Click here to switch to the map view.

The map label for this gene is rnfB [H]

Identifier: 170682878

GI number: 170682878

Start: 1555736

End: 1556314

Strand: Reverse

Name: rnfB [H]

Synonym: EcSMS35_1571

Alternate gene names: 170682878

Gene position: 1556314-1555736 (Counterclockwise)

Preceding gene: 170680993

Following gene: 170682353

Centisome position: 30.71

GC content: 54.4

Gene sequence:

>579_bases
ATGAATGCTATCTGGATTGCCGTTGCCGCCGTGAGCCTGCTGGGCCTGGCGTTTGGCGCCATTCTGGGTTATGCCTCCCG
CCGTTTTGCGGTGGAAGACGATCCGGTCGTTGAGAAAATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTT
ATCCCGGCTGTCGCCCCTACGCGGAAGCCATCAGCTGTAACGGTGAAAAAATTAACCGCTGCGCCCCAGGTGGCGAAGCT
GTGATGCTAAAAATTGCTGAGTTGCTTAATGTCGAGCCACAGCCGCTGGATGGCGAAGCGCAAGAGCTAACGCCTGCGCG
GATGGTGGCGGTTATTGATGAAAATAACTGTATTGGCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTG
GCGCTACCCGCGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCAC
TGCATCTCGTTGCAACCGGTTGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCC
CGTGGAACACCATGCTTAA

Upstream 100 bases:

>100_bases
CTGATGTCCCGGCACCTTTTCGCGGTAATGCCATTGCGTTAATTACCGCAGGTCTTATGTCTCTGGCCTTTATGGGCTTT
AGTGGTTTGGTGAAGTTGTA

Downstream 100 bases:

>100_bases
GTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCA
ACGGTACGCCCCTGCGCCAG

Product: electron transport complex protein RnfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MNAIWIAVAAVSLLGLAFGAILGYASRRFAVEDDPVVEKIDEILPQSQCGQCGYPGCRPYAEAISCNGEKINRCAPGGEA
VMLKIAELLNVEPQPLDGEAQELTPARMVAVIDENNCIGCTKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTH
CISLQPVAETPDSWKWDLNTIPVRIIPVEHHA

Sequences:

>Translated_192_residues
MNAIWIAVAAVSLLGLAFGAILGYASRRFAVEDDPVVEKIDEILPQSQCGQCGYPGCRPYAEAISCNGEKINRCAPGGEA
VMLKIAELLNVEPQPLDGEAQELTPARMVAVIDENNCIGCTKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTH
CISLQPVAETPDSWKWDLNTIPVRIIPVEHHA
>Mature_192_residues
MNAIWIAVAAVSLLGLAFGAILGYASRRFAVEDDPVVEKIDEILPQSQCGQCGYPGCRPYAEAISCNGEKINRCAPGGEA
VMLKIAELLNVEPQPLDGEAQELTPARMVAVIDENNCIGCTKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTH
CISLQPVAETPDSWKWDLNTIPVRIIPVEHHA

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=192, Percent_Identity=99.4791666666667, Blast_Score=391, Evalue=1e-110,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 20544; Mature: 20544

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
9.9 %Cys+Met (Translated Protein)
7.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
9.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAIWIAVAAVSLLGLAFGAILGYASRRFAVEDDPVVEKIDEILPQSQCGQCGYPGCRPY
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHH
AEAISCNGEKINRCAPGGEAVMLKIAELLNVEPQPLDGEAQELTPARMVAVIDENNCIGC
HHHHCCCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCCHHHEEEEECCCCCCCH
TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQPVAETPDSWKWDLNT
HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCC
IPVRIIPVEHHA
CCEEEEECCCCC
>Mature Secondary Structure
MNAIWIAVAAVSLLGLAFGAILGYASRRFAVEDDPVVEKIDEILPQSQCGQCGYPGCRPY
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHH
AEAISCNGEKINRCAPGGEAVMLKIAELLNVEPQPLDGEAQELTPARMVAVIDENNCIGC
HHHHCCCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCCHHHEEEEECCCCCCCH
TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQPVAETPDSWKWDLNT
HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCC
IPVRIIPVEHHA
CCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA