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The map label for this gene is rbcR [H]

Identifier: 170754668

GI number: 170754668

Start: 1747116

End: 1748006

Strand: Reverse

Name: rbcR [H]

Synonym: CLD_2974

Alternate gene names: 170754668

Gene position: 1748006-1747116 (Counterclockwise)

Preceding gene: 170755546

Following gene: 170754423

Centisome position: 44.16

GC content: 27.72

Gene sequence:

>891_bases
ATGAATTTTGAATATCTCCAATCTTTTTATATAACTGTAAAATGTAATAGCATATCAAAGGCAGCTGAAGCTCTGCACCT
TACCCAACCAGGGCTTAGTATGCAACTTAAAAATCTTGAAAAAGAAATTGGAGCAGATCTATTGATAAGAAGTAATAAGG
GAGTGAGACCTACAGAGGAAGGTAAAATTATATACAATTATGCGGACACTATTCTATCTATGAAAGACAATATAGAAAGA
GATATTAAAAATATAAAAAAAACTAGACCTAAATTAATCATAAGTTCTTGTAAAAGTGTGGGCGAATATGCACTACCTTG
CAGCATATACATTTTTAAAAAGTTTAATAAAGAAGTGGACATAGATATGGAAATATTAAATTCTACCGAGGTTATGGAAA
AATTATGTAATCACTCTAGTAATATTGGAATTATTCAAGATCTGCCTAAGGATAAAAGTATAGATGCAAAACTTATAACC
TCAGATGAATTAATTTTGGTGGGGAATAATAAATATAACAAAGATAACATCACTTTAGAAGAACTAAAAAATTTACCATT
AATTTTACGAGAAAAAACATCTAGTGCCACATATTTAGTAAAAAAAGCTCTTTCTGAAAAAGGAGTTAGTATAGAGGACT
TAAACATTGTATATAATCTTAACTCTCCAGAAGCTATTAAGTCTTCCATATGTGCCGGAAAAGGTTTTGCTTTCTTACCT
AAACTAACGGTGAAAAAAGAGTTAAAAAAAGAAAGTATTAAGCATATAAATTTGGAAAATATAGATATTAAATTTAATTA
TTATGTAATATTTCGAAAAAATTATGTATTTACCAAATACGAAAAAATGTTTGTTGATTTTATAATATCTAGAAAAAGGG
GATTCTGCTAA

Upstream 100 bases:

>100_bases
ATCATTGCACCCTATTTTATAATAAGTAAGTGTTATACTGCATAACAGTTGCTTATATAGCAGTTATCTAAAATTATTAA
TTCTAAGGATGTGAACATAT

Downstream 100 bases:

>100_bases
TAAAAATTAAAGAAGTTTATATTATCTATTTTATAATATAAACTTCTTTAATATTAGCGTACCTACAAAGGCTCCTAAAG
TAATAAAAATCCAATATATC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MNFEYLQSFYITVKCNSISKAAEALHLTQPGLSMQLKNLEKEIGADLLIRSNKGVRPTEEGKIIYNYADTILSMKDNIER
DIKNIKKTRPKLIISSCKSVGEYALPCSIYIFKKFNKEVDIDMEILNSTEVMEKLCNHSSNIGIIQDLPKDKSIDAKLIT
SDELILVGNNKYNKDNITLEELKNLPLILREKTSSATYLVKKALSEKGVSIEDLNIVYNLNSPEAIKSSICAGKGFAFLP
KLTVKKELKKESIKHINLENIDIKFNYYVIFRKNYVFTKYEKMFVDFIISRKRGFC

Sequences:

>Translated_296_residues
MNFEYLQSFYITVKCNSISKAAEALHLTQPGLSMQLKNLEKEIGADLLIRSNKGVRPTEEGKIIYNYADTILSMKDNIER
DIKNIKKTRPKLIISSCKSVGEYALPCSIYIFKKFNKEVDIDMEILNSTEVMEKLCNHSSNIGIIQDLPKDKSIDAKLIT
SDELILVGNNKYNKDNITLEELKNLPLILREKTSSATYLVKKALSEKGVSIEDLNIVYNLNSPEAIKSSICAGKGFAFLP
KLTVKKELKKESIKHINLENIDIKFNYYVIFRKNYVFTKYEKMFVDFIISRKRGFC
>Mature_296_residues
MNFEYLQSFYITVKCNSISKAAEALHLTQPGLSMQLKNLEKEIGADLLIRSNKGVRPTEEGKIIYNYADTILSMKDNIER
DIKNIKKTRPKLIISSCKSVGEYALPCSIYIFKKFNKEVDIDMEILNSTEVMEKLCNHSSNIGIIQDLPKDKSIDAKLIT
SDELILVGNNKYNKDNITLEELKNLPLILREKTSSATYLVKKALSEKGVSIEDLNIVYNLNSPEAIKSSICAGKGFAFLP
KLTVKKELKKESIKHINLENIDIKFNYYVIFRKNYVFTKYEKMFVDFIISRKRGFC

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788297, Length=248, Percent_Identity=27.8225806451613, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1788481, Length=289, Percent_Identity=22.4913494809689, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787879, Length=195, Percent_Identity=25.1282051282051, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1790399, Length=296, Percent_Identity=21.2837837837838, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI157672245, Length=287, Percent_Identity=21.2543554006969, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI145693105, Length=289, Percent_Identity=21.7993079584775, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87082132, Length=250, Percent_Identity=20.4, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788748, Length=250, Percent_Identity=22, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788887, Length=167, Percent_Identity=25.748502994012, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33894; Mature: 33894

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFEYLQSFYITVKCNSISKAAEALHLTQPGLSMQLKNLEKEIGADLLIRSNKGVRPTEE
CCHHEEEEEEEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCC
GKIIYNYADTILSMKDNIERDIKNIKKTRPKLIISSCKSVGEYALPCSIYIFKKFNKEVD
CEEEEEEHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCC
IDMEILNSTEVMEKLCNHSSNIGIIQDLPKDKSIDAKLITSDELILVGNNKYNKDNITLE
CCCEECCHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEECCCEEEECCCCCCCCCCCHH
ELKNLPLILREKTSSATYLVKKALSEKGVSIEDLNIVYNLNSPEAIKSSICAGKGFAFLP
HHHCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHCCCCCEECC
KLTVKKELKKESIKHINLENIDIKFNYYVIFRKNYVFTKYEKMFVDFIISRKRGFC
CHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCEEEHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNFEYLQSFYITVKCNSISKAAEALHLTQPGLSMQLKNLEKEIGADLLIRSNKGVRPTEE
CCHHEEEEEEEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCC
GKIIYNYADTILSMKDNIERDIKNIKKTRPKLIISSCKSVGEYALPCSIYIFKKFNKEVD
CEEEEEEHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCC
IDMEILNSTEVMEKLCNHSSNIGIIQDLPKDKSIDAKLITSDELILVGNNKYNKDNITLE
CCCEECCHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEECCCEEEECCCCCCCCCCCHH
ELKNLPLILREKTSSATYLVKKALSEKGVSIEDLNIVYNLNSPEAIKSSICAGKGFAFLP
HHHCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHCCCCCEECC
KLTVKKELKKESIKHINLENIDIKFNYYVIFRKNYVFTKYEKMFVDFIISRKRGFC
CHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCEEEHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]