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The map label for this gene is cydA [H]

Identifier: 170751244

GI number: 170751244

Start: 5189890

End: 5191302

Strand: Reverse

Name: cydA [H]

Synonym: Mrad2831_4861

Alternate gene names: 170751244

Gene position: 5191302-5189890 (Counterclockwise)

Preceding gene: 170751245

Following gene: 170751243

Centisome position: 85.41

GC content: 69.71

Gene sequence:

>1413_bases
ATGGACATCTCCGCCCTGATGCTGTCGCGCATCCAGTTCGCCTTCACGGTCTCGTTCCACATCATCTTCCCGGCCTTCAC
GGTCGGCCTGGCGGCCTGGCTCGCCTTCCTCCAGGCGCGGGCGATGATCTCGGGCGAGCCGGTCTACGACCGCCTGTTCG
ACTTCTGGCTCAAGATCTTCGCGGTCGCCTTCGGGCTCGGCGTCGTCTCCGGCATCGTCATGGCGTTCCAGTTCGGGACC
AACTGGAGCGAGCTCGCCCGCCGCACCGGCCCGATCCAGGGGCCACTCCTCGGCTACGAGAGCTTCACGGCCTTCGCGCT
GGAGGCCTCGTTCTTCGGGGTGCTGATGTTCGGCCGCAGGCGGGTGCCGCGCTGGTTCTACCTGTTCGCCTGCCTGATGG
TCTGCCTCGGCACCAGCCTGTCGTCGTTCTGGATCCTCGTGAACAATTCGTGGATGCAGTACCCGACCGGCTTCGCCCTC
CGGCCGGACGGCGTGTTCGTGCCGACCGACTGGTGGGCGATCATCTTCAACGGAGTCGTCTGGGTCCGCTTCCCCCACAT
GGTCCTGGCCGCCTACGTCACCACCAGCTTCTGCGTGGCGGCGACGGGCGCGTGGTCGATGCTGCGCGGTCGGGACCGCG
CCGAGGCCCGCGCCATGGTCCGGATGGGGCTCGGCCTCGCCGCGGTCCTGGTGCCGCTGCAGCTGTTCTTCGGCCACCTC
ACCGGCGACTACGTGGTCAAGCACCAGCCCTCGAAGATCGCCGCGATCGAGGGCCACTGGGAGAGCCGGGCGCCGGCCGG
CGAGATCCTGTTCGCGTGGCCCGACGAGGCGCAGGAGAAGAACCACTTCGTCATCGCCCTGCCGGCGCCCGCCGGCAGCC
TGATCGACGACGGCACCCTCACCGGCAAGGTGATCGGCATCAAGGACATCCCCAAGGCCGACCGGCCGCCGGTGCTGATC
CCGTTCTTCGCCTTCCGCATCATGGTCGGCTGCGGGCTGCTGATGCTGGCCCTGGCCTGGGGCGGGATCGCCTTCTACGC
CACCGGGCGGCTGGAGCGGGCGCGCTGGCTGCAATGGGCGATCTTCCTGTCGTTCCCCTTGGGCTTCGTCGCGACGCTGA
CCGGCTGGTTCACCGCCGAGGTCGGGCGCCAGCCCTGGACGGTCTACGGCCAGCTGCGCACCGCCGACGCGGCGACGCCG
TTCCTGACCTCCCCGCAGGTGGCGACCTCGCTCGCCGTGTTCGGCGCGGTCTACGCGCTGATCTTCGCGGCCGGCACCGT
CTACATCTACCGCATGCTCAGGGCCGGCATCCTGCCGACGCCGGCCCATGTGGGGAGCGCCGCCAACCCCAAGCGGCCGC
TCGCCGTGCCGGGCAACAGTCCCGGCACCCCCAGCAGCAATCCGGCGGAGTGA

Upstream 100 bases:

>100_bases
GCGAGGCGCGGTTCCCCGCGCCCCGCCAGCGGACATCTGAGGGGGCGACGCGCCCGCTCCGGGGCGGCGGACCGGCGAGC
TTCGGCCGGAGAGAGGACCG

Downstream 100 bases:

>100_bases
GCGGCCGTGATCGAATTCTGGGCCGCCGCCCTCGCCCTCACCCTGATGCTCTACGTGCTGCTCGACGGGTTCGACCTCGG
CGTCGGCATGCTGTTCGGGA

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MDISALMLSRIQFAFTVSFHIIFPAFTVGLAAWLAFLQARAMISGEPVYDRLFDFWLKIFAVAFGLGVVSGIVMAFQFGT
NWSELARRTGPIQGPLLGYESFTAFALEASFFGVLMFGRRRVPRWFYLFACLMVCLGTSLSSFWILVNNSWMQYPTGFAL
RPDGVFVPTDWWAIIFNGVVWVRFPHMVLAAYVTTSFCVAATGAWSMLRGRDRAEARAMVRMGLGLAAVLVPLQLFFGHL
TGDYVVKHQPSKIAAIEGHWESRAPAGEILFAWPDEAQEKNHFVIALPAPAGSLIDDGTLTGKVIGIKDIPKADRPPVLI
PFFAFRIMVGCGLLMLALAWGGIAFYATGRLERARWLQWAIFLSFPLGFVATLTGWFTAEVGRQPWTVYGQLRTADAATP
FLTSPQVATSLAVFGAVYALIFAAGTVYIYRMLRAGILPTPAHVGSAANPKRPLAVPGNSPGTPSSNPAE

Sequences:

>Translated_470_residues
MDISALMLSRIQFAFTVSFHIIFPAFTVGLAAWLAFLQARAMISGEPVYDRLFDFWLKIFAVAFGLGVVSGIVMAFQFGT
NWSELARRTGPIQGPLLGYESFTAFALEASFFGVLMFGRRRVPRWFYLFACLMVCLGTSLSSFWILVNNSWMQYPTGFAL
RPDGVFVPTDWWAIIFNGVVWVRFPHMVLAAYVTTSFCVAATGAWSMLRGRDRAEARAMVRMGLGLAAVLVPLQLFFGHL
TGDYVVKHQPSKIAAIEGHWESRAPAGEILFAWPDEAQEKNHFVIALPAPAGSLIDDGTLTGKVIGIKDIPKADRPPVLI
PFFAFRIMVGCGLLMLALAWGGIAFYATGRLERARWLQWAIFLSFPLGFVATLTGWFTAEVGRQPWTVYGQLRTADAATP
FLTSPQVATSLAVFGAVYALIFAAGTVYIYRMLRAGILPTPAHVGSAANPKRPLAVPGNSPGTPSSNPAE
>Mature_470_residues
MDISALMLSRIQFAFTVSFHIIFPAFTVGLAAWLAFLQARAMISGEPVYDRLFDFWLKIFAVAFGLGVVSGIVMAFQFGT
NWSELARRTGPIQGPLLGYESFTAFALEASFFGVLMFGRRRVPRWFYLFACLMVCLGTSLSSFWILVNNSWMQYPTGFAL
RPDGVFVPTDWWAIIFNGVVWVRFPHMVLAAYVTTSFCVAATGAWSMLRGRDRAEARAMVRMGLGLAAVLVPLQLFFGHL
TGDYVVKHQPSKIAAIEGHWESRAPAGEILFAWPDEAQEKNHFVIALPAPAGSLIDDGTLTGKVIGIKDIPKADRPPVLI
PFFAFRIMVGCGLLMLALAWGGIAFYATGRLERARWLQWAIFLSFPLGFVATLTGWFTAEVGRQPWTVYGQLRTADAATP
FLTSPQVATSLAVFGAVYALIFAAGTVYIYRMLRAGILPTPAHVGSAANPKRPLAVPGNSPGTPSSNPAE

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=313, Percent_Identity=38.3386581469649, Blast_Score=205, Evalue=6e-54,
Organism=Escherichia coli, GI87081779, Length=307, Percent_Identity=37.4592833876222, Blast_Score=194, Evalue=1e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 51517; Mature: 51517

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS00334 MYB_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDISALMLSRIQFAFTVSFHIIFPAFTVGLAAWLAFLQARAMISGEPVYDRLFDFWLKIF
CCHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
AVAFGLGVVSGIVMAFQFGTNWSELARRTGPIQGPLLGYESFTAFALEASFFGVLMFGRR
HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
RVPRWFYLFACLMVCLGTSLSSFWILVNNSWMQYPTGFALRPDGVFVPTDWWAIIFNGVV
CCCHHHHHHHHHHHHHCCCCHHEEEEEECCEECCCCCCEECCCCEEECCCHHHHHHCCCC
WVRFPHMVLAAYVTTSFCVAATGAWSMLRGRDRAEARAMVRMGLGLAAVLVPLQLFFGHL
EEHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TGDYVVKHQPSKIAAIEGHWESRAPAGEILFAWPDEAQEKNHFVIALPAPAGSLIDDGTL
CCCEEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCC
TGKVIGIKDIPKADRPPVLIPFFAFRIMVGCGLLMLALAWGGIAFYATGRLERARWLQWA
CEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHH
IFLSFPLGFVATLTGWFTAEVGRQPWTVYGQLRTADAATPFLTSPQVATSLAVFGAVYAL
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
IFAAGTVYIYRMLRAGILPTPAHVGSAANPKRPLAVPGNSPGTPSSNPAE
HHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MDISALMLSRIQFAFTVSFHIIFPAFTVGLAAWLAFLQARAMISGEPVYDRLFDFWLKIF
CCHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
AVAFGLGVVSGIVMAFQFGTNWSELARRTGPIQGPLLGYESFTAFALEASFFGVLMFGRR
HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
RVPRWFYLFACLMVCLGTSLSSFWILVNNSWMQYPTGFALRPDGVFVPTDWWAIIFNGVV
CCCHHHHHHHHHHHHHCCCCHHEEEEEECCEECCCCCCEECCCCEEECCCHHHHHHCCCC
WVRFPHMVLAAYVTTSFCVAATGAWSMLRGRDRAEARAMVRMGLGLAAVLVPLQLFFGHL
EEHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TGDYVVKHQPSKIAAIEGHWESRAPAGEILFAWPDEAQEKNHFVIALPAPAGSLIDDGTL
CCCEEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCC
TGKVIGIKDIPKADRPPVLIPFFAFRIMVGCGLLMLALAWGGIAFYATGRLERARWLQWA
CEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHH
IFLSFPLGFVATLTGWFTAEVGRQPWTVYGQLRTADAATPFLTSPQVATSLAVFGAVYAL
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
IFAAGTVYIYRMLRAGILPTPAHVGSAANPKRPLAVPGNSPGTPSSNPAE
HHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]