Click here to switch to the map view.

The map label for this gene is cydB [H]

Identifier: 170751243

GI number: 170751243

Start: 5188897

End: 5189883

Strand: Reverse

Name: cydB [H]

Synonym: Mrad2831_4860

Alternate gene names: 170751243

Gene position: 5189883-5188897 (Counterclockwise)

Preceding gene: 170751244

Following gene: 170751242

Centisome position: 85.39

GC content: 71.53

Gene sequence:

>987_bases
GTGATCGAATTCTGGGCCGCCGCCCTCGCCCTCACCCTGATGCTCTACGTGCTGCTCGACGGGTTCGACCTCGGCGTCGG
CATGCTGTTCGGGATCGCCCCGGACGAGACCGCGCGCCGACACATGATGCAGGCGATCGCCCCCGTCTGGGACGGCAACG
AGACCTGGCTGGTGCTCGCCGCCACGATCCTGTTCGGCGCCTTCCCCACGGTCTACGCGCTGCTGCTCTCGGCCTTCTAC
CTGCCGCTCCTCCTGATGCTCGCGGCCCTGATCCTGCGCGGCGTCGCCTTCGAGTTCCGCTACAAGTCCCGGCGGCTGCG
GCGGGTCTGGGACGCGGGCTTCGTCGGCGGCTCCGCCTGCGCGGCCTTCGTGCAGGGCGTGACGGTCGGGGCGCTGGTGC
AGGAGCTGCCGGTGCGCGACGGGCTCTACGCCGGCGGGGCGTTCACGTGGCTCACGCCCTTCTCGCTGCTCTGCGGTCTC
GGCCTGTGCCTCGGCTACGCGCTGCTCGGCGCCGCGTGGCTGTGCGGCAAGACCGAGACCGACGTGCGCGACCTCGGCTT
CCGGCTGCTGCCGCGGCTCCTGCTCGGGGTGCTGGTCTTCCTCGGCGCGGCCTTCGCGTACGCGCTGGCGATGAACCTGC
GGGTGCTGCACCGGTGGCTCGAGCGGCCCGAGATGCTGGTCCTGCCCCTCGTGGGGGCCGCGGCCTGCGCCGGGCTCCTC
TACGCGGCGCGGCGCCGGAACGACGCCCTGCCCTTCCCGCTGGTGGCGCTGATCTTCGCCGCCGCCTTCGCGACGCTCGC
CGCCTCGTTCCTGCCCTACATGGTGCCGTTCAGCGTGACGGTGACCGAGGCGGCGGCGCCGGAGGCGAGCCTGTCCTTCA
TGTTCTGGGGGGCAGGCGTCGTGGTCCTGCCGATCACCCTGATCTACACCCTGGTGGTCTACCGGGTGTTCAAGGGGAAG
GTCGACGTCGCCGAGCACTATGACTGA

Upstream 100 bases:

>100_bases
GCCGGCCCATGTGGGGAGCGCCGCCAACCCCAAGCGGCCGCTCGCCGTGCCGGGCAACAGTCCCGGCACCCCCAGCAGCA
ATCCGGCGGAGTGAGCGGCC

Downstream 100 bases:

>100_bases
GCCCGCGGCCGGGTTCCCGGACCCGCCCCGGCCGGCGGGGCCGCGCGATGGCCGGTGAGGTCGCGCTCCCCGGCGACGCA
CCGGGCCTCCTGCAGCGCGC

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MIEFWAAALALTLMLYVLLDGFDLGVGMLFGIAPDETARRHMMQAIAPVWDGNETWLVLAATILFGAFPTVYALLLSAFY
LPLLLMLAALILRGVAFEFRYKSRRLRRVWDAGFVGGSACAAFVQGVTVGALVQELPVRDGLYAGGAFTWLTPFSLLCGL
GLCLGYALLGAAWLCGKTETDVRDLGFRLLPRLLLGVLVFLGAAFAYALAMNLRVLHRWLERPEMLVLPLVGAAACAGLL
YAARRRNDALPFPLVALIFAAAFATLAASFLPYMVPFSVTVTEAAAPEASLSFMFWGAGVVVLPITLIYTLVVYRVFKGK
VDVAEHYD

Sequences:

>Translated_328_residues
MIEFWAAALALTLMLYVLLDGFDLGVGMLFGIAPDETARRHMMQAIAPVWDGNETWLVLAATILFGAFPTVYALLLSAFY
LPLLLMLAALILRGVAFEFRYKSRRLRRVWDAGFVGGSACAAFVQGVTVGALVQELPVRDGLYAGGAFTWLTPFSLLCGL
GLCLGYALLGAAWLCGKTETDVRDLGFRLLPRLLLGVLVFLGAAFAYALAMNLRVLHRWLERPEMLVLPLVGAAACAGLL
YAARRRNDALPFPLVALIFAAAFATLAASFLPYMVPFSVTVTEAAAPEASLSFMFWGAGVVVLPITLIYTLVVYRVFKGK
VDVAEHYD
>Mature_328_residues
MIEFWAAALALTLMLYVLLDGFDLGVGMLFGIAPDETARRHMMQAIAPVWDGNETWLVLAATILFGAFPTVYALLLSAFY
LPLLLMLAALILRGVAFEFRYKSRRLRRVWDAGFVGGSACAAFVQGVTVGALVQELPVRDGLYAGGAFTWLTPFSLLCGL
GLCLGYALLGAAWLCGKTETDVRDLGFRLLPRLLLGVLVFLGAAFAYALAMNLRVLHRWLERPEMLVLPLVGAAACAGLL
YAARRRNDALPFPLVALIFAAAFATLAASFLPYMVPFSVTVTEAAAPEASLSFMFWGAGVVVLPITLIYTLVVYRVFKGK
VDVAEHYD

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=367, Percent_Identity=31.6076294277929, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1787213, Length=358, Percent_Identity=30.4469273743017, Blast_Score=121, Evalue=6e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 35644; Mature: 35644

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEFWAAALALTLMLYVLLDGFDLGVGMLFGIAPDETARRHMMQAIAPVWDGNETWLVLA
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
ATILFGAFPTVYALLLSAFYLPLLLMLAALILRGVAFEFRYKSRRLRRVWDAGFVGGSAC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
AAFVQGVTVGALVQELPVRDGLYAGGAFTWLTPFSLLCGLGLCLGYALLGAAWLCGKTET
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DVRDLGFRLLPRLLLGVLVFLGAAFAYALAMNLRVLHRWLERPEMLVLPLVGAAACAGLL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHH
YAARRRNDALPFPLVALIFAAAFATLAASFLPYMVPFSVTVTEAAAPEASLSFMFWGAGV
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHCCCCHHHHHHHHCCCH
VVLPITLIYTLVVYRVFKGKVDVAEHYD
HHHHHHHHHHHHHHHHHHCCCCHHHCCC
>Mature Secondary Structure
MIEFWAAALALTLMLYVLLDGFDLGVGMLFGIAPDETARRHMMQAIAPVWDGNETWLVLA
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
ATILFGAFPTVYALLLSAFYLPLLLMLAALILRGVAFEFRYKSRRLRRVWDAGFVGGSAC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
AAFVQGVTVGALVQELPVRDGLYAGGAFTWLTPFSLLCGLGLCLGYALLGAAWLCGKTET
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DVRDLGFRLLPRLLLGVLVFLGAAFAYALAMNLRVLHRWLERPEMLVLPLVGAAACAGLL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHH
YAARRRNDALPFPLVALIFAAAFATLAASFLPYMVPFSVTVTEAAAPEASLSFMFWGAGV
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHCCCCHHHHHHHHCCCH
VVLPITLIYTLVVYRVFKGKVDVAEHYD
HHHHHHHHHHHHHHHHHHCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]