BacMap

Definition	Methylobacterium radiotolerans JCM 2831 chromosome, complete genome.
Accession	NC_010505
Length	6,077,833

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The map label for this gene is yxjF [H]

Identifier: 170747050

GI number: 170747050

Start: 660630

End: 661379

Strand: Reverse

Name: yxjF [H]

Synonym: Mrad2831_0616

Alternate gene names: 170747050

Gene position: 661379-660630 (Counterclockwise)

Preceding gene: 170747056

Following gene: 170747049

Centisome position: 10.88

GC content: 70.4

Gene sequence:

>750_bases
ATGTCGGGGCTTGAGCGGATCGCGATCGTGACCGGGGCCGGGACGGGTGTCGGCAAGGCCGCCGCCCTGGCGCTCGCCGG
GGCCGGATGGCGCGTCGTCCTCTCCGGGCGGCGTCAGGCCCCCCTCGACGAGGTCAGCGCGCAGATCGGCCACGGGGCCC
TGGCGGTCCCCACCGACGTGACCGATCCCGACTCGATCGCCGCCCTGTTCGCGCGCACCAAGGCGGAGTTCGGCCGTCTC
GACCTGCTGTTCAACAATGCCGGGATCGGCGCTCCGGCGGTCCCCCTTGAGGACCTGCCCCTCGAGACTTGGCGGCAGGT
GGTCGACACCAACCTCACGGCGCTGTTCCTGTGCACGCAGCACGCCTTCCGGATCATGCGCGACCAGGATCCCCGGGGCG
GCCGGATCATCAACAACGGCTCGATCTCGGCCCACGCGCCCCGCCCGAACTCCATCGCCTACACGGCGACCAAGCACGCC
GTCACCGGGCTGACCAAAGCGACCTCCCTCGACGGGCGGGCCTACGACATCGCCTGCGGCCAGATCGATATCGGTAACGC
CGACACGCCCATGGGCGGCAAGATGAAGGCCGGCGTCCCGCAGGCGGACGGGTCCCTGCGGGCCGAAGCGGTGATGGATC
CGGACCATGTCGGTCAGGCCGTGCTCTCCATGGCGAGCCTCCCGCTGGAGGCCAACGTGCAGTTCATGACCATCATGGCC
ACCAAGATGCCGTTCGTCGGCCGCGGCTGA

Upstream 100 bases:

>100_bases
CGTACGCCCCGTGACCGCGGCCCGCATCTGAAACGCCGACGCCTTCGCGCCGCGGCGGCCATCCGCTACAGGCGGTGCAA
CACCGGAACCGGAGGAACGC

Downstream 100 bases:

>100_bases
CACGACGCGGTTCTCGGGTCCGCGCAGCGACGCGCGCAGACTCCGCCCGACGAGACAAGGCTCGACACAGCCCACCCCCG
ATCCGATCGCGCCGAGCGGC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MSGLERIAIVTGAGTGVGKAAALALAGAGWRVVLSGRRQAPLDEVSAQIGHGALAVPTDVTDPDSIAALFARTKAEFGRL
DLLFNNAGIGAPAVPLEDLPLETWRQVVDTNLTALFLCTQHAFRIMRDQDPRGGRIINNGSISAHAPRPNSIAYTATKHA
VTGLTKATSLDGRAYDIACGQIDIGNADTPMGGKMKAGVPQADGSLRAEAVMDPDHVGQAVLSMASLPLEANVQFMTIMA
TKMPFVGRG

Sequences:

>Translated_249_residues
MSGLERIAIVTGAGTGVGKAAALALAGAGWRVVLSGRRQAPLDEVSAQIGHGALAVPTDVTDPDSIAALFARTKAEFGRL
DLLFNNAGIGAPAVPLEDLPLETWRQVVDTNLTALFLCTQHAFRIMRDQDPRGGRIINNGSISAHAPRPNSIAYTATKHA
VTGLTKATSLDGRAYDIACGQIDIGNADTPMGGKMKAGVPQADGSLRAEAVMDPDHVGQAVLSMASLPLEANVQFMTIMA
TKMPFVGRG
>Mature_248_residues
SGLERIAIVTGAGTGVGKAAALALAGAGWRVVLSGRRQAPLDEVSAQIGHGALAVPTDVTDPDSIAALFARTKAEFGRLD
LLFNNAGIGAPAVPLEDLPLETWRQVVDTNLTALFLCTQHAFRIMRDQDPRGGRIINNGSISAHAPRPNSIAYTATKHAV
TGLTKATSLDGRAYDIACGQIDIGNADTPMGGKMKAGVPQADGSLRAEAVMDPDHVGQAVLSMASLPLEANVQFMTIMAT
KMPFVGRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=241, Percent_Identity=29.8755186721992, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI59889578, Length=217, Percent_Identity=30.4147465437788, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI31542939, Length=173, Percent_Identity=30.0578034682081, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI7706318, Length=165, Percent_Identity=30.9090909090909, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI224922801, Length=186, Percent_Identity=30.1075268817204, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI20149619, Length=234, Percent_Identity=28.6324786324786, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI83715985, Length=169, Percent_Identity=30.7692307692308, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI4758504, Length=169, Percent_Identity=30.7692307692308, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI4504505, Length=246, Percent_Identity=30.8943089430894, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI32483357, Length=169, Percent_Identity=29.585798816568, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1788459, Length=208, Percent_Identity=34.6153846153846, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1787335, Length=162, Percent_Identity=33.3333333333333, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1787820, Length=249, Percent_Identity=27.710843373494, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789057, Length=242, Percent_Identity=28.9256198347107, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI2367175, Length=236, Percent_Identity=29.2372881355932, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI87082160, Length=178, Percent_Identity=33.7078651685393, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789208, Length=179, Percent_Identity=32.4022346368715, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1789378, Length=210, Percent_Identity=31.9047619047619, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786812, Length=185, Percent_Identity=34.0540540540541, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790717, Length=186, Percent_Identity=29.5698924731183, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87082100, Length=190, Percent_Identity=31.5789473684211, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787526, Length=168, Percent_Identity=27.9761904761905, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787905, Length=136, Percent_Identity=33.0882352941176, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17538182, Length=223, Percent_Identity=31.8385650224215, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI71994604, Length=172, Percent_Identity=32.5581395348837, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17555706, Length=225, Percent_Identity=28.8888888888889, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17560150, Length=204, Percent_Identity=28.921568627451, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI25147288, Length=190, Percent_Identity=32.1052631578947, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17562908, Length=210, Percent_Identity=29.5238095238095, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17559104, Length=208, Percent_Identity=28.8461538461538, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71994600, Length=173, Percent_Identity=31.2138728323699, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=149, Percent_Identity=29.5302013422819, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17555612, Length=257, Percent_Identity=28.0155642023346, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=179, Percent_Identity=30.1675977653631, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=169, Percent_Identity=29.585798816568, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17562906, Length=208, Percent_Identity=27.4038461538462, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI193204405, Length=201, Percent_Identity=28.3582089552239, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17568967, Length=188, Percent_Identity=32.9787234042553, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=178, Percent_Identity=29.7752808988764, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17562990, Length=171, Percent_Identity=29.2397660818713, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17562904, Length=205, Percent_Identity=25.8536585365854, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17531453, Length=179, Percent_Identity=29.608938547486, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=192, Percent_Identity=31.25, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6323882, Length=169, Percent_Identity=30.7692307692308, Blast_Score=72, Evalue=7e-14,
Organism=Saccharomyces cerevisiae, GI6322067, Length=179, Percent_Identity=26.8156424581006, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI116007236, Length=252, Percent_Identity=29.3650793650794, Blast_Score=92, Evalue=2e-19,
Organism=Drosophila melanogaster, GI116007238, Length=180, Percent_Identity=32.7777777777778, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI17737361, Length=223, Percent_Identity=30.0448430493274, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI281364494, Length=243, Percent_Identity=27.9835390946502, Blast_Score=80, Evalue=9e-16,
Organism=Drosophila melanogaster, GI116007234, Length=253, Percent_Identity=29.2490118577075, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24641232, Length=246, Percent_Identity=29.6747967479675, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI21357041, Length=171, Percent_Identity=30.4093567251462, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI18859837, Length=194, Percent_Identity=34.020618556701, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24580925, Length=182, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI21355319, Length=169, Percent_Identity=29.585798816568, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI23397609, Length=174, Percent_Identity=34.4827586206897, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI28571387, Length=251, Percent_Identity=28.6852589641434, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI28571526, Length=172, Percent_Identity=30.8139534883721, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24648944, Length=167, Percent_Identity=32.9341317365269, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24644339, Length=171, Percent_Identity=28.0701754385965, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI116007232, Length=181, Percent_Identity=32.0441988950276, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24639444, Length=188, Percent_Identity=30.3191489361702, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24641388, Length=180, Percent_Identity=31.6666666666667, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI281364892, Length=172, Percent_Identity=31.3953488372093, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24663911, Length=244, Percent_Identity=25.4098360655738, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24584752, Length=174, Percent_Identity=30.4597701149425, Blast_Score=64, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011294
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25908; Mature: 25777

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGLERIAIVTGAGTGVGKAAALALAGAGWRVVLSGRRQAPLDEVSAQIGHGALAVPTDV
CCCCCEEEEEEECCCCCCHHHHHEECCCCEEEEECCCCCCCHHHHHHHHCCCEEECCCCC
TDPDSIAALFARTKAEFGRLDLLFNNAGIGAPAVPLEDLPLETWRQVVDTNLTALFLCTQ
CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEHHHH
HAFRIMRDQDPRGGRIINNGSISAHAPRPNSIAYTATKHAVTGLTKATSLDGRAYDIACG
HHHHHHCCCCCCCCEEEECCCEEECCCCCCCEEEEEHHHHHHHHHHHCCCCCCEEEEEEC
QIDIGNADTPMGGKMKAGVPQADGSLRAEAVMDPDHVGQAVLSMASLPLEANVQFMTIMA
EEECCCCCCCCCCCEECCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCEEEEEEEE
TKMPFVGRG
ECCCCCCCC
>Mature Secondary Structure 
SGLERIAIVTGAGTGVGKAAALALAGAGWRVVLSGRRQAPLDEVSAQIGHGALAVPTDV
CCCCEEEEEEECCCCCCHHHHHEECCCCEEEEECCCCCCCHHHHHHHHCCCEEECCCCC
TDPDSIAALFARTKAEFGRLDLLFNNAGIGAPAVPLEDLPLETWRQVVDTNLTALFLCTQ
CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEHHHH
HAFRIMRDQDPRGGRIINNGSISAHAPRPNSIAYTATKHAVTGLTKATSLDGRAYDIACG
HHHHHHCCCCCCCCEEEECCCEEECCCCCCCEEEEEHHHHHHHHHHHCCCCCCEEEEEEC
QIDIGNADTPMGGKMKAGVPQADGSLRAEAVMDPDHVGQAVLSMASLPLEANVQFMTIMA
EEECCCCCCCCCCCEECCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCEEEEEEEE
TKMPFVGRG
ECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]