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The map label for this gene is yiaF

Identifier: 170680625

GI number: 170680625

Start: 3944482

End: 3945192

Strand: Reverse

Name: yiaF

Synonym: EcSMS35_3875

Alternate gene names: 170680625

Gene position: 3945192-3944482 (Counterclockwise)

Preceding gene: 170683209

Following gene: 170681133

Centisome position: 77.84

GC content: 50.77

Gene sequence:

>711_bases
ATGGCGACAGGAAAGTCCTGCTCTCGCTGGTTTGCGCCTCTTGCGGCGTTATTAATGGTAGTTAGCCTGAGTGGGTGTTT
TGATAAAGAAGGCGATCAGCGTAAAGCGTTTATCGACTTCCTGCAGAATACAGTGATGCGTAGCGGTGAACGTCTACCAA
CCCTGACTGCCGATCAGAAAAAACAGTTTGGTCCTTTTGTCTCTGATTACGCGATTCTGTATGGTTATTCTCAGCAGGTG
AATCAGGCGATGGATTCCGGTCTGCGCCCGGTTGTAGACAGCGTTAACGCAATTCGCGTACCGCAGGATTACGTTACGCA
AAGCGGCCCACTGCGTGAAATGAACGGTTCTCTGGGTGTGCTGGCGCAACAGCTGCAAAATGCGAAGTTGCAGGCCGATG
CTGCACACTCTGCGCTAAAACAGAGCGATGACCTGAAACCGGTTTTCGATCAGGCATTCACCAAAGTGGTAACGACGCCA
GCTGATGCATTGCAACCGTTGATTCCGGCGGCACAAACTTTCACGCAACAACTGGTGATGGTTGGAGACTACATTGCTCA
GCAAGGTACTCAGGTGAGCTTTGTCGCAAATGGCATCCAGTTCCCGACGTCACAGCAGGCAAGTGAATATAACAAACTGA
TTGCGCCATTACCGGCACAGCATCAGGCGTTTAATCAGGCCTGGACTACAGCAGTTACTGCAACCCAATAA

Upstream 100 bases:

>100_bases
ACGTAGAAAGGGTATCCTGCAAGCCTGTCCTGGACTATCCTTGTCACGTCAGACACGCGTGTGTCGTTGTGCGCTTTTTT
TGGGTGAAAGGAGTAAGAAA

Downstream 100 bases:

>100_bases
AGAGTAAAAGCCCGAGCGATTATCGGGCTTTACTCCACGCAGTCGCGGCTTAGTCCGCGACGTGCGGATTCACACAGTTC
TTCTCAACCTTTCCTTGTAA

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MATGKSCSRWFAPLAALLMVVSLSGCFDKEGDQRKAFIDFLQNTVMRSGERLPTLTADQKKQFGPFVSDYAILYGYSQQV
NQAMDSGLRPVVDSVNAIRVPQDYVTQSGPLREMNGSLGVLAQQLQNAKLQADAAHSALKQSDDLKPVFDQAFTKVVTTP
ADALQPLIPAAQTFTQQLVMVGDYIAQQGTQVSFVANGIQFPTSQQASEYNKLIAPLPAQHQAFNQAWTTAVTATQ

Sequences:

>Translated_236_residues
MATGKSCSRWFAPLAALLMVVSLSGCFDKEGDQRKAFIDFLQNTVMRSGERLPTLTADQKKQFGPFVSDYAILYGYSQQV
NQAMDSGLRPVVDSVNAIRVPQDYVTQSGPLREMNGSLGVLAQQLQNAKLQADAAHSALKQSDDLKPVFDQAFTKVVTTP
ADALQPLIPAAQTFTQQLVMVGDYIAQQGTQVSFVANGIQFPTSQQASEYNKLIAPLPAQHQAFNQAWTTAVTATQ
>Mature_235_residues
ATGKSCSRWFAPLAALLMVVSLSGCFDKEGDQRKAFIDFLQNTVMRSGERLPTLTADQKKQFGPFVSDYAILYGYSQQVN
QAMDSGLRPVVDSVNAIRVPQDYVTQSGPLREMNGSLGVLAQQLQNAKLQADAAHSALKQSDDLKPVFDQAFTKVVTTPA
DALQPLIPAAQTFTQQLVMVGDYIAQQGTQVSFVANGIQFPTSQQASEYNKLIAPLPAQHQAFNQAWTTAVTATQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082290, Length=236, Percent_Identity=100, Blast_Score=481, Evalue=1e-137,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YIAF_ECO57 (P0ADK2)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   C86030
- PIR:   G91183
- RefSeq:   NP_290139.1
- RefSeq:   NP_312466.1
- ProteinModelPortal:   P0ADK2
- EnsemblBacteria:   EBESCT00000025840
- EnsemblBacteria:   EBESCT00000058867
- GeneID:   915662
- GeneID:   961058
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z4979
- KEGG:   ecs:ECs4439
- GeneTree:   EBGT00050000010454
- HOGENOM:   HBG417178
- OMA:   NAKMQAD
- ProtClustDB:   CLSK880721
- BioCyc:   ECOL83334:ECS4439-MONOMER
- InterPro:   IPR021413

Pfam domain/function: PF11254 DUF3053

EC number: NA

Molecular weight: Translated: 25663; Mature: 25532

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGKSCSRWFAPLAALLMVVSLSGCFDKEGDQRKAFIDFLQNTVMRSGERLPTLTADQK
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHH
KQFGPFVSDYAILYGYSQQVNQAMDSGLRPVVDSVNAIRVPQDYVTQSGPLREMNGSLGV
HHHCCHHHHHHHHHCCHHHHHHHHHCCCHHHHHCCHHEECCHHHHHCCCCHHHHCCHHHH
LAQQLQNAKLQADAAHSALKQSDDLKPVFDQAFTKVVTTPADALQPLIPAAQTFTQQLVM
HHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
VGDYIAQQGTQVSFVANGIQFPTSQQASEYNKLIAPLPAQHQAFNQAWTTAVTATQ
HHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ATGKSCSRWFAPLAALLMVVSLSGCFDKEGDQRKAFIDFLQNTVMRSGERLPTLTADQK
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHH
KQFGPFVSDYAILYGYSQQVNQAMDSGLRPVVDSVNAIRVPQDYVTQSGPLREMNGSLGV
HHHCCHHHHHHHHHCCHHHHHHHHHCCCHHHHHCCHHEECCHHHHHCCCCHHHHCCHHHH
LAQQLQNAKLQADAAHSALKQSDDLKPVFDQAFTKVVTTPADALQPLIPAAQTFTQQLVM
HHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
VGDYIAQQGTQVSFVANGIQFPTSQQASEYNKLIAPLPAQHQAFNQAWTTAVTATQ
HHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796