Click here to switch to the map view.

The map label for this gene is rffC [H]

Identifier: 170026237

GI number: 170026237

Start: 4441435

End: 4442172

Strand: Reverse

Name: rffC [H]

Synonym: YPK_4027

Alternate gene names: 170026237

Gene position: 4442172-4441435 (Counterclockwise)

Preceding gene: 170026238

Following gene: 170026236

Centisome position: 94.73

GC content: 51.08

Gene sequence:

>738_bases
ATGCCCGTCCACGCCAGTATTGAGCCACTGGGCTGGGAAAGTGAATTTTTCCAGCGCCAAAGTGCAAAATTGATTTTTTC
CGACTCAGCCCCGCCACTTAACCCGGCTGAGTTGGCTGCTTTTACTCTCGTTCAGGCTAAAGTACCTACTCATCGCCTTG
ATCTTATAGATGCCCTGAGCCAACTTGATTTTCATTTGGTTGAAGGGGAAATTGATCTGTCGCTGGCCGTGGGTGAAAAA
GAAGGTATTGGCACGGAAAATGCTACATCAGAACCCAATATGGGGCCCTACTCGCAACGGGTTGCCACCGAGGCAGATAT
TCCGCAGTTGCGCCGTGTTGCTGCCAGTACTTTTGCCTTAAGCCGCTTTCGTGCGCCTTGGTATGACGCACAGGACAGTG
GGCGATTTTATGCTTTGTGGGTTGAAAAGGCGGTGCTGGGAACCTTTGATCACCAATGTTTATTGGTGCTCGACTCTACG
GATCAACCCGTCGGGTTTGTGACGTTGCGTGACTTGCAAGACGGGAGTGCGCGTATTGGCCTGTTGGCCGTATTCCCCGG
TGCACAGAGTAAAGGTATAGGGTTAAGATTAATGTCGGCGGCGAAGCAGTGGTGCCAGCATCATGGGTTACACCGGTTAC
GGGTAGCCACACAAATGAGCAATATTGCTGCTTTACGTCTCTATATTCGTAGTGGTGCCTCCATTGAGAGTACCGCGTAT
TGGTTATGCAGGGGATGA

Upstream 100 bases:

>100_bases
ATTGCCTGGCGTAACGGTTGGTTGGATGATGATGGCGTAAAACGTGCGGCAACCGCGCTGGCGAAAACCGGTTATGGCAA
ATATCTGTTGGATCTGTTAC

Downstream 100 bases:

>100_bases
GATGATTCCATTTAACACTCCACCGATAGTGGGCACTGAACTGGGTTATATGCAGGCTGCGATGAGCAGTGGCAAGTTAT
GCGGTGATGGTGGTTTTACC

Product: TDP-fucosamine acetyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MPVHASIEPLGWESEFFQRQSAKLIFSDSAPPLNPAELAAFTLVQAKVPTHRLDLIDALSQLDFHLVEGEIDLSLAVGEK
EGIGTENATSEPNMGPYSQRVATEADIPQLRRVAASTFALSRFRAPWYDAQDSGRFYALWVEKAVLGTFDHQCLLVLDST
DQPVGFVTLRDLQDGSARIGLLAVFPGAQSKGIGLRLMSAAKQWCQHHGLHRLRVATQMSNIAALRLYIRSGASIESTAY
WLCRG

Sequences:

>Translated_245_residues
MPVHASIEPLGWESEFFQRQSAKLIFSDSAPPLNPAELAAFTLVQAKVPTHRLDLIDALSQLDFHLVEGEIDLSLAVGEK
EGIGTENATSEPNMGPYSQRVATEADIPQLRRVAASTFALSRFRAPWYDAQDSGRFYALWVEKAVLGTFDHQCLLVLDST
DQPVGFVTLRDLQDGSARIGLLAVFPGAQSKGIGLRLMSAAKQWCQHHGLHRLRVATQMSNIAALRLYIRSGASIESTAY
WLCRG
>Mature_244_residues
PVHASIEPLGWESEFFQRQSAKLIFSDSAPPLNPAELAAFTLVQAKVPTHRLDLIDALSQLDFHLVEGEIDLSLAVGEKE
GIGTENATSEPNMGPYSQRVATEADIPQLRRVAASTFALSRFRAPWYDAQDSGRFYALWVEKAVLGTFDHQCLLVLDSTD
QPVGFVTLRDLQDGSARIGLLAVFPGAQSKGIGLRLMSAAKQWCQHHGLHRLRVATQMSNIAALRLYIRSGASIESTAYW
LCRG

Specific function: Transaminase converting thymidine diphosphate(TDP)-4- keto-6-deoxy-D-glucose to TDP-4-amino-4,6-dideoxy-D-galactose, the immediate precursor of the ECA sugar TDP-Fuc4NAc [H]

COG id: COG0454

COG function: function code KR; Histone acetyltransferase HPA2 and related acetyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 N-acetyltransferase domain [H]

Homologues:

Organism=Escherichia coli, GI145693203, Length=244, Percent_Identity=49.1803278688525, Blast_Score=218, Evalue=4e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000182
- InterPro:   IPR012752
- InterPro:   IPR016181
- InterPro:   IPR002110
- InterPro:   IPR020683 [H]

Pfam domain/function: PF00583 Acetyltransf_1 [H]

EC number: NA

Molecular weight: Translated: 26949; Mature: 26818

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVHASIEPLGWESEFFQRQSAKLIFSDSAPPLNPAELAAFTLVQAKVPTHRLDLIDALS
CCCCCCCCCCCCCHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
QLDFHLVEGEIDLSLAVGEKEGIGTENATSEPNMGPYSQRVATEADIPQLRRVAASTFAL
HCCEEEEECEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHH
SRFRAPWYDAQDSGRFYALWVEKAVLGTFDHQCLLVLDSTDQPVGFVTLRDLQDGSARIG
HHHCCCCCCCCCCCCEEEEEEEHHHHCCCCCEEEEEECCCCCCEEEEEEEECCCCCCEEE
LLAVFPGAQSKGIGLRLMSAAKQWCQHHGLHRLRVATQMSNIAALRLYIRSGASIESTAY
EEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEEEECCCCCCCCEEE
WLCRG
EEECC
>Mature Secondary Structure 
PVHASIEPLGWESEFFQRQSAKLIFSDSAPPLNPAELAAFTLVQAKVPTHRLDLIDALS
CCCCCCCCCCCCHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
QLDFHLVEGEIDLSLAVGEKEGIGTENATSEPNMGPYSQRVATEADIPQLRRVAASTFAL
HCCEEEEECEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHH
SRFRAPWYDAQDSGRFYALWVEKAVLGTFDHQCLLVLDSTDQPVGFVTLRDLQDGSARIG
HHHCCCCCCCCCCCCEEEEEEEHHHHCCCCCEEEEEECCCCCCEEEEEEEECCCCCCEEE
LLAVFPGAQSKGIGLRLMSAAKQWCQHHGLHRLRVATQMSNIAALRLYIRSGASIESTAY
EEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEEEECCCCCCCCEEE
WLCRG
EEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1379743; 9278503; 8366065 [H]