Definition | Clostridium botulinum B1 str. Okra, complete genome. |
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Accession | NC_010516 |
Length | 3,958,233 |
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The map label for this gene is 170756557
Identifier: 170756557
GI number: 170756557
Start: 1354817
End: 1355785
Strand: Reverse
Name: 170756557
Synonym: CLD_3348
Alternate gene names: NA
Gene position: 1355785-1354817 (Counterclockwise)
Preceding gene: 170756101
Following gene: 170757582
Centisome position: 34.25
GC content: 27.86
Gene sequence:
>969_bases ATGAATTTTATAGATATGCATTGTGACACTATATACGCTCTTATAAATAAAAAACCCTGCTCTAATAAAAACATTGCAAT AAGTGAAAATGAAACTTTATATAAAAACTCATTAAGTGTAGATATAGAAAAACTGGAAGCTTCCAATTCTCTAGCTCAAT TTTTTGCTTTGTTTATAGATATAAATGAAACTAACTCTCCTTTAAAAACTACACTTAATATGTTAGATTTTTTTCATAAT GAATTGGCAAAACACTCAAAGTATATTGCACTTTCTAAAAACTATGAAGATATAAATAAAAACCTATCAAATAATAAAAT CTCTGCTTTTTTAACTATAGAAGAAGGAGCTGCTTTGGAAGGCACTTTATATAATCTTAGAAATTTTTATAGATTAGGTG TTAGACTTATAACCCTAACCTGGAACTTTCCTAATGAAATAGGATTTCCAAACTGCAAAAAAGAATTCATGAATAAGGGC TTGACTCCCTTTGGATTAGAAGTAGTAGAAGAAATGAACAAATTAAGAATGATAATAGATGTATCTCATCTATCCGATGG AGGTTTTTATGATGTAGTAAGATACTCGAAATCTCCTTTTGTGGCCTCTCATTCAAATGCAAGAACTATAACAAATCATC CTAGAAACTTAACAGATGATATGATAAAAATTTTATCTAATAAAGGTGGTGTTATGGGAATAAATTTTGAAAAAACTTTT TTAGGTCAAAGTGAAGAAGGAAAAATATCAGAAATGATAGATCATATAAAACATATAAAAAATGTAGGCGGAATTGATGT AATGTGCATAGGCTCAGATTTTGATGGCATCGAAACTCCTAGTGAAATAAAATCTAGTGATGACATAGAAAAACTAATAA ATGCACTAAAAAAGGAAAGCTTTCATGAAAGTGAAATAGAAAAAATACTATACAAAAATGCGCTTAGGGTTATAAAAGAA ATTTTATAA
Upstream 100 bases:
>100_bases AATCATACATATTTATGTGGTTATAAGTTAATCTTAAATATGCTCATACATACTAATTTTTTTGCAATATAATAATTTCT ATATAAACTGGAGGTACAAA
Downstream 100 bases:
>100_bases GAAAATTACGATTTAAAAGTGAGTTACACTACCATTGGTTTAAAAAAGGGATATGTGTTTAGAAAGGCAACTCACTTCGA TAAGAGATTCTAATTTGTTT
Product: dipeptidase family protein
Products: NA
Alternate protein names: ORF X [H]
Number of amino acids: Translated: 322; Mature: 322
Protein sequence:
>322_residues MNFIDMHCDTIYALINKKPCSNKNIAISENETLYKNSLSVDIEKLEASNSLAQFFALFIDINETNSPLKTTLNMLDFFHN ELAKHSKYIALSKNYEDINKNLSNNKISAFLTIEEGAALEGTLYNLRNFYRLGVRLITLTWNFPNEIGFPNCKKEFMNKG LTPFGLEVVEEMNKLRMIIDVSHLSDGGFYDVVRYSKSPFVASHSNARTITNHPRNLTDDMIKILSNKGGVMGINFEKTF LGQSEEGKISEMIDHIKHIKNVGGIDVMCIGSDFDGIETPSEIKSSDDIEKLINALKKESFHESEIEKILYKNALRVIKE IL
Sequences:
>Translated_322_residues MNFIDMHCDTIYALINKKPCSNKNIAISENETLYKNSLSVDIEKLEASNSLAQFFALFIDINETNSPLKTTLNMLDFFHN ELAKHSKYIALSKNYEDINKNLSNNKISAFLTIEEGAALEGTLYNLRNFYRLGVRLITLTWNFPNEIGFPNCKKEFMNKG LTPFGLEVVEEMNKLRMIIDVSHLSDGGFYDVVRYSKSPFVASHSNARTITNHPRNLTDDMIKILSNKGGVMGINFEKTF LGQSEEGKISEMIDHIKHIKNVGGIDVMCIGSDFDGIETPSEIKSSDDIEKLINALKKESFHESEIEKILYKNALRVIKE IL >Mature_322_residues MNFIDMHCDTIYALINKKPCSNKNIAISENETLYKNSLSVDIEKLEASNSLAQFFALFIDINETNSPLKTTLNMLDFFHN ELAKHSKYIALSKNYEDINKNLSNNKISAFLTIEEGAALEGTLYNLRNFYRLGVRLITLTWNFPNEIGFPNCKKEFMNKG LTPFGLEVVEEMNKLRMIIDVSHLSDGGFYDVVRYSKSPFVASHSNARTITNHPRNLTDDMIKILSNKGGVMGINFEKTF LGQSEEGKISEMIDHIKHIKNVGGIDVMCIGSDFDGIETPSEIKSSDDIEKLINALKKESFHESEIEKILYKNALRVIKE IL
Specific function: Unknown
COG id: COG2355
COG function: function code E; Zn-dependent dipeptidase, microsomal dipeptidase homolog
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M19 family [H]
Homologues:
Organism=Homo sapiens, GI189458885, Length=291, Percent_Identity=27.1477663230241, Blast_Score=142, Evalue=3e-34, Organism=Homo sapiens, GI4758190, Length=291, Percent_Identity=27.1477663230241, Blast_Score=142, Evalue=3e-34, Organism=Homo sapiens, GI11641269, Length=276, Percent_Identity=31.8840579710145, Blast_Score=142, Evalue=5e-34, Organism=Homo sapiens, GI193211608, Length=278, Percent_Identity=30.5755395683453, Blast_Score=137, Evalue=2e-32, Organism=Homo sapiens, GI193211610, Length=278, Percent_Identity=30.9352517985612, Blast_Score=135, Evalue=7e-32, Organism=Drosophila melanogaster, GI221475880, Length=290, Percent_Identity=30, Blast_Score=150, Evalue=2e-36, Organism=Drosophila melanogaster, GI281362638, Length=289, Percent_Identity=30.4498269896194, Blast_Score=146, Evalue=2e-35, Organism=Drosophila melanogaster, GI281362636, Length=289, Percent_Identity=30.4498269896194, Blast_Score=146, Evalue=2e-35, Organism=Drosophila melanogaster, GI161083233, Length=287, Percent_Identity=26.1324041811847, Blast_Score=143, Evalue=1e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008257 [H]
Pfam domain/function: PF01244 Peptidase_M19 [H]
EC number: NA
Molecular weight: Translated: 36551; Mature: 36551
Theoretical pI: Translated: 6.06; Mature: 6.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNFIDMHCDTIYALINKKPCSNKNIAISENETLYKNSLSVDIEKLEASNSLAQFFALFID CCEEHHHHHHHHHHHCCCCCCCCCEEECCCCEEECCCCCHHHHHHHCCHHHHHHHHHHEE INETNSPLKTTLNMLDFFHNELAKHSKYIALSKNYEDINKNLSNNKISAFLTIEEGAALE ECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCCCEEEEEEECCCCCCH GTLYNLRNFYRLGVRLITLTWNFPNEIGFPNCKKEFMNKGLTPFGLEVVEEMNKLRMIID HHHHHHHHHHHHCEEEEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHEEEEE VSHLSDGGFYDVVRYSKSPFVASHSNARTITNHPRNLTDDMIKILSNKGGVMGINFEKTF EEECCCCCCCHHHHCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECHHHH LGQSEEGKISEMIDHIKHIKNVGGIDVMCIGSDFDGIETPSEIKSSDDIEKLINALKKES CCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHCC FHESEIEKILYKNALRVIKEIL CCHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure MNFIDMHCDTIYALINKKPCSNKNIAISENETLYKNSLSVDIEKLEASNSLAQFFALFID CCEEHHHHHHHHHHHCCCCCCCCCEEECCCCEEECCCCCHHHHHHHCCHHHHHHHHHHEE INETNSPLKTTLNMLDFFHNELAKHSKYIALSKNYEDINKNLSNNKISAFLTIEEGAALE ECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCCCEEEEEEECCCCCCH GTLYNLRNFYRLGVRLITLTWNFPNEIGFPNCKKEFMNKGLTPFGLEVVEEMNKLRMIID HHHHHHHHHHHHCEEEEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHEEEEE VSHLSDGGFYDVVRYSKSPFVASHSNARTITNHPRNLTDDMIKILSNKGGVMGINFEKTF EEECCCCCCCHHHHCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECHHHH LGQSEEGKISEMIDHIKHIKNVGGIDVMCIGSDFDGIETPSEIKSSDDIEKLINALKKES CCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHCC FHESEIEKILYKNALRVIKEIL CCHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1313537 [H]