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The map label for this gene is ydaM [H]

Identifier: 170751898

GI number: 170751898

Start: 5847695

End: 5848849

Strand: Direct

Name: ydaM [H]

Synonym: Mrad2831_5530

Alternate gene names: 170751898

Gene position: 5847695-5848849 (Clockwise)

Preceding gene: 170751897

Following gene: 170751900

Centisome position: 96.21

GC content: 73.68

Gene sequence:

>1155_bases
GTGCAGCTTGATCCCGCCACCCTGCTGGTCGTCAGCGCGGCGACGACCTTCCTGGTCGGCACGCTGTTCATGGCCTCGTG
GCGGCAGGCGCCCGAGTCGCGCGTGCTCGCCTACTGGGGTGCGGCGCATCTCGTGGGCGCGGCCGGATCGGCCGGCCTCG
CGCTGCGCAATCAGATCCCCGACCTGATCTCTGTGGGCTTGGCCAACGCCGTGGTGCTCGCCGCCTACGGTCTGATCTGG
AGCGGCGTCCGCTCGTTCGAGCACCGCGAGCCGCGGCTGGGTATCGCGACGGCCGGCGCCCTGGGCTGGTGCGTCCTGTG
CCTGATCCCGACCTTCTACGCGTCGATCGAGGCCCGCATCATCTACGCCTCGGCGGTGGCGGCGCTCTACTGCTGCGCGG
CGACCGCGGAGATCTGGCGCGGTCGCGCCGAGCGGCTCGCCTCCCGGTTCGCCGCCGCCGCCATCCTGGGGCTGCACGGC
ACCTTCTACGTCGTGCGGATCCCCGCGACGCTGGTGGCGCCGCCGCAGCCGGGTCTCAGCCCGCTCGCGTCGCCCTGGGT
GGCGATCCTGTGCTTCGTCACCCTGATGTTCTCGATCGCCTCGGCCTTCACCTTCATGGCGCTGGTCAAGGAGCGGGCCG
AGCGCGAGCAGCGCATCGCCGCCTCCACGGACGCGCTCACGGGCGTGCGCAACCGCCGGGCCTTCGCGCAGGCCGCCGAG
GCCGCGATCGCGCGGCACGGCGACGCCGCCCTGCTGCTGTTCGATCTCGACCGGTTCAAGGCCGTCAACGACCGCTTCGG
TCACGGGGTCGGCGACGCGGTCCTCGTCGGCTTCTGCACCATGGCGACGACCCTGCTGCCCCGCGAGGCTCTGCTGGGCC
GCCTGGGCGGGGAGGAATTCGCCTGCCTGCTGCCGGACGTGTCGCCCGCCGAGGCCCTGGCCCGGGCCGAGGAGCTGCGC
CAGACCTTCGCGCAGCTCGGCATCCCCGAGCTTCCGGCTCTGCGCGTCAGCGTCAGCATCGGGATCGCGCAGGCCCGCGC
CGGCATCGCGTTCGACGCGCTGATGCGGCGGGCCGACACCGCCCTCTACGTCGCCAAGAACGGCGGGCGCGACCGGGTCG
CCGTGGCGGAGCCCGCCGCGACCCGCGCCGCCTGA

Upstream 100 bases:

>100_bases
ATAGAGTGTTATCGTGCCGAGGCCCGGATCGTTGCTCGGCCAGACTGCGATGCGGGGCGGGGACGGCGCCGACGTCCGGG
TCGAGGATTGACAGTCGTCC

Downstream 100 bases:

>100_bases
GGCGGGCGCGGGCCGCTCACGCGAGGGCGCGGGCGGCTTCCGAGACCTTGCGGACCGAGGCGTCGACCACGCCCGCCGAG
GCCGCGATCTCCGCCATGGC

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MQLDPATLLVVSAATTFLVGTLFMASWRQAPESRVLAYWGAAHLVGAAGSAGLALRNQIPDLISVGLANAVVLAAYGLIW
SGVRSFEHREPRLGIATAGALGWCVLCLIPTFYASIEARIIYASAVAALYCCAATAEIWRGRAERLASRFAAAAILGLHG
TFYVVRIPATLVAPPQPGLSPLASPWVAILCFVTLMFSIASAFTFMALVKERAEREQRIAASTDALTGVRNRRAFAQAAE
AAIARHGDAALLLFDLDRFKAVNDRFGHGVGDAVLVGFCTMATTLLPREALLGRLGGEEFACLLPDVSPAEALARAEELR
QTFAQLGIPELPALRVSVSIGIAQARAGIAFDALMRRADTALYVAKNGGRDRVAVAEPAATRAA

Sequences:

>Translated_384_residues
MQLDPATLLVVSAATTFLVGTLFMASWRQAPESRVLAYWGAAHLVGAAGSAGLALRNQIPDLISVGLANAVVLAAYGLIW
SGVRSFEHREPRLGIATAGALGWCVLCLIPTFYASIEARIIYASAVAALYCCAATAEIWRGRAERLASRFAAAAILGLHG
TFYVVRIPATLVAPPQPGLSPLASPWVAILCFVTLMFSIASAFTFMALVKERAEREQRIAASTDALTGVRNRRAFAQAAE
AAIARHGDAALLLFDLDRFKAVNDRFGHGVGDAVLVGFCTMATTLLPREALLGRLGGEEFACLLPDVSPAEALARAEELR
QTFAQLGIPELPALRVSVSIGIAQARAGIAFDALMRRADTALYVAKNGGRDRVAVAEPAATRAA
>Mature_384_residues
MQLDPATLLVVSAATTFLVGTLFMASWRQAPESRVLAYWGAAHLVGAAGSAGLALRNQIPDLISVGLANAVVLAAYGLIW
SGVRSFEHREPRLGIATAGALGWCVLCLIPTFYASIEARIIYASAVAALYCCAATAEIWRGRAERLASRFAAAAILGLHG
TFYVVRIPATLVAPPQPGLSPLASPWVAILCFVTLMFSIASAFTFMALVKERAEREQRIAASTDALTGVRNRRAFAQAAE
AAIARHGDAALLLFDLDRFKAVNDRFGHGVGDAVLVGFCTMATTLLPREALLGRLGGEEFACLLPDVSPAEALARAEELR
QTFAQLGIPELPALRVSVSIGIAQARAGIAFDALMRRADTALYVAKNGGRDRVAVAEPAATRAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=189, Percent_Identity=41.7989417989418, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1787802, Length=192, Percent_Identity=32.8125, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1786584, Length=193, Percent_Identity=30.5699481865285, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1787262, Length=172, Percent_Identity=34.8837209302326, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1788381, Length=188, Percent_Identity=36.7021276595745, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1787541, Length=180, Percent_Identity=36.1111111111111, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87082007, Length=202, Percent_Identity=32.1782178217822, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI145693134, Length=177, Percent_Identity=30.5084745762712, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788085, Length=167, Percent_Identity=30.5389221556886, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87081977, Length=163, Percent_Identity=31.2883435582822, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787056, Length=156, Percent_Identity=31.4102564102564, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787816, Length=157, Percent_Identity=30.5732484076433, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788956, Length=181, Percent_Identity=31.4917127071823, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 40587; Mature: 40587

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLDPATLLVVSAATTFLVGTLFMASWRQAPESRVLAYWGAAHLVGAAGSAGLALRNQIP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEHHHHHHHHHCCCCCCCHHHHHHCH
DLISVGLANAVVLAAYGLIWSGVRSFEHREPRLGIATAGALGWCVLCLIPTFYASIEARI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHH
IYASAVAALYCCAATAEIWRGRAERLASRFAAAAILGLHGTFYVVRIPATLVAPPQPGLS
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEEEEECEEEECCCCCCCC
PLASPWVAILCFVTLMFSIASAFTFMALVKERAEREQRIAASTDALTGVRNRRAFAQAAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAIARHGDAALLLFDLDRFKAVNDRFGHGVGDAVLVGFCTMATTLLPREALLGRLGGEEF
HHHHHCCCCEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCE
ACLLPDVSPAEALARAEELRQTFAQLGIPELPALRVSVSIGIAQARAGIAFDALMRRADT
EEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHCCHHHHHHHHHCCC
ALYVAKNGGRDRVAVAEPAATRAA
EEEEEECCCCCCEEEECCCCCCCC
>Mature Secondary Structure
MQLDPATLLVVSAATTFLVGTLFMASWRQAPESRVLAYWGAAHLVGAAGSAGLALRNQIP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEHHHHHHHHHCCCCCCCHHHHHHCH
DLISVGLANAVVLAAYGLIWSGVRSFEHREPRLGIATAGALGWCVLCLIPTFYASIEARI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHH
IYASAVAALYCCAATAEIWRGRAERLASRFAAAAILGLHGTFYVVRIPATLVAPPQPGLS
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEEEEECEEEECCCCCCCC
PLASPWVAILCFVTLMFSIASAFTFMALVKERAEREQRIAASTDALTGVRNRRAFAQAAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAIARHGDAALLLFDLDRFKAVNDRFGHGVGDAVLVGFCTMATTLLPREALLGRLGGEEF
HHHHHCCCCEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCE
ACLLPDVSPAEALARAEELRQTFAQLGIPELPALRVSVSIGIAQARAGIAFDALMRRADT
EEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHCCHHHHHHHHHCCC
ALYVAKNGGRDRVAVAEPAATRAA
EEEEEECCCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]