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The map label for this gene is ydcI [H]

Identifier: 170026326

GI number: 170026326

Start: 4552827

End: 4554005

Strand: Reverse

Name: ydcI [H]

Synonym: YPK_4119

Alternate gene names: 170026326

Gene position: 4554005-4552827 (Counterclockwise)

Preceding gene: 170026331

Following gene: 170026323

Centisome position: 97.11

GC content: 51.4

Gene sequence:

>1179_bases
ATGACGGCTGAACAGGGGGCAGCTTCCTTAGCGGCGCTCAATTTATTTCGCACTCAGTCAGCGATTACTCGTTCTATTCG
TGATCTTGAACACACTTTAGCCATCTCGTTATTTGAACGCCACGCCAAGGGCATGCTGTTAACCGATTTGGGCAACGTTA
TTCTCCCACGAGCCCGTTCTGCCATGGAGGAGTTGACTCGGATCCCGGCACTGCTGCGTCGGTTACAACAACGCGACGAT
GAGGGTATTGAAGACCTTGAACCCACATGGTTATTCAATGAACGGCGGCTACAGATTTTCCTCTCGCTCTATCGCCAGCA
GCACGCGTTGCATGTCGCTCAGGCACTGGATATCACCCAGTCGGCGGTAAGCGCCGCGTTGAAGGTTTTGGAGAAGGGGG
CGGGTATGTATCTGTTCCATCGAACACCAAAAGGGATGTTGCCGACCCCTGCCGGTCATGAAATTGCGCCCTGTATCAGC
CGGGCATTGAATGCGCTCCACCATATTCCGGAAGAGATCACCGCACATAGAGGGGATTTGACCGGCTCGGTACGTGTTGG
CGCTCTGCCATTAAGCCGTGCACGCCTGCTACCACAGGCAATGATCAAGCTGATTTCTCGCCACCCTGGCATAAAAATAG
TCACTAATGAGAGTGGATTTACCGCCCTGATAGCTGAACTGCGCGCCGGTGATATCGATTTCATTATCGGTGCACTGCGC
AATGAGCAAATGCTTTTAGATATCCATAGCGAAATATTATTTGAAGAAGAGCTGATTTTATTGGCGCGGCCCAACCATCC
CTTGTCTGATCGCAGGGTAAAAAACCAAGAACTAAAAGATATTCAATGGGTTTTACCCCGAAATCACGCCCCATCACGCC
ACTTGCTGGAGGTCGCATTCTGCAAAATGGGACTCGCATCGCCCCAGCCAGTAGTCGAAAGCGGTGATCCCGCCGTGGTA
CGTGCGCTATTGCTTGGTTCTGATATGGTGGCGGCAGTTTCCTCCCATCAACTTGATTTTGAAGTTTCAGAAGGGATCCT
TATACCGCTGCAGGTCAACCTTACAGGTACGCGACGCGAGATAGGCCTGATGACTCGCCAGAAAGCCTTGAATTCACCCG
CTACCGATGCCCTGATCAATTGCGTTCGCGAAGTTATTCAATCGAGTAACGATAAATAG

Upstream 100 bases:

>100_bases
TTTATTTAAGCTGAAAAAATTAAATAAAATAACGCGGCGAAATATGCAAAAGAAGAATGATCGTAACTCGATAAAAATTA
TGCAAATAAGAGCATTTTGC

Downstream 100 bases:

>100_bases
GCAGCTTTAGATAAATGAGTTAACTATCTAATTTACTTTTTGATTGATAAGAATACTTTTGTCAGAAAAACAAAAAACTC
CATTTTAGATTGGCACAGAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 391

Protein sequence:

>392_residues
MTAEQGAASLAALNLFRTQSAITRSIRDLEHTLAISLFERHAKGMLLTDLGNVILPRARSAMEELTRIPALLRRLQQRDD
EGIEDLEPTWLFNERRLQIFLSLYRQQHALHVAQALDITQSAVSAALKVLEKGAGMYLFHRTPKGMLPTPAGHEIAPCIS
RALNALHHIPEEITAHRGDLTGSVRVGALPLSRARLLPQAMIKLISRHPGIKIVTNESGFTALIAELRAGDIDFIIGALR
NEQMLLDIHSEILFEEELILLARPNHPLSDRRVKNQELKDIQWVLPRNHAPSRHLLEVAFCKMGLASPQPVVESGDPAVV
RALLLGSDMVAAVSSHQLDFEVSEGILIPLQVNLTGTRREIGLMTRQKALNSPATDALINCVREVIQSSNDK

Sequences:

>Translated_392_residues
MTAEQGAASLAALNLFRTQSAITRSIRDLEHTLAISLFERHAKGMLLTDLGNVILPRARSAMEELTRIPALLRRLQQRDD
EGIEDLEPTWLFNERRLQIFLSLYRQQHALHVAQALDITQSAVSAALKVLEKGAGMYLFHRTPKGMLPTPAGHEIAPCIS
RALNALHHIPEEITAHRGDLTGSVRVGALPLSRARLLPQAMIKLISRHPGIKIVTNESGFTALIAELRAGDIDFIIGALR
NEQMLLDIHSEILFEEELILLARPNHPLSDRRVKNQELKDIQWVLPRNHAPSRHLLEVAFCKMGLASPQPVVESGDPAVV
RALLLGSDMVAAVSSHQLDFEVSEGILIPLQVNLTGTRREIGLMTRQKALNSPATDALINCVREVIQSSNDK
>Mature_391_residues
TAEQGAASLAALNLFRTQSAITRSIRDLEHTLAISLFERHAKGMLLTDLGNVILPRARSAMEELTRIPALLRRLQQRDDE
GIEDLEPTWLFNERRLQIFLSLYRQQHALHVAQALDITQSAVSAALKVLEKGAGMYLFHRTPKGMLPTPAGHEIAPCISR
ALNALHHIPEEITAHRGDLTGSVRVGALPLSRARLLPQAMIKLISRHPGIKIVTNESGFTALIAELRAGDIDFIIGALRN
EQMLLDIHSEILFEEELILLARPNHPLSDRRVKNQELKDIQWVLPRNHAPSRHLLEVAFCKMGLASPQPVVESGDPAVVR
ALLLGSDMVAAVSSHQLDFEVSEGILIPLQVNLTGTRREIGLMTRQKALNSPATDALINCVREVIQSSNDK

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081904, Length=309, Percent_Identity=27.5080906148867, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787601, Length=197, Percent_Identity=28.9340101522843, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788748, Length=294, Percent_Identity=25.1700680272109, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1789506, Length=261, Percent_Identity=24.5210727969349, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788481, Length=206, Percent_Identity=27.6699029126214, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 43387; Mature: 43256

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAEQGAASLAALNLFRTQSAITRSIRDLEHTLAISLFERHAKGMLLTDLGNVILPRARS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHH
AMEELTRIPALLRRLQQRDDEGIEDLEPTWLFNERRLQIFLSLYRQQHALHVAQALDITQ
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAVSAALKVLEKGAGMYLFHRTPKGMLPTPAGHEIAPCISRALNALHHIPEEITAHRGDL
HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCC
TGSVRVGALPLSRARLLPQAMIKLISRHPGIKIVTNESGFTALIAELRAGDIDFIIGALR
CCCEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHC
NEQMLLDIHSEILFEEELILLARPNHPLSDRRVKNQELKDIQWVLPRNHAPSRHLLEVAF
CCHHEEHHHHHHHHHCCEEEEECCCCCCCCCHHCHHHHHHHHEECCCCCCCHHHHHHHHH
CKMGLASPQPVVESGDPAVVRALLLGSDMVAAVSSHQLDFEVSEGILIPLQVNLTGTRRE
HHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCEEECCCEEEEEEEEECCCHHH
IGLMTRQKALNSPATDALINCVREVIQSSNDK
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TAEQGAASLAALNLFRTQSAITRSIRDLEHTLAISLFERHAKGMLLTDLGNVILPRARS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHH
AMEELTRIPALLRRLQQRDDEGIEDLEPTWLFNERRLQIFLSLYRQQHALHVAQALDITQ
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAVSAALKVLEKGAGMYLFHRTPKGMLPTPAGHEIAPCISRALNALHHIPEEITAHRGDL
HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCC
TGSVRVGALPLSRARLLPQAMIKLISRHPGIKIVTNESGFTALIAELRAGDIDFIIGALR
CCCEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHC
NEQMLLDIHSEILFEEELILLARPNHPLSDRRVKNQELKDIQWVLPRNHAPSRHLLEVAF
CCHHEEHHHHHHHHHCCEEEEECCCCCCCCCHHCHHHHHHHHEECCCCCCCHHHHHHHHH
CKMGLASPQPVVESGDPAVVRALLLGSDMVAAVSSHQLDFEVSEGILIPLQVNLTGTRRE
HHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCEEECCCEEEEEEEEECCCHHH
IGLMTRQKALNSPATDALINCVREVIQSSNDK
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]