| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170755452
Identifier: 170755452
GI number: 170755452
Start: 3748488
End: 3749228
Strand: Reverse
Name: 170755452
Synonym: CLD_1068
Alternate gene names: NA
Gene position: 3749228-3748488 (Counterclockwise)
Preceding gene: 170755729
Following gene: 170755667
Centisome position: 94.72
GC content: 25.24
Gene sequence:
>741_bases ATGTTAAAAAATAAGAAGATAGCACTAATACTAATTACCTTAATAATTTTTAGTTTTTCAATAGGATGTACTAAGGAGAA TAAGTCATCAGTTGAAAATACTAAGCAAGAAGAACAAAAGGTAGAATCTAATAATAATGATAAAGAAGAGAAAGATAAGA AGAATAATACTGAAGCTAAAAATGAAGAAAAGAAGGCTGAAAAAGAAGTTTCAGAAAAAACAAATTTTTCTAAAGTAGAA AAAGAAGAGATAGTAGATAAAAAGTTCCAAGGGGAAAATAATACTGAATGGAAAGAAAGTGAGCAAAAAAACTACTCAGC TATTGTAGAAGGCAAAGGAAATAATGGAGAAGAGGAAGGAATAGGTAAAGTTTATTTAAAAGAAAACAATACTAATAAAT TATGGTTGTTAAAAATCAATGAAATAAAAGATCAAAAAAGCCCTAAATTTTTATATTGGATAGATGATGAAAACTTATTA GTTATTATTGGCCATGGCTATGGAACAGTTTCTAAAGGTGGAAATTTATATTGTATAAATGTAAAAAATGATACTATTAT TCCAGTATACGAAGCAAAAGATAATAAACATGAAGTAATATCTGCGGAAAAGGTAAAGGATAATTCAGGGAAAACAAGCT TAATCTTAACATTAAATGTATATGAAGATGACAATTTTATTAAATCACATAAAGAAAAAATCACTATTTCTAATGATAAA GTAAAAGAATTTATTAAATAA
Upstream 100 bases:
>100_bases AAGCTTCATGTTAACTTTATGTTTTCATGGAGTTTTTTTTTACACAATTGATATTTTTAGATATAATTAGATATATATCT ATATTTTTGGAGGGGATAAT
Downstream 100 bases:
>100_bases GAACTATAGCTAAGAGAGGAAATTCAGATGAATAATGAAGCTAAATCTAGAAAAATATATACTAAGGCTTTAGACAATTT TGATAATGGAAATATAGATA
Product: putative lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 246; Mature: 246
Protein sequence:
>246_residues MLKNKKIALILITLIIFSFSIGCTKENKSSVENTKQEEQKVESNNNDKEEKDKKNNTEAKNEEKKAEKEVSEKTNFSKVE KEEIVDKKFQGENNTEWKESEQKNYSAIVEGKGNNGEEEGIGKVYLKENNTNKLWLLKINEIKDQKSPKFLYWIDDENLL VIIGHGYGTVSKGGNLYCINVKNDTIIPVYEAKDNKHEVISAEKVKDNSGKTSLILTLNVYEDDNFIKSHKEKITISNDK VKEFIK
Sequences:
>Translated_246_residues MLKNKKIALILITLIIFSFSIGCTKENKSSVENTKQEEQKVESNNNDKEEKDKKNNTEAKNEEKKAEKEVSEKTNFSKVE KEEIVDKKFQGENNTEWKESEQKNYSAIVEGKGNNGEEEGIGKVYLKENNTNKLWLLKINEIKDQKSPKFLYWIDDENLL VIIGHGYGTVSKGGNLYCINVKNDTIIPVYEAKDNKHEVISAEKVKDNSGKTSLILTLNVYEDDNFIKSHKEKITISNDK VKEFIK >Mature_246_residues MLKNKKIALILITLIIFSFSIGCTKENKSSVENTKQEEQKVESNNNDKEEKDKKNNTEAKNEEKKAEKEVSEKTNFSKVE KEEIVDKKFQGENNTEWKESEQKNYSAIVEGKGNNGEEEGIGKVYLKENNTNKLWLLKINEIKDQKSPKFLYWIDDENLL VIIGHGYGTVSKGGNLYCINVKNDTIIPVYEAKDNKHEVISAEKVKDNSGKTSLILTLNVYEDDNFIKSHKEKITISNDK VKEFIK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28243; Mature: 28243
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKNKKIALILITLIIFSFSIGCTKENKSSVENTKQEEQKVESNNNDKEEKDKKNNTEAK CCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCH NEEKKAEKEVSEKTNFSKVEKEEIVDKKFQGENNTEWKESEQKNYSAIVEGKGNNGEEEG HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCEEEEEECCCCCCCCC IGKVYLKENNTNKLWLLKINEIKDQKSPKFLYWIDDENLLVIIGHGYGTVSKGGNLYCIN CEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCEEEEE VKNDTIIPVYEAKDNKHEVISAEKVKDNSGKTSLILTLNVYEDDNFIKSHKEKITISNDK ECCCEEEEEEECCCCCCCEEEHHHCCCCCCCEEEEEEEEEECCCCHHHCCCCEEEECCHH VKEFIK HHHHCC >Mature Secondary Structure MLKNKKIALILITLIIFSFSIGCTKENKSSVENTKQEEQKVESNNNDKEEKDKKNNTEAK CCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCH NEEKKAEKEVSEKTNFSKVEKEEIVDKKFQGENNTEWKESEQKNYSAIVEGKGNNGEEEG HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCEEEEEECCCCCCCCC IGKVYLKENNTNKLWLLKINEIKDQKSPKFLYWIDDENLLVIIGHGYGTVSKGGNLYCIN CEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCEEEEE VKNDTIIPVYEAKDNKHEVISAEKVKDNSGKTSLILTLNVYEDDNFIKSHKEKITISNDK ECCCEEEEEEECCCCCCCEEEHHHCCCCCCCEEEEEEEEEECCCCHHHCCCCEEEECCHH VKEFIK HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA