSFLSPYDPNKIDLSNKLVNPSLKHLFGTDEMGRDYFTRSLYGG
RASLIVGFISMIISTALGTIIGTFSGYVGGKIDNIIMRIIDILMCIPTFFLILIINAYLKPGIENIIIIIGLFGWMDIAR
IVRSQTLSLKEREYVLCSKALGAPNKRIVFKHIIPNVIPSVMVASTINIASAILTESSLSFLGLGVRAPNSSWGSMLQNA
QGFIFSAPYLAIFPGLFILFTVLSFNILGDIFSVALDPKVNK
>Mature_282_residues
MFLNERLKLNLKIQFKENKLGYISLSIILILILFSTFSFLSPYDPNKIDLSNKLVNPSLKHLFGTDEMGRDYFTRSLYGG
RASLIVGFISMIISTALGTIIGTFSGYVGGKIDNIIMRIIDILMCIPTFFLILIINAYLKPGIENIIIIIGLFGWMDIAR
IVRSQTLSLKEREYVLCSKALGAPNKRIVFKHIIPNVIPSVMVASTINIASAILTESSLSFLGLGVRAPNSSWGSMLQNA
QGFIFSAPYLAIFPGLFILFTVLSFNILGDIFSVALDPKVNK

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=270, Percent_Identity=38.5185185185185, Blast_Score=209, Evalue=2e-55,
Organism=Escherichia coli, GI1787760, Length=268, Percent_Identity=36.9402985074627, Blast_Score=201, Evalue=5e-53,
Organism=Escherichia coli, GI1789889, Length=245, Percent_Identity=38.7755102040816, Blast_Score=191, Evalue=6e-50,
Organism=Escherichia coli, GI1787498, Length=273, Percent_Identity=37.7289377289377, Blast_Score=174, Evalue=4e-45,
Organism=Escherichia coli, GI1789964, Length=276, Percent_Identity=36.5942028985507, Blast_Score=161, Evalue=5e-41,
Organism=Escherichia coli, GI1788505, Length=225, Percent_Identity=32.4444444444444, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1787549, Length=238, Percent_Identity=29.8319327731092, Blast_Score=123, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31243; Mature: 31243

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLNERLKLNLKIQFKENKLGYISLSIILILILFSTFSFLSPYDPNKIDLSNKLVNPSLK
CCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCHHHH
HLFGTDEMGRDYFTRSLYGGRASLIVGFISMIISTALGTIIGTFSGYVGGKIDNIIMRII
HHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
DILMCIPTFFLILIINAYLKPGIENIIIIIGLFGWMDIARIVRSQTLSLKEREYVLCSKA
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LGAPNKRIVFKHIIPNVIPSVMVASTINIASAILTESSLSFLGLGVRAPNSSWGSMLQNA
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHCC
QGFIFSAPYLAIFPGLFILFTVLSFNILGDIFSVALDPKVNK
CCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MFLNERLKLNLKIQFKENKLGYISLSIILILILFSTFSFLSPYDPNKIDLSNKLVNPSLK
CCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCHHHH
HLFGTDEMGRDYFTRSLYGGRASLIVGFISMIISTALGTIIGTFSGYVGGKIDNIIMRII
HHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
DILMCIPTFFLILIINAYLKPGIENIIIIIGLFGWMDIARIVRSQTLSLKEREYVLCSKA
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LGAPNKRIVFKHIIPNVIPSVMVASTINIASAILTESSLSFLGLGVRAPNSSWGSMLQNA
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHCC
QGFIFSAPYLAIFPGLFILFTVLSFNILGDIFSVALDPKVNK
CCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]