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The map label for this gene is 170748429

Identifier: 170748429

GI number: 170748429

Start: 2136927

End: 2137853

Strand: Reverse

Name: 170748429

Synonym: Mrad2831_2011

Alternate gene names: NA

Gene position: 2137853-2136927 (Counterclockwise)

Preceding gene: 170748434

Following gene: 170748427

Centisome position: 35.17

GC content: 77.02

Gene sequence:

>927_bases
ATGCGCTCAGCCCTCAGCTCAGCCCTCACCCTGACGTTCCTGCTCGCCCTGGCGGGGGCGGCACTCGGCCAGCAGGCGGA
TCCGCCGGGTGCCGCCGGTCCGGATCCGGCCGCGTCCGCCCCCGCGACGGGGCGGTCTCGCCCGGCCCGCCCGCGGGTCC
GCCACGCGCAGGCCCCGAGCCAGCCGATCATGGTCTACGACGCGCGGATCGAGGCCGGCGACCTGCGGATCTCGGGCTCG
GTGCGCAAGCCCGGGGCGATCGTGGTGCTGGACGACGACATCTCGATCCAGGCCGACCGGCGCGGCCGGTTCACCTTCCG
GTTGCCCTACCGGCCCTCGACCTGCGTGGTGACGCTGAAGGCGGAGCCGGACGAGCGCGAGGCGGTGGTGGCGAACTGCG
CGCCCGAGGGGCCGCCCGGACCGCCAGGTCCCCAGGGTGCGGCGGGACCGGCCGGCGAGACGGGCCCCAAGGGTGAGATG
GGCCCCAAGGGTGAGACCGGTCCCAAGGGCGAGCAGGGGCCCAGGGGGGATCAGGGGATCAAGGGCGAGCAGGGCCCTCA
AGGCGAGCGGGGCCTCAAGGGCGATACGGGTCCCCAGGGCGAGCCCGGCCCGAGAGGAGAGCCCGGTCCCGCGGGCGCGG
TCGGCCCACAGGGCGCACCGGGTCCGAAGGGCGACGCGGGCGCCGCGGGCCCACGGGGTCCGGTCGGACCGCAGGGCGGC
CCGGGTCCGAAGGGCGAGGCCGCCGCGGCCAGCCTGCGGCCCGTGCGCAAATCCGACTGCCCGGGGGGCTGCACGATCAC
CTGCGGGACCGGCGAGATGCTGGTCACGGCCCACTGCCTCAAGGGCGGCGCGCCGGTCTACGAGGGGGAGGGCGCCAGCT
GCCCGGCGGAGGCGTCCGGCATCGTCGGGTTCTGCACGCGGCCCTGA

Upstream 100 bases:

>100_bases
CGACAGCCACCTCTGGGTTCGAGGTCACGGTTGACCGCAATCGCAGGGCGAGACCAATGTCCCGACGCCGCGCGCGTGAC
GCGGCCGGACCGGACCGCGC

Downstream 100 bases:

>100_bases
GGCGGGCAACCCTGATCCCGGCGGCTCAGCCGCCGGTCTCGCGCAGCCAGTCGAGCATCCCGGCGGCGGCCGCCCGGCCG
CCCGCGAAGGCGCCCTGGAG

Product: triple helix repeat-containing collagen

Products: NA

Alternate protein names: Collagen Triple Helix Repeat-Containing Protein; Collagen Triple Helix Repeat

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MRSALSSALTLTFLLALAGAALGQQADPPGAAGPDPAASAPATGRSRPARPRVRHAQAPSQPIMVYDARIEAGDLRISGS
VRKPGAIVVLDDDISIQADRRGRFTFRLPYRPSTCVVTLKAEPDEREAVVANCAPEGPPGPPGPQGAAGPAGETGPKGEM
GPKGETGPKGEQGPRGDQGIKGEQGPQGERGLKGDTGPQGEPGPRGEPGPAGAVGPQGAPGPKGDAGAAGPRGPVGPQGG
PGPKGEAAAASLRPVRKSDCPGGCTITCGTGEMLVTAHCLKGGAPVYEGEGASCPAEASGIVGFCTRP

Sequences:

>Translated_308_residues
MRSALSSALTLTFLLALAGAALGQQADPPGAAGPDPAASAPATGRSRPARPRVRHAQAPSQPIMVYDARIEAGDLRISGS
VRKPGAIVVLDDDISIQADRRGRFTFRLPYRPSTCVVTLKAEPDEREAVVANCAPEGPPGPPGPQGAAGPAGETGPKGEM
GPKGETGPKGEQGPRGDQGIKGEQGPQGERGLKGDTGPQGEPGPRGEPGPAGAVGPQGAPGPKGDAGAAGPRGPVGPQGG
PGPKGEAAAASLRPVRKSDCPGGCTITCGTGEMLVTAHCLKGGAPVYEGEGASCPAEASGIVGFCTRP
>Mature_308_residues
MRSALSSALTLTFLLALAGAALGQQADPPGAAGPDPAASAPATGRSRPARPRVRHAQAPSQPIMVYDARIEAGDLRISGS
VRKPGAIVVLDDDISIQADRRGRFTFRLPYRPSTCVVTLKAEPDEREAVVANCAPEGPPGPPGPQGAAGPAGETGPKGEM
GPKGETGPKGEQGPRGDQGIKGEQGPQGERGLKGDTGPQGEPGPRGEPGPAGAVGPQGAPGPKGDAGAAGPRGPVGPQGG
PGPKGEAAAASLRPVRKSDCPGGCTITCGTGEMLVTAHCLKGGAPVYEGEGASCPAEASGIVGFCTRP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI183583553, Length=134, Percent_Identity=43.2835820895522, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI65301115, Length=111, Percent_Identity=50.4504504504504, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI56847616, Length=111, Percent_Identity=50.4504504504504, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI110735435, Length=117, Percent_Identity=49.5726495726496, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI5803080, Length=121, Percent_Identity=49.5867768595041, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI122937273, Length=124, Percent_Identity=45.9677419354839, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI156616290, Length=107, Percent_Identity=44.8598130841121, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI48762934, Length=117, Percent_Identity=52.1367521367521, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI18105016, Length=97, Percent_Identity=47.4226804123711, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI18105018, Length=99, Percent_Identity=46.4646464646465, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI115392133, Length=122, Percent_Identity=47.5409836065574, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI145701009, Length=97, Percent_Identity=47.4226804123711, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI73486666, Length=102, Percent_Identity=51.9607843137255, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI115527062, Length=108, Percent_Identity=47.2222222222222, Blast_Score=65, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17569903, Length=119, Percent_Identity=45.3781512605042, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30417; Mature: 30417

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSALSSALTLTFLLALAGAALGQQADPPGAAGPDPAASAPATGRSRPARPRVRHAQAPS
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC
QPIMVYDARIEAGDLRISGSVRKPGAIVVLDDDISIQADRRGRFTFRLPYRPSTCVVTLK
CCEEEEEEEECCCCEEEECCCCCCCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEE
AEPDEREAVVANCAPEGPPGPPGPQGAAGPAGETGPKGEMGPKGETGPKGEQGPRGDQGI
CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
KGEQGPQGERGLKGDTGPQGEPGPRGEPGPAGAVGPQGAPGPKGDAGAAGPRGPVGPQGG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PGPKGEAAAASLRPVRKSDCPGGCTITCGTGEMLVTAHCLKGGAPVYEGEGASCPAEASG
CCCCCCHHHHHHCCCHHCCCCCCCEEEECCCCEEEEEHHHCCCCCEECCCCCCCCCCCCC
IVGFCTRP
EEEEECCC
>Mature Secondary Structure
MRSALSSALTLTFLLALAGAALGQQADPPGAAGPDPAASAPATGRSRPARPRVRHAQAPS
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC
QPIMVYDARIEAGDLRISGSVRKPGAIVVLDDDISIQADRRGRFTFRLPYRPSTCVVTLK
CCEEEEEEEECCCCEEEECCCCCCCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEE
AEPDEREAVVANCAPEGPPGPPGPQGAAGPAGETGPKGEMGPKGETGPKGEQGPRGDQGI
CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
KGEQGPQGERGLKGDTGPQGEPGPRGEPGPAGAVGPQGAPGPKGDAGAAGPRGPVGPQGG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PGPKGEAAAASLRPVRKSDCPGGCTITCGTGEMLVTAHCLKGGAPVYEGEGASCPAEASG
CCCCCCHHHHHHCCCHHCCCCCCCEEEECCCCEEEEEHHHCCCCCEECCCCCCCCCCCCC
IVGFCTRP
EEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA