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The map label for this gene is petD

Identifier: 170077463

GI number: 170077463

Start: 867201

End: 867683

Strand: Reverse

Name: petD

Synonym: SYNPCC7002_A0841

Alternate gene names: 170077463

Gene position: 867683-867201 (Counterclockwise)

Preceding gene: 170077464

Following gene: 170077462

Centisome position: 28.85

GC content: 50.72

Gene sequence:

>483_bases
ATGTCTATCATGAAAAAGCCGGATCTTAGCGATCCAAAACTCCGGGCAAAACTGGCTCAAAACATGGGACACAATTACTA
TGGTGAGCCGGCTTGGCCCAATGACATTCTATTTACCTTCCCCATCTGTATTGCGGGAACCATCGGTTTAATTACCGGCT
TGGCGATTCTCGATCCAGCGATGATCGGTGAACCGGGTAATCCTTTCGCAACACCCCTGGAAATTTTGCCGGAGTGGTAC
CTCTACCCCGTCTTCCAGATCCTCCGGGTACTGCCCAACAAACTGCTGGGTATTGCTTGTCAAGGGGCGATTCCGTTGGG
TTTGATGATGGTGCCTTTCATTGAAAGCGTCAACAAATTCCAAAACCCCTTCCGTCGTCCGGTGGCGATGGCTGTTTTCC
TCTTTGGGACTGCGGTCACTCTCTGGCTCGGTGCGGGTGCTTGTTTCCCTATTGATGAGTCTTTGACTTTGGGCCTGTTC
TAA

Upstream 100 bases:

>100_bases
ACTTCCTCATGATCCGTAAGCAAGGTATTTCTGGTCCTTTGTAAGGATCAGGTTTTCCGTTTGCTCAAAACAACGTTCTT
GTTGAGGAGAACTTTTACTC

Downstream 100 bases:

>100_bases
AACCCACGCCTAATTTTTTGGACTAATTTTATTTTTCATTTCTAAACAGATTGGCGATCGCCCCCTTTGGCTCCGGCTAA
ACGATGGCGATCGCCTTTTT

Product: cytochrome b6-f complex subunit IV

Products: NA

Alternate protein names: 17 kDa polypeptide

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MSIMKKPDLSDPKLRAKLAQNMGHNYYGEPAWPNDILFTFPICIAGTIGLITGLAILDPAMIGEPGNPFATPLEILPEWY
LYPVFQILRVLPNKLLGIACQGAIPLGLMMVPFIESVNKFQNPFRRPVAMAVFLFGTAVTLWLGAGACFPIDESLTLGLF

Sequences:

>Translated_160_residues
MSIMKKPDLSDPKLRAKLAQNMGHNYYGEPAWPNDILFTFPICIAGTIGLITGLAILDPAMIGEPGNPFATPLEILPEWY
LYPVFQILRVLPNKLLGIACQGAIPLGLMMVPFIESVNKFQNPFRRPVAMAVFLFGTAVTLWLGAGACFPIDESLTLGLF
>Mature_159_residues
SIMKKPDLSDPKLRAKLAQNMGHNYYGEPAWPNDILFTFPICIAGTIGLITGLAILDPAMIGEPGNPFATPLEILPEWYL
YPVFQILRVLPNKLLGIACQGAIPLGLMMVPFIESVNKFQNPFRRPVAMAVFLFGTAVTLWLGAGACFPIDESLTLGLF

Specific function: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family. PetD subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PETD_SYNP2 (P28057)

Other databases:

- EMBL:   X63049
- EMBL:   CP000951
- RefSeq:   YP_001734101.1
- ProteinModelPortal:   P28057
- SMR:   P28057
- GeneID:   6057633
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A0841
- HOGENOM:   HBG286085
- OMA:   PFIESVN
- ProtClustDB:   PRK13476
- GO:   GO:0015979
- GO:   GO:0006810
- HAMAP:   MF_01344
- InterPro:   IPR016175
- InterPro:   IPR005798
- InterPro:   IPR005870
- Gene3D:   G3DSA:1.20.810.10
- PANTHER:   PTHR19271
- PIRSF:   PIRSF000033
- TIGRFAMs:   TIGR01156

Pfam domain/function: PF00032 Cytochrom_B_C; SSF81648 Cytochrome_b/b6_C

EC number: NA

Molecular weight: Translated: 17537; Mature: 17406

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: PS51003 CYTB_CTER

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1b7b7eec)-; HASH(0x1bb8c354)-; HASH(0x1ada7ebc)-;

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIMKKPDLSDPKLRAKLAQNMGHNYYGEPAWPNDILFTFPICIAGTIGLITGLAILDPA
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MIGEPGNPFATPLEILPEWYLYPVFQILRVLPNKLLGIACQGAIPLGLMMVPFIESVNKF
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
QNPFRRPVAMAVFLFGTAVTLWLGAGACFPIDESLTLGLF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
>Mature Secondary Structure 
SIMKKPDLSDPKLRAKLAQNMGHNYYGEPAWPNDILFTFPICIAGTIGLITGLAILDPA
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MIGEPGNPFATPLEILPEWYLYPVFQILRVLPNKLLGIACQGAIPLGLMMVPFIESVNKF
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
QNPFRRPVAMAVFLFGTAVTLWLGAGACFPIDESLTLGLF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1421151