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The map label for this gene is yoaB

Identifier: 170680959

GI number: 170680959

Start: 1366382

End: 1366726

Strand: Reverse

Name: yoaB

Synonym: EcSMS35_1379

Alternate gene names: 170680959

Gene position: 1366726-1366382 (Counterclockwise)

Preceding gene: 170680439

Following gene: 170681162

Centisome position: 26.97

GC content: 51.3

Gene sequence:

>345_bases
ATGACTATCGTTCGTATCGATGCTGAAGCCCGCTGGTCTGATGTGGTGATCCACAACAACACGCTATACTACACTGGTGT
ACCGGAAAACCTCGACGCCGATGCTTTTGAGCAAACCGCCAACACGCTGGCGCAGATTGACGCCGTGCTGGAAAAACAGG
GCAGCAATAAATCGAGCATTCTGGATGCCACCATTTTCCTGGCTGATAAAAACGACTTCGCGGCGATGAATAAAGCGTGG
GATGCCTGGGTTGTCGCTGGTCATGCGCCGGTGCGCTGCACGGTACAAGCGGGTTTGATGAACCCGAAGTATAAAGTTGA
AATTAAGATTGTGGCTGCAGTGTAA

Upstream 100 bases:

>100_bases
GTCAGGATGAGGGCGCTTTCGCCAGTTGAAGTGGTGACGGCGACCTCACATTGTGGCAGTCTTTGCAGCACGAAAATGGA
AGGATAATGAGGACAAAATG

Downstream 100 bases:

>100_bases
GCTTTATCGAAGCATAATAAGTCAGACGATAATTTATCGATAATACTGGTCGGTTTTGCATAAATCGACCAGAGATTAAG
TTATTACTGTTGATGCTCCT

Product: endoribonuclease L-PSP family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 113

Protein sequence:

>114_residues
MTIVRIDAEARWSDVVIHNNTLYYTGVPENLDADAFEQTANTLAQIDAVLEKQGSNKSSILDATIFLADKNDFAAMNKAW
DAWVVAGHAPVRCTVQAGLMNPKYKVEIKIVAAV

Sequences:

>Translated_114_residues
MTIVRIDAEARWSDVVIHNNTLYYTGVPENLDADAFEQTANTLAQIDAVLEKQGSNKSSILDATIFLADKNDFAAMNKAW
DAWVVAGHAPVRCTVQAGLMNPKYKVEIKIVAAV
>Mature_113_residues
TIVRIDAEARWSDVVIHNNTLYYTGVPENLDADAFEQTANTLAQIDAVLEKQGSNKSSILDATIFLADKNDFAAMNKAWD
AWVVAGHAPVRCTVQAGLMNPKYKVEIKIVAAV

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family

Homologues:

Organism=Escherichia coli, GI87081979, Length=114, Percent_Identity=100, Blast_Score=234, Evalue=1e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOAB_ECOL6 (P0AEB8)

Other databases:

- EMBL:   AE014075
- RefSeq:   NP_754107.1
- ProteinModelPortal:   P0AEB8
- SMR:   P0AEB8
- EnsemblBacteria:   EBESCT00000042217
- GeneID:   1036666
- GenomeReviews:   AE014075_GR
- KEGG:   ecc:c2213
- GeneTree:   EBGT00050000009064
- HOGENOM:   HBG695954
- OMA:   LAECGSD
- ProtClustDB:   CLSK880215
- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897
- Gene3D:   G3DSA:3.30.1330.40
- PANTHER:   PTHR11803

Pfam domain/function: PF01042 Ribonuc_L-PSP; SSF55298 YjgF/chorismate_mutase-like

EC number: NA

Molecular weight: Translated: 12493; Mature: 12362

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIVRIDAEARWSDVVIHNNTLYYTGVPENLDADAFEQTANTLAQIDAVLEKQGSNKSSI
CEEEEEECCCCEEEEEEECCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCE
LDATIFLADKNDFAAMNKAWDAWVVAGHAPVRCTVQAGLMNPKYKVEIKIVAAV
EEEEEEEECCCCCCHHCCCCCEEEEECCCCEEEEEEECCCCCCEEEEEEEEEEC
>Mature Secondary Structure 
TIVRIDAEARWSDVVIHNNTLYYTGVPENLDADAFEQTANTLAQIDAVLEKQGSNKSSI
EEEEEECCCCEEEEEEECCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCE
LDATIFLADKNDFAAMNKAWDAWVVAGHAPVRCTVQAGLMNPKYKVEIKIVAAV
EEEEEEEECCCCCCHHCCCCCEEEEECCCCEEEEEEECCCCCCEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157