| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170756601
Identifier: 170756601
GI number: 170756601
Start: 3699592
End: 3700887
Strand: Reverse
Name: 170756601
Synonym: CLD_1120
Alternate gene names: NA
Gene position: 3700887-3699592 (Counterclockwise)
Preceding gene: 170757682
Following gene: 170755543
Centisome position: 93.5
GC content: 27.39
Gene sequence:
>1296_bases ATGGACATATTACTAATTACATTAAAGGCGGTAGCTTATCTCTTGATAGAGCCTTATTCAGTAATAGTTTTATTATTGTT ATCATTGATTTTATATAGAAAAAATAGAAAAACTATCATAATGCAAAAAATGATAATAGGCCAAAAGGTAACTACAGCTT TTGAATTAACAATATCTGAAGTAGTATTAGGAATATTTGCAGGAACTGTGGCTAGTTTAATTATGTCCTATTTAGGAATA TTTTTTGGTGAAGATTCAGCAATTTATTTAATATTTTTAATATCTATGTTTTTTATGATATTTAATCCCAGATTTATATG CTTTTCTTATTCTGGAGCTGCATTGGGAATTATTAGTTTAATATTTTTAAATATGGCTAAATTATTAAATATGCCACAAT TAAATTTTGTTAATATAGATATACCGGCATTAATGTCAATGGTTGCTATATTACACTTAGTTGAGGGTATATTAGTTATG ATAGATGGAGATAGAGGATATGTTCCTGTTTTTACAAATAGAGATGATAAGATAATAGGAGGATTTGTACTCCAAAGATA TTGGATACTGCCAATAGCTTTTATGCTTATGCTTAACAACCAAGCTCTTTCAAATACTAGTCAAGGTGGAGTGCCTATGC CTAATTGGTGGCCTTTACTAAAATCAGGTTTACCATTAAGTGTACTTAATGCAGCGATTATGGGGTTGACATCCTTTTAT GGAATAATTGGTTATAATGCCGTTACTTTTACCAAAACTAGAAAAGAAAAAAAATTCATATCAGGATTATATATAATAAT ATATAGTCTAATACTTTTTATGCTTTCAAGATTAGCAGTTATGAATACATTACTTAAAGTAATTGTATTAATTTTTGCTC CAGTAGGTCACGAGGCTATGTTATATATACAAAAATATTTTGAATTAAAGGGAGAACCTAGATATATAAGCACAGAAGAA GGCATTATGGTATTAGATGTAGCAAAAGACTCTGTAGCAAATAAAATGGGTATAAAAAGTGGAGATTTATTATTACAGGT AAATGACAAAGAGATAGATAGTGAGGAAGATATAGTAAAATCTATAGGACAAATGTATGGACATATATCATTTAAGATAA AAAATGATGTAGGAAGATTAAAAACTGTAAATTATCGAATGTTAACTTCTTACGAAAAGTTAGGTATTGTATTTGTACCT AAAAATGTACCTAAAAATACATCCGTAATAAAAGTTAAAAGTGAAAAATTTCAAGACATATTAGAAAAAATTAAAAACAA AGATAAGGATGAATAA
Upstream 100 bases:
>100_bases AAGATAAGATAATATTGTATTTGATCTTTATATTTTTATATAGATGGTTTAGTTAGACTTTCTAACTAAACCATAGTTAT GGAGAGGGGAATTTTTTTTA
Downstream 100 bases:
>100_bases GATGAACCAATTTAAGGTAATTTCAAAATTTAATCCTACAGGAGATCAACCTAAAGCTATAAAATCTATTGCTAAAGGTA TAGAAAAAAGAGAAAAATTT
Product: hypothetical protein
Products: NA
Alternate protein names: C-Terminal PDZ Domain-Containing Protein; PDZ/DHR/GLGF Domain-Containing Protein; Pological Determinant; Serine Protease; Trypsin-Like Serine Protease; Pdz/Dhr/Glgf Domain Protein; Membrane Spanning Protein
Number of amino acids: Translated: 431; Mature: 431
Protein sequence:
>431_residues MDILLITLKAVAYLLIEPYSVIVLLLLSLILYRKNRKTIIMQKMIIGQKVTTAFELTISEVVLGIFAGTVASLIMSYLGI FFGEDSAIYLIFLISMFFMIFNPRFICFSYSGAALGIISLIFLNMAKLLNMPQLNFVNIDIPALMSMVAILHLVEGILVM IDGDRGYVPVFTNRDDKIIGGFVLQRYWILPIAFMLMLNNQALSNTSQGGVPMPNWWPLLKSGLPLSVLNAAIMGLTSFY GIIGYNAVTFTKTRKEKKFISGLYIIIYSLILFMLSRLAVMNTLLKVIVLIFAPVGHEAMLYIQKYFELKGEPRYISTEE GIMVLDVAKDSVANKMGIKSGDLLLQVNDKEIDSEEDIVKSIGQMYGHISFKIKNDVGRLKTVNYRMLTSYEKLGIVFVP KNVPKNTSVIKVKSEKFQDILEKIKNKDKDE
Sequences:
>Translated_431_residues MDILLITLKAVAYLLIEPYSVIVLLLLSLILYRKNRKTIIMQKMIIGQKVTTAFELTISEVVLGIFAGTVASLIMSYLGI FFGEDSAIYLIFLISMFFMIFNPRFICFSYSGAALGIISLIFLNMAKLLNMPQLNFVNIDIPALMSMVAILHLVEGILVM IDGDRGYVPVFTNRDDKIIGGFVLQRYWILPIAFMLMLNNQALSNTSQGGVPMPNWWPLLKSGLPLSVLNAAIMGLTSFY GIIGYNAVTFTKTRKEKKFISGLYIIIYSLILFMLSRLAVMNTLLKVIVLIFAPVGHEAMLYIQKYFELKGEPRYISTEE GIMVLDVAKDSVANKMGIKSGDLLLQVNDKEIDSEEDIVKSIGQMYGHISFKIKNDVGRLKTVNYRMLTSYEKLGIVFVP KNVPKNTSVIKVKSEKFQDILEKIKNKDKDE >Mature_431_residues MDILLITLKAVAYLLIEPYSVIVLLLLSLILYRKNRKTIIMQKMIIGQKVTTAFELTISEVVLGIFAGTVASLIMSYLGI FFGEDSAIYLIFLISMFFMIFNPRFICFSYSGAALGIISLIFLNMAKLLNMPQLNFVNIDIPALMSMVAILHLVEGILVM IDGDRGYVPVFTNRDDKIIGGFVLQRYWILPIAFMLMLNNQALSNTSQGGVPMPNWWPLLKSGLPLSVLNAAIMGLTSFY GIIGYNAVTFTKTRKEKKFISGLYIIIYSLILFMLSRLAVMNTLLKVIVLIFAPVGHEAMLYIQKYFELKGEPRYISTEE GIMVLDVAKDSVANKMGIKSGDLLLQVNDKEIDSEEDIVKSIGQMYGHISFKIKNDVGRLKTVNYRMLTSYEKLGIVFVP KNVPKNTSVIKVKSEKFQDILEKIKNKDKDE
Specific function: Unknown
COG id: COG0265
COG function: function code O; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48566; Mature: 48566
Theoretical pI: Translated: 9.67; Mature: 9.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 5.1 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDILLITLKAVAYLLIEPYSVIVLLLLSLILYRKNRKTIIMQKMIIGQKVTTAFELTISE CCEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHH VVLGIFAGTVASLIMSYLGIFFGEDSAIYLIFLISMFFMIFNPRFICFSYSGAALGIISL HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHH IFLNMAKLLNMPQLNFVNIDIPALMSMVAILHLVEGILVMIDGDRGYVPVFTNRDDKIIG HHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCEEEEEECCCCCHHH GFVLQRYWILPIAFMLMLNNQALSNTSQGGVPMPNWWPLLKSGLPLSVLNAAIMGLTSFY HHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHH GIIGYNAVTFTKTRKEKKFISGLYIIIYSLILFMLSRLAVMNTLLKVIVLIFAPVGHEAM HHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH LYIQKYFELKGEPRYISTEEGIMVLDVAKDSVANKMGIKSGDLLLQVNDKEIDSEEDIVK HHHHHHHHCCCCCCEEECCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHH SIGQMYGHISFKIKNDVGRLKTVNYRMLTSYEKLGIVFVPKNVPKNTSVIKVKSEKFQDI HHHHHHCEEEEEEECCCCCEEECCHHHHCCHHHCCEEEECCCCCCCCCEEEECHHHHHHH LEKIKNKDKDE HHHHHCCCCCC >Mature Secondary Structure MDILLITLKAVAYLLIEPYSVIVLLLLSLILYRKNRKTIIMQKMIIGQKVTTAFELTISE CCEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHH VVLGIFAGTVASLIMSYLGIFFGEDSAIYLIFLISMFFMIFNPRFICFSYSGAALGIISL HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHH IFLNMAKLLNMPQLNFVNIDIPALMSMVAILHLVEGILVMIDGDRGYVPVFTNRDDKIIG HHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCEEEEEECCCCCHHH GFVLQRYWILPIAFMLMLNNQALSNTSQGGVPMPNWWPLLKSGLPLSVLNAAIMGLTSFY HHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHH GIIGYNAVTFTKTRKEKKFISGLYIIIYSLILFMLSRLAVMNTLLKVIVLIFAPVGHEAM HHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH LYIQKYFELKGEPRYISTEEGIMVLDVAKDSVANKMGIKSGDLLLQVNDKEIDSEEDIVK HHHHHHHHCCCCCCEEECCCCEEEEEECHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHH SIGQMYGHISFKIKNDVGRLKTVNYRMLTSYEKLGIVFVPKNVPKNTSVIKVKSEKFQDI HHHHHHCEEEEEEECCCCCEEECCHHHHCCHHHCCEEEECCCCCCCCCEEEECHHHHHHH LEKIKNKDKDE HHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA