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The map label for this gene is ydgA [H]

Identifier: 170682142

GI number: 170682142

Start: 1571129

End: 1572637

Strand: Reverse

Name: ydgA [H]

Synonym: EcSMS35_1585

Alternate gene names: 170682142

Gene position: 1572637-1571129 (Counterclockwise)

Preceding gene: 170682319

Following gene: 170681681

Centisome position: 31.03

GC content: 49.37

Gene sequence:

>1509_bases
ATGAATAAATCGCTGGTAGCGGTAGGCGTCATTGTTGCGCTAGGCGTAGTCTGGACAGGCGGCGCATGGTATACAGGCAA
GAAGATTGAAACCCATCTCGAAGACATGGTCGCGCAGGCGAACGCGCAACTCAAACTGACCGCTCCTGAATCCAACCTGG
AAGTGAGTTATCAAAACTATCATCGCGGCGTATTCAGCAGTCAGCTGCAACTGTTGGTGAAACCCATTGCCGGGAAAGAA
AATCCGTGGATTAAAAGCGGTCAGAGCGTCATCTTCAACGAATCGGTTGATCATGGTCCCTTCCCCCTTGCCCAGCTAAA
AAAACTGAACCTGCTCCCGTCGATGGCATCAATTCAAACCACGCTGGTTAATAACGAAGTTAGCAAGCCACTGTTTGATA
TGGCAAAAGGTGAAACGCCTTTTGAGATTAACTCCCGCATTGGTTACAGCGGAGATTCCAGTTCCGATATTTCGCTCAAG
CCGCTGAATTACGAGCAAAAGGATGAAAAAGTCGCCTTTAGCGGCGGCGAGTTCCAGTTAAATGCGGACAGAGACGGCAA
AGCTATCTCCCTTTCCGGAGAGGCGCAAAGTGGTCGGATAGACGCAGTTAACGAATACAACCAGAAAGTGCAGTTGACCT
TTAATAATCTGAAAACCGACGGTTCCAGCACGCTGGCAAGTTTTGGTGAGCGCGTAGGAAACCAAAAACTGTCACTGGAA
AAAATGACCATTTCAGTGGAAGGCAAAGAACTGGCACTGCTGGAAGGCATGGAGATCAGCGGTAAATCGGATCTGGTCAA
TGACGGTAAAACGATCAATAGCCAACTGGATTACTCGCTAAACAGCCTGAAGGTACAGAATCAGGATCTGGGCAGTGGCA
AGCTGACTTTAAAAGTCGGCCAGATTGATGGTGAAGCCTGGCATCAGTTTAGCCAGCAATATAACGCGCAAACTCAGGCG
CTGCTGGCACAGCCAGAAATTGCCAACAATCCCGAACTTTATCAGGAGAAAGTGACGGAAGCCTTCTTTAGCGCCCTGCC
GCTGATGTTGAAAGGCGATCCGGTGATTACTATCGCGCCGCTAAGCTGGAAAAACAGTCAGGGTGAAAGTGCGCTGAATC
TGTCGCTGTTCCTGAAAGATCCGGCAACGACTAAAGAAGCGCCGCAAACGCTGACGCAGGAAGTAGATCGTTCGGTTAAA
TCTCTGGATGCGAAACTGACCATTCCGGTGGATATGGCAACTGAGTTGATGACTCAGGTAGCGAAGCTGGAAGGTTATCA
GGAAGATCAAGCGAAAAAACTGGCGAAACAGCAAGTTGAAGGTGCATCAGCAATGGGGCAGATGTTCCGTCTGACCACCT
TGCAGGACAATACCATCACCACCAGCCTGCAATATGCTAACGGTCAGATAACGTTAAACGGGCAGAAAATGCCACTGGAA
GATTTCGTGGGTATGTTTGCGATGCCGACATTAAACGTTCCGGCTGTACCCGCTATTCCGCAGCAGTAA

Upstream 100 bases:

>100_bases
GAGCTTACTGAAAAAATTAACATCTCTTGCTAAGCTTATTAAAGGCTTATAACACCTTCAGGCGGCCAGTCCGCCTGATT
TCATTTTATGGATAATCATT

Downstream 100 bases:

>100_bases
TTCACAGCCAAAACGCCGGAGATTTTTCTCTCCGGCGTTTTTTCTTACTTCAGCATAAAGTCATACTGAATACTCATTTT
CACATCCCAGTAATTCAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 502; Mature: 502

Protein sequence:

>502_residues
MNKSLVAVGVIVALGVVWTGGAWYTGKKIETHLEDMVAQANAQLKLTAPESNLEVSYQNYHRGVFSSQLQLLVKPIAGKE
NPWIKSGQSVIFNESVDHGPFPLAQLKKLNLLPSMASIQTTLVNNEVSKPLFDMAKGETPFEINSRIGYSGDSSSDISLK
PLNYEQKDEKVAFSGGEFQLNADRDGKAISLSGEAQSGRIDAVNEYNQKVQLTFNNLKTDGSSTLASFGERVGNQKLSLE
KMTISVEGKELALLEGMEISGKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYNAQTQA
LLAQPEIANNPELYQEKVTEAFFSALPLMLKGDPVITIAPLSWKNSQGESALNLSLFLKDPATTKEAPQTLTQEVDRSVK
SLDAKLTIPVDMATELMTQVAKLEGYQEDQAKKLAKQQVEGASAMGQMFRLTTLQDNTITTSLQYANGQITLNGQKMPLE
DFVGMFAMPTLNVPAVPAIPQQ

Sequences:

>Translated_502_residues
MNKSLVAVGVIVALGVVWTGGAWYTGKKIETHLEDMVAQANAQLKLTAPESNLEVSYQNYHRGVFSSQLQLLVKPIAGKE
NPWIKSGQSVIFNESVDHGPFPLAQLKKLNLLPSMASIQTTLVNNEVSKPLFDMAKGETPFEINSRIGYSGDSSSDISLK
PLNYEQKDEKVAFSGGEFQLNADRDGKAISLSGEAQSGRIDAVNEYNQKVQLTFNNLKTDGSSTLASFGERVGNQKLSLE
KMTISVEGKELALLEGMEISGKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYNAQTQA
LLAQPEIANNPELYQEKVTEAFFSALPLMLKGDPVITIAPLSWKNSQGESALNLSLFLKDPATTKEAPQTLTQEVDRSVK
SLDAKLTIPVDMATELMTQVAKLEGYQEDQAKKLAKQQVEGASAMGQMFRLTTLQDNTITTSLQYANGQITLNGQKMPLE
DFVGMFAMPTLNVPAVPAIPQQ
>Mature_502_residues
MNKSLVAVGVIVALGVVWTGGAWYTGKKIETHLEDMVAQANAQLKLTAPESNLEVSYQNYHRGVFSSQLQLLVKPIAGKE
NPWIKSGQSVIFNESVDHGPFPLAQLKKLNLLPSMASIQTTLVNNEVSKPLFDMAKGETPFEINSRIGYSGDSSSDISLK
PLNYEQKDEKVAFSGGEFQLNADRDGKAISLSGEAQSGRIDAVNEYNQKVQLTFNNLKTDGSSTLASFGERVGNQKLSLE
KMTISVEGKELALLEGMEISGKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYNAQTQA
LLAQPEIANNPELYQEKVTEAFFSALPLMLKGDPVITIAPLSWKNSQGESALNLSLFLKDPATTKEAPQTLTQEVDRSVK
SLDAKLTIPVDMATELMTQVAKLEGYQEDQAKKLAKQQVEGASAMGQMFRLTTLQDNTITTSLQYANGQITLNGQKMPLE
DFVGMFAMPTLNVPAVPAIPQQ

Specific function: Unknown

COG id: COG5339

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Periplasmic side. Note=Has been isolated in association with the inner membrane, suggesting it may be tethered to the membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yihF and H.influenzae HI_1236 [H]

Homologues:

Organism=Escherichia coli, GI1787900, Length=502, Percent_Identity=99.003984063745, Blast_Score=1011, Evalue=0.0,
Organism=Escherichia coli, GI87082339, Length=479, Percent_Identity=33.8204592901879, Blast_Score=265, Evalue=4e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010352 [H]

Pfam domain/function: PF06097 DUF945 [H]

EC number: NA

Molecular weight: Translated: 54726; Mature: 54726

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKSLVAVGVIVALGVVWTGGAWYTGKKIETHLEDMVAQANAQLKLTAPESNLEVSYQNY
CCCCHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHCCCEEEEECCCCCCEEEHHHH
HRGVFSSQLQLLVKPIAGKENPWIKSGQSVIFNESVDHGPFPLAQLKKLNLLPSMASIQT
HCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHH
TLVNNEVSKPLFDMAKGETPFEINSRIGYSGDSSSDISLKPLNYEQKDEKVAFSGGEFQL
HHHCCHHCCCHHHHHCCCCCEEECCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCEEEE
NADRDGKAISLSGEAQSGRIDAVNEYNQKVQLTFNNLKTDGSSTLASFGERVGNQKLSLE
ECCCCCCEEEECCCCCCCCCCCHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEE
KMTISVEGKELALLEGMEISGKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVG
EEEEEECCCEEEEEECCCCCCCCCCCCCCCEECCHHCCCCCCEEEECCCCCCCEEEEEEE
QIDGEAWHQFSQQYNAQTQALLAQPEIANNPELYQEKVTEAFFSALPLMLKGDPVITIAP
CCCCHHHHHHHHHHCCHHHHHEECCCCCCCHHHHHHHHHHHHHHHCCCEECCCCEEEEEE
LSWKNSQGESALNLSLFLKDPATTKEAPQTLTQEVDRSVKSLDAKLTIPVDMATELMTQV
CCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHH
AKLEGYQEDQAKKLAKQQVEGASAMGQMFRLTTLQDNTITTSLQYANGQITLNGQKMPLE
HHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEEEECCCEEEECCCCCCHH
DFVGMFAMPTLNVPAVPAIPQQ
HHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNKSLVAVGVIVALGVVWTGGAWYTGKKIETHLEDMVAQANAQLKLTAPESNLEVSYQNY
CCCCHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHCCCEEEEECCCCCCEEEHHHH
HRGVFSSQLQLLVKPIAGKENPWIKSGQSVIFNESVDHGPFPLAQLKKLNLLPSMASIQT
HCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHH
TLVNNEVSKPLFDMAKGETPFEINSRIGYSGDSSSDISLKPLNYEQKDEKVAFSGGEFQL
HHHCCHHCCCHHHHHCCCCCEEECCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCEEEE
NADRDGKAISLSGEAQSGRIDAVNEYNQKVQLTFNNLKTDGSSTLASFGERVGNQKLSLE
ECCCCCCEEEECCCCCCCCCCCHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEE
KMTISVEGKELALLEGMEISGKSDLVNDGKTINSQLDYSLNSLKVQNQDLGSGKLTLKVG
EEEEEECCCEEEEEECCCCCCCCCCCCCCCEECCHHCCCCCCEEEECCCCCCCEEEEEEE
QIDGEAWHQFSQQYNAQTQALLAQPEIANNPELYQEKVTEAFFSALPLMLKGDPVITIAP
CCCCHHHHHHHHHHCCHHHHHEECCCCCCCHHHHHHHHHHHHHHHCCCEECCCCEEEEEE
LSWKNSQGESALNLSLFLKDPATTKEAPQTLTQEVDRSVKSLDAKLTIPVDMATELMTQV
CCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHH
AKLEGYQEDQAKKLAKQQVEGASAMGQMFRLTTLQDNTITTSLQYANGQITLNGQKMPLE
HHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEEEECCCEEEECCCCCCHH
DFVGMFAMPTLNVPAVPAIPQQ
HHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]