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The map label for this gene is rnfC [H]

Identifier: 170682353

GI number: 170682353

Start: 1553713

End: 1555743

Strand: Reverse

Name: rnfC [H]

Synonym: EcSMS35_1570

Alternate gene names: 170682353

Gene position: 1555743-1553713 (Counterclockwise)

Preceding gene: 170682878

Following gene: 170682943

Centisome position: 30.7

GC content: 55.05

Gene sequence:

>2031_bases
ATGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAAC
CCAGTCCAACGGTACGCCCCTGCGCCAGGTACCACTGGCGCAGCGTTTTGTCATACCACTGAAACAACATATTGGCGCTG
AAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTACTGCGCGGCCAGCCGCTTACCCGTGGACGCGGCAAAATGCTGCCG
GTTCACGCGCCCACCTCGGGTACCGTTACGGCTATTGCGCCCCACTCTACGGCTCATCCTTCAGCTTTAGCTGAATTAAG
CGTGATTATTGATGCCGATGGCGAAGACTGCTGGATCCCGCGCGACGGCTGGGACGATTATCGCTCTCGCAGTCGCGAAG
AGTTAATTGAGCGCATTCATCAGTTTGGTGTTGCCGGGCTGGGTGGTGCGGGATTCCCGACAGGCGTTAAATTGCAGGGT
GGCGGAGATAAGATTGAAACGTTGATTATCAACGCTGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCA
GGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTG
AAGATAACAAACCGCAGGCGATTTCCATGCTGCGCGCGGTGCTGGCGGACTCTCACGATATTTCTCTGCGGGTGATTCCA
ACCAAATATCCTTCTGGCGGTGCTAAACAATTAACCTACATTCTGACCGGGAAGCAGGTTCCACATGGCGGGCGTTCATC
CGATATCGGCGTATTAATGCAAAACGTCGGCACTGCTTATGCAGTGAAACGTGCCGTTATTGATGGCGAGCCGATTACCG
AGCGTGTCGTAACCCTGACTGGCGAAGCAATCGCTCGCCCGGGCAACGTCTGGGCACGGCTGGGGACGCCCGTGCGTCAT
TTATTGAATGACGCCGGATTCTGCCCCTCTGCCGATCAAATGGTGATTATGGGCGGCCCGTTAATGGGCTTTACCTTGCC
ATGGCTGGATGTCCCGGTCGTAAAGATTACCAACTGTCTGTTGGCTCCCTCTGCCAATGAGCTTGGCGAACCACAGGAAG
AACAAAATTGCATCCGTTGTAGTGCCTGTGCTGACGCCTGCCCTGCGGATCTTTTGCCGCAACAGCTATACTGGTTCAGC
AAAGGTCAGCAACACGATAAAGCCACCACGCATAACATTGCCGACTGCATTGAATGTGGAGCTTGCGCGTGGGTTTGCCC
GAGCAATATTCCCCTGGTGCAATATTTCCGCCAGGAAAAAGCTGAAATTGCGGCTATTCGTCAGGAAGAAAAGCGCGCCG
CAGAAGCCAAAGCGCGTTTCGAAGCGCGCCAGGCTCGTCTGGAGCGCGAAAAAGCGGCTCGCCTTGAACGACATAAGAGC
GCAGCCGTTCAACCTGCAGCCAAAGATAAAGATGCGATTGCTGCCGCTCTGGCGCGGGTGAAAGAGAAACAGGCCCAGGC
TACACAGCCTATTGTGATTAAAGCGGGCGAACGCCCGGATAACAGTGCAATTATTGCAGCACGGGAAGCCCGTAAAGCGC
AAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCTGCAACCGTTGCTGATCCACGTAAAACTGCAGTTGAA
GCGGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCG
CAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAACGCAGAGCCAGAAC
AACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCGCAAACTGGAACAGCAACAGGCT
AATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGTTCAGGCCAAAAAAGC
CGCCCAGCAAAAGGTTGTAAACGAGGACTAA

Upstream 100 bases:

>100_bases
CCGACGCACTGCATCTCGTTGCAACCGGTTGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCG
TATCATTCCCGTGGAACACC

Downstream 100 bases:

>100_bases
ATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAACCAGCGCCAGACATCGCGCATTATGCTGTTGGTGTTGCTCGC
AGCCGTGCCAGGAATCGCAG

Product: electron transport complex protein RnfC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 676; Mature: 676

Protein sequence:

>676_residues
MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVSVGDKVLRGQPLTRGRGKMLP
VHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIPRDGWDDYRSRSREELIERIHQFGVAGLGGAGFPTGVKLQG
GGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSHDISLRVIP
TKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLTGEAIARPGNVWARLGTPVRH
LLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSANELGEPQEEQNCIRCSACADACPADLLPQQLYWFS
KGQQHDKATTHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKS
AAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQAELQQTNDAATVADPRKTAVE
AAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQA
NAEPEEQVDPRKAAVAAAIARVQAKKAAQQKVVNED

Sequences:

>Translated_676_residues
MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVSVGDKVLRGQPLTRGRGKMLP
VHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIPRDGWDDYRSRSREELIERIHQFGVAGLGGAGFPTGVKLQG
GGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSHDISLRVIP
TKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLTGEAIARPGNVWARLGTPVRH
LLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSANELGEPQEEQNCIRCSACADACPADLLPQQLYWFS
KGQQHDKATTHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKS
AAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQAELQQTNDAATVADPRKTAVE
AAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQA
NAEPEEQVDPRKAAVAAAIARVQAKKAAQQKVVNED
>Mature_676_residues
MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVSVGDKVLRGQPLTRGRGKMLP
VHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIPRDGWDDYRSRSREELIERIHQFGVAGLGGAGFPTGVKLQG
GGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSHDISLRVIP
TKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLTGEAIARPGNVWARLGTPVRH
LLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSANELGEPQEEQNCIRCSACADACPADLLPQQLYWFS
KGQQHDKATTHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKS
AAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQAELQQTNDAATVADPRKTAVE
AAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQA
NAEPEEQVDPRKAAVAAAIARVQAKKAAQQKVVNED

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=652, Percent_Identity=99.079754601227, Blast_Score=1219, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 73301; Mature: 73301

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVS
CCHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCCEEHH
VGDKVLRGQPLTRGRGKMLPVHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIP
HCCHHHCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCHHHEEEEEEEECCCCCEECC
RDGWDDYRSRSREELIERIHQFGVAGLGGAGFPTGVKLQGGGDKIETLIINAAECEPYIT
CCCCHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEEEEHHCCCCEEC
ADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSHDISLRVIP
CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEE
TKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLT
CCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHCC
GEAIARPGNVWARLGTPVRHLLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCL
CHHHCCCCHHHHHCCHHHHHHHHHCCCCCCCCCEEEECCCHHHCCCCCCCCCHHHHHHHH
LAPSANELGEPQEEQNCIRCSACADACPADLLPQQLYWFSKGQQHDKATTHNIADCIECG
CCCCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
ACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKS
CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQA
HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEHHHHHHHHHHHHH
ELQQTNDAATVADPRKTAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKA
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHH
RKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQANAEPEEQVDPRKAAVAAAIA
HHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHH
RVQAKKAAQQKVVNED
HHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELCVS
CCHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCCEEHH
VGDKVLRGQPLTRGRGKMLPVHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDCWIP
HCCHHHCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCHHHEEEEEEEECCCCCEECC
RDGWDDYRSRSREELIERIHQFGVAGLGGAGFPTGVKLQGGGDKIETLIINAAECEPYIT
CCCCHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEEEEHHCCCCEEC
ADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSHDISLRVIP
CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEE
TKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITERVVTLT
CCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHCC
GEAIARPGNVWARLGTPVRHLLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCL
CHHHCCCCHHHHHCCHHHHHHHHHCCCCCCCCCEEEECCCHHHCCCCCCCCCHHHHHHHH
LAPSANELGEPQEEQNCIRCSACADACPADLLPQQLYWFSKGQQHDKATTHNIADCIECG
CCCCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
ACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLERHKS
CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVQPAAKDKDAIAAALARVKEKQAQATQPIVIKAGERPDNSAIIAAREARKAQARAKQA
HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEHHHHHHHHHHHHH
ELQQTNDAATVADPRKTAVEAAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKA
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHH
RKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQANAEPEEQVDPRKAAVAAAIA
HHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHH
RVQAKKAAQQKVVNED
HHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA