Click here to switch to the map view.

The map label for this gene is yfkH [H]

Identifier: 170755009

GI number: 170755009

Start: 3714715

End: 3715572

Strand: Reverse

Name: yfkH [H]

Synonym: CLD_1104

Alternate gene names: 170755009

Gene position: 3715572-3714715 (Counterclockwise)

Preceding gene: 170755764

Following gene: 170757437

Centisome position: 93.87

GC content: 27.39

Gene sequence:

>858_bases
TTGAATAAGAATCTTATTAAAATCATACCTAAGAGTATAAAAAAACTAGCAAATAGGTTTCTAGAGGATGAAGTATTAGC
ATTATCCTCACAGTTGGCCTATGCTTTGATTATATCAGTATTTCCTTTCCTAATGTTTGTAATAACATTAATAGGATATT
TACCTATACATAGTGAAGATCTATTATTGGGATTAAAGGAGATAATGCCAAGCAATACTTATTTATTATTGAAAAATACT
ATAGAAGAAATTATTTATACTCAAAATGGAAATTTACTTTCCTTCAGTATAATATTTACTATTTGGACTGCTTCAGCTGG
TTTTAGAGCTGTAGTAAGAGGGTTAAATAGAGCATACGATGTAAAAGAGAGAAGATCCTTTATAAAAGTTCAAATCATGA
CCATTTTTTGTACATTAGGTATGGCATTTGTACTTGTTATGAGTATTTTTTTGTTGGTATTTGGAAAAACAATAGGCAGA
ACCTTAGTTTATAAACTAGGCTTTTCATTGGAGTTTAATAGGATATGGAATTTAATAAGATATATAATAATGATAGGGGT
AACTATATTTATTTTAGCTGCATTATATTACTATACTCCTAGTAAGAGATTAAGATGGATGGATGTATTACCTGGAGCTA
TATTTGCTACAATAGCTTGGATAATTGCTTCTATGGGTTTTTCTTTTTATGTAGATAATTTTAATAATTACTCTAGATTG
TATGGTAGTATAGGAGCGGTTATTGTTTTTTTAGTGTGGTTATATTTAACATCCATAATAGTTATTACAGGAGGAGAAAT
AAATGCATTATTAGTGTCAAGTAGAGAAAAGGATTTAAAAAATAAAAATTATTTATAA

Upstream 100 bases:

>100_bases
ATGATCTATTTTGAAATAAATCTTTAATTTTTAAATATACTAACTAATATTACTTTATATAGTATATAATTGTATTAAAA
TACTAAAAGGAGTTAGTGCT

Downstream 100 bases:

>100_bases
AAATGTATTGATTAAACAAATTTTTTAATATATAATTATTATTAAATTAAATATGGATTCTTATCCAGAGCGGCGGAGGG
ACTGGCCCTATGAAGCCCGG

Product: YihY family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MNKNLIKIIPKSIKKLANRFLEDEVLALSSQLAYALIISVFPFLMFVITLIGYLPIHSEDLLLGLKEIMPSNTYLLLKNT
IEEIIYTQNGNLLSFSIIFTIWTASAGFRAVVRGLNRAYDVKERRSFIKVQIMTIFCTLGMAFVLVMSIFLLVFGKTIGR
TLVYKLGFSLEFNRIWNLIRYIIMIGVTIFILAALYYYTPSKRLRWMDVLPGAIFATIAWIIASMGFSFYVDNFNNYSRL
YGSIGAVIVFLVWLYLTSIIVITGGEINALLVSSREKDLKNKNYL

Sequences:

>Translated_285_residues
MNKNLIKIIPKSIKKLANRFLEDEVLALSSQLAYALIISVFPFLMFVITLIGYLPIHSEDLLLGLKEIMPSNTYLLLKNT
IEEIIYTQNGNLLSFSIIFTIWTASAGFRAVVRGLNRAYDVKERRSFIKVQIMTIFCTLGMAFVLVMSIFLLVFGKTIGR
TLVYKLGFSLEFNRIWNLIRYIIMIGVTIFILAALYYYTPSKRLRWMDVLPGAIFATIAWIIASMGFSFYVDNFNNYSRL
YGSIGAVIVFLVWLYLTSIIVITGGEINALLVSSREKDLKNKNYL
>Mature_285_residues
MNKNLIKIIPKSIKKLANRFLEDEVLALSSQLAYALIISVFPFLMFVITLIGYLPIHSEDLLLGLKEIMPSNTYLLLKNT
IEEIIYTQNGNLLSFSIIFTIWTASAGFRAVVRGLNRAYDVKERRSFIKVQIMTIFCTLGMAFVLVMSIFLLVFGKTIGR
TLVYKLGFSLEFNRIWNLIRYIIMIGVTIFILAALYYYTPSKRLRWMDVLPGAIFATIAWIIASMGFSFYVDNFNNYSRL
YGSIGAVIVFLVWLYLTSIIVITGGEINALLVSSREKDLKNKNYL

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 32579; Mature: 32579

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKNLIKIIPKSIKKLANRFLEDEVLALSSQLAYALIISVFPFLMFVITLIGYLPIHSED
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
LLLGLKEIMPSNTYLLLKNTIEEIIYTQNGNLLSFSIIFTIWTASAGFRAVVRGLNRAYD
HHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHC
VKERRSFIKVQIMTIFCTLGMAFVLVMSIFLLVFGKTIGRTLVYKLGFSLEFNRIWNLIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHH
YIIMIGVTIFILAALYYYTPSKRLRWMDVLPGAIFATIAWIIASMGFSFYVDNFNNYSRL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHCCHHEEECCCCHHHHH
YGSIGAVIVFLVWLYLTSIIVITGGEINALLVSSREKDLKNKNYL
HHHHHHHHHHHHHHHHHHHHHEECCCEEEEEECCHHHHCCCCCCC
>Mature Secondary Structure
MNKNLIKIIPKSIKKLANRFLEDEVLALSSQLAYALIISVFPFLMFVITLIGYLPIHSED
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
LLLGLKEIMPSNTYLLLKNTIEEIIYTQNGNLLSFSIIFTIWTASAGFRAVVRGLNRAYD
HHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCEEEHHHHHHHHHCCCHHHHHHHHHHHHHC
VKERRSFIKVQIMTIFCTLGMAFVLVMSIFLLVFGKTIGRTLVYKLGFSLEFNRIWNLIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHH
YIIMIGVTIFILAALYYYTPSKRLRWMDVLPGAIFATIAWIIASMGFSFYVDNFNNYSRL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHCCHHEEECCCCHHHHH
YGSIGAVIVFLVWLYLTSIIVITGGEINALLVSSREKDLKNKNYL
HHHHHHHHHHHHHHHHHHHHHEECCCEEEEEECCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]