| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is srlE [H]
Identifier: 170756010
GI number: 170756010
Start: 3727066
End: 3728070
Strand: Reverse
Name: srlE [H]
Synonym: CLD_1091
Alternate gene names: 170756010
Gene position: 3728070-3727066 (Counterclockwise)
Preceding gene: 170756315
Following gene: 170754273
Centisome position: 94.19
GC content: 34.73
Gene sequence:
>1005_bases ATGGCAAAACATAACGCAATAAAAGTTAATGCAGGAAATGGCGGTTTTGGAGGCCCTCTTACAATAGTTCCGACAGAGCA AAGAAATAAAATAGTTAATATAACTGGAGGAGTTATTTCAGACGTAGCAAAAAAATTAGAAGAGCTTACAGGCTGTGAAT TGGTAGACGGATTTAAAACAAAGGTACCAGATGATGAAATAGCTTGTGTAATAATAGATTGCGGTGGCACATTAAGATGT GGATTATATCCTAAAAAAGGTATACCAACTATAAACTTAATGCCAGCGGGACCAAGTGGACCATTAGCTGAATATATAAA AGCAGATATATATGTATCTTCTGTAAAGGTTAAGAATATTGAATTGGCGGATTCTTCTCAAAATAGTGAAAACGTTTATG AAGAAAATCAACAAGAAGAAGAAGTTAAGAAACCTAAATATGATACAACTAAAAAGATAACCCAACAATCTGATAGAGGT ATAATGACTAAGATAGGTATGGCTCTTGGTAATTTCGTAGGAATGCTATATCAAGCTGGTCGTGATACTATAGATACTGT TATAAAAACTATATTACCATTCATGGCATTTGTATGTATGCTAATAGGTATAATATTAAAATCTGGTATAGGAGATGCAT TTGCATCAGTATTATCTCCATTGGCAGGTAGCTTACCAGGATTAGTATTACTATCAGCTATATGCTCATTCCCATTATTG TCACCATTTTTAGGACCTGGTGCAGTTATAGCTCAAGTTATAGGTGTTTTAATTGGTGTTGAAATTGGTAAAGGTAATAT ACCACCACATTTAGCATTACCAGCATTATTTGCAATAAACTCTCAAGCAGCATGTGACTTTATACCAGTAGGTCTTGGAC TTGCAGAGGCAGAACCGGAAACAGTAGAAGTTGGGGTACCATCTGTTTTATATTCAAGATTTTTAACAGGCCCAACATCA GTATTTATTGCATGGCTTGCTAGCTTTGGATTATATGCTAAATAG
Upstream 100 bases:
>100_bases TTTCCTTAGAGGATGGATAACAGATTTCACAACTTCTTATGTAGAAAAACAACAAAATGTAAAATTATCTACAAAAATTT CACTTTAGGAGGTGTAATTG
Downstream 100 bases:
>100_bases ATTTGATTAAAAATAAAATATAAGAATAAAAGGATTGCATTCTTTTATTCTTATATTTAAATAATTTAAATTAATTTTTA CTTTGTATAATAATAATTTT
Product: PTS system, glucitol/sorbitol-specific, IIBC component
Products: NA
Alternate protein names: EII-Gut; PTS system glucitol/sorbitol-specific EIIB component [H]
Number of amino acids: Translated: 334; Mature: 333
Protein sequence:
>334_residues MAKHNAIKVNAGNGGFGGPLTIVPTEQRNKIVNITGGVISDVAKKLEELTGCELVDGFKTKVPDDEIACVIIDCGGTLRC GLYPKKGIPTINLMPAGPSGPLAEYIKADIYVSSVKVKNIELADSSQNSENVYEENQQEEEVKKPKYDTTKKITQQSDRG IMTKIGMALGNFVGMLYQAGRDTIDTVIKTILPFMAFVCMLIGIILKSGIGDAFASVLSPLAGSLPGLVLLSAICSFPLL SPFLGPGAVIAQVIGVLIGVEIGKGNIPPHLALPALFAINSQAACDFIPVGLGLAEAEPETVEVGVPSVLYSRFLTGPTS VFIAWLASFGLYAK
Sequences:
>Translated_334_residues MAKHNAIKVNAGNGGFGGPLTIVPTEQRNKIVNITGGVISDVAKKLEELTGCELVDGFKTKVPDDEIACVIIDCGGTLRC GLYPKKGIPTINLMPAGPSGPLAEYIKADIYVSSVKVKNIELADSSQNSENVYEENQQEEEVKKPKYDTTKKITQQSDRG IMTKIGMALGNFVGMLYQAGRDTIDTVIKTILPFMAFVCMLIGIILKSGIGDAFASVLSPLAGSLPGLVLLSAICSFPLL SPFLGPGAVIAQVIGVLIGVEIGKGNIPPHLALPALFAINSQAACDFIPVGLGLAEAEPETVEVGVPSVLYSRFLTGPTS VFIAWLASFGLYAK >Mature_333_residues AKHNAIKVNAGNGGFGGPLTIVPTEQRNKIVNITGGVISDVAKKLEELTGCELVDGFKTKVPDDEIACVIIDCGGTLRCG LYPKKGIPTINLMPAGPSGPLAEYIKADIYVSSVKVKNIELADSSQNSENVYEENQQEEEVKKPKYDTTKKITQQSDRGI MTKIGMALGNFVGMLYQAGRDTIDTVIKTILPFMAFVCMLIGIILKSGIGDAFASVLSPLAGSLPGLVLLSAICSFPLLS PFLGPGAVIAQVIGVLIGVEIGKGNIPPHLALPALFAINSQAACDFIPVGLGLAEAEPETVEVGVPSVLYSRFLTGPTSV FIAWLASFGLYAK
Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. This
COG id: COG3732
COG function: function code G; Phosphotransferase system sorbitol-specific component IIBC
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PTS EIIB type-5 domain [H]
Homologues:
Organism=Escherichia coli, GI48994905, Length=327, Percent_Identity=61.1620795107034, Blast_Score=372, Evalue=1e-104,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011638 - InterPro: IPR011618 - InterPro: IPR004702 [H]
Pfam domain/function: PF07663 EIIBC-GUT_C; PF03612 EIIBC-GUT_N [H]
EC number: =2.7.1.69 [H]
Molecular weight: Translated: 35168; Mature: 35036
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: PS51102 PTS_EIIB_TYPE_5
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKHNAIKVNAGNGGFGGPLTIVPTEQRNKIVNITGGVISDVAKKLEELTGCELVDGFKT CCCCCEEEEECCCCCCCCCEEEEECCCCCCEEEECCHHHHHHHHHHHHHCCCHHHCCHHC KVPDDEIACVIIDCGGTLRCGLYPKKGIPTINLMPAGPSGPLAEYIKADIYVSSVKVKNI CCCCCCEEEEEEECCCEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHEEEEEEEEEEE ELADSSQNSENVYEENQQEEEVKKPKYDTTKKITQQSDRGIMTKIGMALGNFVGMLYQAG EECCCCCCCCHHHHCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC RDTIDTVIKTILPFMAFVCMLIGIILKSGIGDAFASVLSPLAGSLPGLVLLSAICSFPLL CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH SPFLGPGAVIAQVIGVLIGVEIGKGNIPPHLALPALFAINSQAACDFIPVGLGLAEAEPE HHCCCCHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCC TVEVGVPSVLYSRFLTGPTSVFIAWLASFGLYAK EEECCCHHHHHHHHHCCHHHHHHHHHHHHCCCCC >Mature Secondary Structure AKHNAIKVNAGNGGFGGPLTIVPTEQRNKIVNITGGVISDVAKKLEELTGCELVDGFKT CCCCEEEEECCCCCCCCCEEEEECCCCCCEEEECCHHHHHHHHHHHHHCCCHHHCCHHC KVPDDEIACVIIDCGGTLRCGLYPKKGIPTINLMPAGPSGPLAEYIKADIYVSSVKVKNI CCCCCCEEEEEEECCCEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHEEEEEEEEEEE ELADSSQNSENVYEENQQEEEVKKPKYDTTKKITQQSDRGIMTKIGMALGNFVGMLYQAG EECCCCCCCCHHHHCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC RDTIDTVIKTILPFMAFVCMLIGIILKSGIGDAFASVLSPLAGSLPGLVLLSAICSFPLL CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH SPFLGPGAVIAQVIGVLIGVEIGKGNIPPHLALPALFAINSQAACDFIPVGLGLAEAEPE HHCCCCHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCC TVEVGVPSVLYSRFLTGPTSVFIAWLASFGLYAK EEECCCHHHHHHHHHCCHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9572925 [H]