| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is gltX
Identifier: 170756625
GI number: 170756625
Start: 1218299
End: 1219756
Strand: Reverse
Name: gltX
Synonym: CLD_3466
Alternate gene names: 170756625
Gene position: 1219756-1218299 (Counterclockwise)
Preceding gene: 170755072
Following gene: 170756219
Centisome position: 30.82
GC content: 30.45
Gene sequence:
>1458_bases ATGACAAACAAAGTCAGAACTAGATTCGCACCAAGTCCAACAGGTTATATGCATGTTGGTAACTTAAGAACTGCTTTATA TGCTTATTTAATAGCAAAGCATGATAATGGTGATTTTATATTAAGAATTGAGGATACAGATCAAGAAAGATTAGTAGAAG GTGCTTTAGATGTTATATATAATACTCTAAAAATTACTGGTCTTAGTCATGATGAAGGTCCAGATATTGGCGGACCTGTT GGTCCATATGTTCAAAGTGAAAGAAGAAATATATACATAGAATATGCTGAAAAGCTAATAGAAAAAGGAGAAGCATACTA CTGTTTCTGTTCAAAAGAAAGATTAGATATGCTAAGAGCTAATTCAGAGGCTTTAAAAAGACCTTTCAGATATGACAAAC ACTGCATAGATCTTTCTAAAGAAGAAATCGATAAAAAAATAGCTGAAGGTGTTCCATATGTTATAAGACAAAAAAATCCA ACTACTGGATCAACTTCTTTCCATGATGAAATATATGGAGATATTTCCGTAGATAATTCAGAATTAGATGATATGATTTT AATAAAATCCGATGGACTTCCAACATATAATTTTGCTAATGTAGTAGATGACCACCTTATGGGAATAACTCACGTAGTAC GTGGAAGTGAATATTTGTCATCTTCTCCTAAATATAATAGACTATATGAAGCTTTTGGCTGGGATGTTCCGATATACGTT CATTGCCCACCAATAATGAAAGATGAGCATCACAAATTAAGTAAGAGAAATGGAGATGCTTCTTTCGAAGATTTAATGGC TAAAGGTTACTTAAAAGAAGCTATCCTAAACTATATAGCTTTACTGGGATGGAACCCAGGTGGAGAAAAAGAAGTATTTT CTATGGAAGAATTAATAGAAGCCTTTAATTATAGAAATATAAATAAAGCTCCAGCAGTTTTTGATACAAAAAAATTAAAA TGGATGAACGGAGAATATATAAGAGCTTTATCTTTAGATAAATTCCATGAAATGGCTCTTCCTTATTATGAAGAAGCTTT GACTAGAGATTTAGATACTAAAAAAATAAGTGAACTTTTACACACTAGAGTAGAGGTTTTAAATGAAATTCCTGAACAAT TAGATTTCTTTAATAATCTTCTTGAATACTCTCCGAAAATGTATATTCATAAAAAAATGAAAACAACTTATGAAAATTCA TTAAAAAGCTTAGAAGAAGTTCTTCCTAAACTAGAAGCTCTAGAAAATTGGACTTTTGAAAATATTAAAGAAGTATGTAT GAATTTAGTTAAAGAACTTGAAGTTAAAAACGGTGTAGTTTTATGGCCTATAAGAACAGCAGTTTCTGGAAAACAATTTA CTCCTGGTGGAGCTTTTGAAATAGCTGATATATTAGGTAAGGAAGAAACTCTAGAAAGAATAAAAATAGGAATAGACAAA CTTAAAGCTTTACAATAA
Upstream 100 bases:
>100_bases AGGCCTTGTTATAAAATTTACTTATAAAATGAATTTTTACCTTTCGTCCAAGTGATGAAAGGTTTTATTTATAAATATTT TTTAAATGGGAGTGAAAACA
Downstream 100 bases:
>100_bases AATTATATTTTACACTTAAAAATTGTAATAAATATACACTAAGAAAAATCTCAGCTAATTATAGCTGAGATTTTATTTTT TTATTTTTTTATTTTTTTTA
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase; GluRS [H]
Number of amino acids: Translated: 485; Mature: 484
Protein sequence:
>485_residues MTNKVRTRFAPSPTGYMHVGNLRTALYAYLIAKHDNGDFILRIEDTDQERLVEGALDVIYNTLKITGLSHDEGPDIGGPV GPYVQSERRNIYIEYAEKLIEKGEAYYCFCSKERLDMLRANSEALKRPFRYDKHCIDLSKEEIDKKIAEGVPYVIRQKNP TTGSTSFHDEIYGDISVDNSELDDMILIKSDGLPTYNFANVVDDHLMGITHVVRGSEYLSSSPKYNRLYEAFGWDVPIYV HCPPIMKDEHHKLSKRNGDASFEDLMAKGYLKEAILNYIALLGWNPGGEKEVFSMEELIEAFNYRNINKAPAVFDTKKLK WMNGEYIRALSLDKFHEMALPYYEEALTRDLDTKKISELLHTRVEVLNEIPEQLDFFNNLLEYSPKMYIHKKMKTTYENS LKSLEEVLPKLEALENWTFENIKEVCMNLVKELEVKNGVVLWPIRTAVSGKQFTPGGAFEIADILGKEETLERIKIGIDK LKALQ
Sequences:
>Translated_485_residues MTNKVRTRFAPSPTGYMHVGNLRTALYAYLIAKHDNGDFILRIEDTDQERLVEGALDVIYNTLKITGLSHDEGPDIGGPV GPYVQSERRNIYIEYAEKLIEKGEAYYCFCSKERLDMLRANSEALKRPFRYDKHCIDLSKEEIDKKIAEGVPYVIRQKNP TTGSTSFHDEIYGDISVDNSELDDMILIKSDGLPTYNFANVVDDHLMGITHVVRGSEYLSSSPKYNRLYEAFGWDVPIYV HCPPIMKDEHHKLSKRNGDASFEDLMAKGYLKEAILNYIALLGWNPGGEKEVFSMEELIEAFNYRNINKAPAVFDTKKLK WMNGEYIRALSLDKFHEMALPYYEEALTRDLDTKKISELLHTRVEVLNEIPEQLDFFNNLLEYSPKMYIHKKMKTTYENS LKSLEEVLPKLEALENWTFENIKEVCMNLVKELEVKNGVVLWPIRTAVSGKQFTPGGAFEIADILGKEETLERIKIGIDK LKALQ >Mature_484_residues TNKVRTRFAPSPTGYMHVGNLRTALYAYLIAKHDNGDFILRIEDTDQERLVEGALDVIYNTLKITGLSHDEGPDIGGPVG PYVQSERRNIYIEYAEKLIEKGEAYYCFCSKERLDMLRANSEALKRPFRYDKHCIDLSKEEIDKKIAEGVPYVIRQKNPT TGSTSFHDEIYGDISVDNSELDDMILIKSDGLPTYNFANVVDDHLMGITHVVRGSEYLSSSPKYNRLYEAFGWDVPIYVH CPPIMKDEHHKLSKRNGDASFEDLMAKGYLKEAILNYIALLGWNPGGEKEVFSMEELIEAFNYRNINKAPAVFDTKKLKW MNGEYIRALSLDKFHEMALPYYEEALTRDLDTKKISELLHTRVEVLNEIPEQLDFFNNLLEYSPKMYIHKKMKTTYENSL KSLEEVLPKLEALENWTFENIKEVCMNLVKELEVKNGVVLWPIRTAVSGKQFTPGGAFEIADILGKEETLERIKIGIDKL KALQ
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) [H]
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI134288884, Length=487, Percent_Identity=34.7022587268994, Blast_Score=268, Evalue=1e-71, Organism=Escherichia coli, GI1788743, Length=483, Percent_Identity=37.888198757764, Blast_Score=309, Evalue=2e-85, Organism=Escherichia coli, GI226510925, Length=295, Percent_Identity=33.8983050847458, Blast_Score=157, Evalue=2e-39, Organism=Caenorhabditis elegans, GI71993394, Length=489, Percent_Identity=36.8098159509202, Blast_Score=265, Evalue=6e-71, Organism=Saccharomyces cerevisiae, GI6324540, Length=503, Percent_Identity=40.5566600397614, Blast_Score=324, Evalue=2e-89, Organism=Saccharomyces cerevisiae, GI6321192, Length=240, Percent_Identity=25, Blast_Score=70, Evalue=8e-13, Organism=Drosophila melanogaster, GI24665321, Length=493, Percent_Identity=36.105476673428, Blast_Score=304, Evalue=9e-83,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 [H]
Pfam domain/function: PF00749 tRNA-synt_1c [H]
EC number: =6.1.1.17 [H]
Molecular weight: Translated: 55742; Mature: 55611
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNKVRTRFAPSPTGYMHVGNLRTALYAYLIAKHDNGDFILRIEDTDQERLVEGALDVIY CCCCCCCCCCCCCCCEEEECHHHHHHHHHHHEEECCCCEEEEEECCCHHHHHHHHHHHHH NTLKITGLSHDEGPDIGGPVGPYVQSERRNIYIEYAEKLIEKGEAYYCFCSKERLDMLRA HHHHEEECCCCCCCCCCCCCCCCHHCCCCEEEHHHHHHHHHCCCEEEEEECHHHHHHHHC NSEALKRPFRYDKHCIDLSKEEIDKKIAEGVPYVIRQKNPTTGSTSFHDEIYGDISVDNS CHHHHHCCHHCCHHHHCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHCCCEECCCC ELDDMILIKSDGLPTYNFANVVDDHLMGITHVVRGSEYLSSSPKYNRLYEAFGWDVPIYV CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHCCCCEEEE HCPPIMKDEHHKLSKRNGDASFEDLMAKGYLKEAILNYIALLGWNPGGEKEVFSMEELIE ECCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH AFNYRNINKAPAVFDTKKLKWMNGEYIRALSLDKFHEMALPYYEEALTRDLDTKKISELL HHCCCCCCCCCCCCCCCCEEECCCCEEEEECHHHHHHHHCHHHHHHHHCCCCHHHHHHHH HTRVEVLNEIPEQLDFFNNLLEYSPKMYIHKKMKTTYENSLKSLEEVLPKLEALENWTFE HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH NIKEVCMNLVKELEVKNGVVLWPIRTAVSGKQFTPGGAFEIADILGKEETLERIKIGIDK HHHHHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHH LKALQ HHCCC >Mature Secondary Structure TNKVRTRFAPSPTGYMHVGNLRTALYAYLIAKHDNGDFILRIEDTDQERLVEGALDVIY CCCCCCCCCCCCCCEEEECHHHHHHHHHHHEEECCCCEEEEEECCCHHHHHHHHHHHHH NTLKITGLSHDEGPDIGGPVGPYVQSERRNIYIEYAEKLIEKGEAYYCFCSKERLDMLRA HHHHEEECCCCCCCCCCCCCCCCHHCCCCEEEHHHHHHHHHCCCEEEEEECHHHHHHHHC NSEALKRPFRYDKHCIDLSKEEIDKKIAEGVPYVIRQKNPTTGSTSFHDEIYGDISVDNS CHHHHHCCHHCCHHHHCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHCCCEECCCC ELDDMILIKSDGLPTYNFANVVDDHLMGITHVVRGSEYLSSSPKYNRLYEAFGWDVPIYV CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHCCCCEEEE HCPPIMKDEHHKLSKRNGDASFEDLMAKGYLKEAILNYIALLGWNPGGEKEVFSMEELIE ECCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH AFNYRNINKAPAVFDTKKLKWMNGEYIRALSLDKFHEMALPYYEEALTRDLDTKKISELL HHCCCCCCCCCCCCCCCCEEECCCCEEEEECHHHHHHHHCHHHHHHHHCCCCHHHHHHHH HTRVEVLNEIPEQLDFFNNLLEYSPKMYIHKKMKTTYENSLKSLEEVLPKLEALENWTFE HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH NIKEVCMNLVKELEVKNGVVLWPIRTAVSGKQFTPGGAFEIADILGKEETLERIKIGIDK HHHHHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHH LKALQ HHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA