| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is uvrA [H]
Identifier: 170026064
GI number: 170026064
Start: 4240281
End: 4243124
Strand: Direct
Name: uvrA [H]
Synonym: YPK_3851
Alternate gene names: 170026064
Gene position: 4240281-4243124 (Clockwise)
Preceding gene: 170026062
Following gene: 170026069
Centisome position: 90.42
GC content: 51.9
Gene sequence:
>2844_bases ATGGATAATATTGAAGTTCGGGGCGCTCGCACCCACAATCTTAAGAATATCAACCTGATTATCCCGCGCGACAAACTGAT TGTTGTCACCGGCCTATCAGGTTCAGGCAAATCCTCACTGGCTTTTGATACCTTGTATGCCGAAGGTCAACGCCGTTATG TTGAGTCTCTCTCCGCCTATGCACGCCAATTTCTGTCGCTGATGGAAAAACCGGATGTTGACCATATTGAAGGCCTGTCT CCGGCTATCTCTATCGAGCAAAAATCAACCTCCCATAACCCACGGTCAACTGTCGGTACTATCACTGAAATCCATGATTA CCTGCGCTTGCTGTTCGCTCGAGTCGGCGAGCCGCGCTGCCCTGATCATGATGTCCCATTAGCGGCGCAAACAGTCAGCC AAATGGTTGATAACGTGATAAGCCAGCCGGAAGGCCGCCGTCTGATGCTGTTGGCACCGGTGGTAAAAGATCGCAAAGGT GAACACACTAAAATACTGGAAAATCTGGCCGCTCAAGGTTACATCCGGGCGCGGATCGATGGCGAGGTTTGTGATCTGTC TGATCCGCCCAAATTAGAGCTGCAAAAGAAACACACCATTGAAGTGGTGGTTGACCGTTTCAAGGTACGCGAAGATCTGG CGCAACGTTTGGCAGAATCATTTGAAACCGCATTGGCGTTATCCGGCGGTACCGCCGTGGTAGCCGATATGGACGATCCG CATGTGGAGGAGTTATTATTTTCCGCTAACTTTGCCTGCCCGATTTGCGGTTACAGCATGAGAGAGTTGGAACCACGCCT GTTCTCCTTTAACAACCCGGCGGGTGCCTGCCCAACGTGTGATGGCTTGGGTGTCCAGCAGTTTTTTGATCCAGACCGCG TGCTGCAAAACCCTGAGCTCTCTTTAGCTGGCGGAGCGATTCGCGGCTGGGATCGCCGTAACTTCTATTACTTCCAGATG CTACGTTCACTGGCCGAGCATTATAAATTTGATATCGAAGCGCCGTTTAACTCACTGGACAGCGCCGTCCAGCAAGCCGT GCTATACGGTTCAGGCAAAGATACCATCGAGTTCAAGTACATTAATGATCGCGGTGATACTACCGTTCGCCGCCACCCTT TTGAGGGGGTGTTGCACAATATGGAACGCCGTTATAAAGAGACGGAATCCAGTGCGGTGCGCGAAGAGTTAGCCAAATTT ATCAGCAACCGCTCCTGTGCGTCATGCAGCGGTACCCGTCTGCGCAGAGAGGCTCGTTATGTCTTCGTGGAAAACACCAC CCTGCCAGAGATTTCTGAACTGAGCATCGGCCATGCACTGAGTTTCTTCCAGAATATGAAGCTCAGTGGTCAGCGTGCAC AAATCGCTGAAAAGATACTGAAAGAAATTGGCGATAGGCTGAAATTCCTGGTTAACGTCGGGCTGAATTATCTGTCTTTA TCCCGATCTGCCGAAACCCTGTCCGGTGGCGAAGCACAGCGTATCCGTCTGGCTAGCCAGATTGGCGCGGGTTTGGTCGG CGTTATGTATGTGCTGGATGAGCCGTCTATCGGTTTACATCAGCGCGATAACGAACGCTTGCTGGAGACATTGATTCACC TACGTAATCTGGGTAACACCGTGATTGTGGTGGAACATGATGAAGATGCCATCCGGGCCGCAGATCATGTGATTGATATC GGCCCTGGGGCCGGCGTGCACGGAGGTGAAGTTGTCGCCGAAGGAACGGTAGATGACATCATGGCCGCACCGGCGTCACT CACGGGCCAGTTCCTCAGCGGTAAGCGGAGCATCGCCATCCCAGAGAAACGGGTCAGTGCTGATCCGAGCAAAGTCTTAA AGCTGATAGGGGCTACGGGCAATAACCTGAAAGATGTCACTCTGACGCTGCCTGTCGGGCTATTCAGTTGCATCACCGGG GTCTCCGGCTCGGGGAAATCGACGCTGATCAACGATACTTTATACAGTATTGCCCAACGCCAACTGAACGGCGCGACCAT CACCGAACCCGCACCATACCGCGAGATCCAAGGGCTAGAACATTTCGATAAAGTCATCGACATTGATCAAAGCCCGATTG GCCGTACGCCGCGTTCTAACCCAGCCACCTATACCGGCATCTTTACCCCCATTCGCGAGTTATTTGCCGGAGTGCCGGAA TCACGCACCCGCGGTTATACGCCAGGCCGTTTCAGTTTTAACGTCAAAGGTGGGCGCTGTGAAGCCTGCCAGGGCGATGG GGTAATTAAAGTAGAAATGCACTTTCTGCCTGATATTTATGTTCCTTGCGATCACTGTAAAGGTAAGCGTTATAACCGTG AAACGCTGGAAATAAAATATAAAGGTAAAAGTATTCACGAAGTTCTGGCGATGACTATTGAAGAGGCCCGCGAGTTCTTT GATGCCGTACCTGCTCTGGCACGTAAGCTGCAAACCCTAATAGATGTTGGCCTGTCCTATATTTGTCTGGGCCAATCAGC CACAACGTTATCTGGTGGGGAAGCACAGCGGGTGAAACTATCGCGCGAACTGTCAAAACGCGGGACCGGCCAGACATTGT ATATTCTGGATGAGCCTACTACCGGCCTGCATTTTGCCGATATTCAGCAACTGCTAGCGGTATTGCATCAGTTACGGGAT CAGGGCAATACCATTGTAGTGATTGAACACAATCTGGACGTAATTAAGACGGCGGATTGGATTGTCGATCTGGGGCCAGA AGGCGGCAGTGGTGGCGGTGAAATTTTGGTTTCCGGCACACCAGAGACGGTGGCGGAATGCGCGGCATCACACACGGCAC GGTTCCTTAAGCCGATGTTGCAGCGTAAGCCACAAACCGTTTAA
Upstream 100 bases:
>100_bases GATTCGGGTGAGTGAGCGCAGCTAACAACCCTGCAGCTTCAAGTACGAAGAGTAAAAAAAGGCACGCTGAGAGGCTCAGT TCAATCCGGGAAGAGTTTGA
Downstream 100 bases:
>100_bases TGAACCACTCTGGGGCAATCAATGTATTGCTCCAGAGGGTATGACATTCAGCGTTTTGATCATCAAACTATTCATCCCTA AAATCATTGACGTTACAGAT
Product: excinuclease ABC subunit A
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 947; Mature: 947
Protein sequence:
>947_residues MDNIEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS PAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPDHDVPLAAQTVSQMVDNVISQPEGRRLMLLAPVVKDRKG EHTKILENLAAQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVREDLAQRLAESFETALALSGGTAVVADMDDP HVEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQFFDPDRVLQNPELSLAGGAIRGWDRRNFYYFQM LRSLAEHYKFDIEAPFNSLDSAVQQAVLYGSGKDTIEFKYINDRGDTTVRRHPFEGVLHNMERRYKETESSAVREELAKF ISNRSCASCSGTRLRREARYVFVENTTLPEISELSIGHALSFFQNMKLSGQRAQIAEKILKEIGDRLKFLVNVGLNYLSL SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLIHLRNLGNTVIVVEHDEDAIRAADHVIDI GPGAGVHGGEVVAEGTVDDIMAAPASLTGQFLSGKRSIAIPEKRVSADPSKVLKLIGATGNNLKDVTLTLPVGLFSCITG VSGSGKSTLINDTLYSIAQRQLNGATITEPAPYREIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGVPE SRTRGYTPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDHCKGKRYNRETLEIKYKGKSIHEVLAMTIEEAREFF DAVPALARKLQTLIDVGLSYICLGQSATTLSGGEAQRVKLSRELSKRGTGQTLYILDEPTTGLHFADIQQLLAVLHQLRD QGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECAASHTARFLKPMLQRKPQTV
Sequences:
>Translated_947_residues MDNIEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS PAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPDHDVPLAAQTVSQMVDNVISQPEGRRLMLLAPVVKDRKG EHTKILENLAAQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVREDLAQRLAESFETALALSGGTAVVADMDDP HVEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQFFDPDRVLQNPELSLAGGAIRGWDRRNFYYFQM LRSLAEHYKFDIEAPFNSLDSAVQQAVLYGSGKDTIEFKYINDRGDTTVRRHPFEGVLHNMERRYKETESSAVREELAKF ISNRSCASCSGTRLRREARYVFVENTTLPEISELSIGHALSFFQNMKLSGQRAQIAEKILKEIGDRLKFLVNVGLNYLSL SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLIHLRNLGNTVIVVEHDEDAIRAADHVIDI GPGAGVHGGEVVAEGTVDDIMAAPASLTGQFLSGKRSIAIPEKRVSADPSKVLKLIGATGNNLKDVTLTLPVGLFSCITG VSGSGKSTLINDTLYSIAQRQLNGATITEPAPYREIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGVPE SRTRGYTPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDHCKGKRYNRETLEIKYKGKSIHEVLAMTIEEAREFF DAVPALARKLQTLIDVGLSYICLGQSATTLSGGEAQRVKLSRELSKRGTGQTLYILDEPTTGLHFADIQQLLAVLHQLRD QGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECAASHTARFLKPMLQRKPQTV >Mature_947_residues MDNIEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS PAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPDHDVPLAAQTVSQMVDNVISQPEGRRLMLLAPVVKDRKG EHTKILENLAAQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVREDLAQRLAESFETALALSGGTAVVADMDDP HVEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQFFDPDRVLQNPELSLAGGAIRGWDRRNFYYFQM LRSLAEHYKFDIEAPFNSLDSAVQQAVLYGSGKDTIEFKYINDRGDTTVRRHPFEGVLHNMERRYKETESSAVREELAKF ISNRSCASCSGTRLRREARYVFVENTTLPEISELSIGHALSFFQNMKLSGQRAQIAEKILKEIGDRLKFLVNVGLNYLSL SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLIHLRNLGNTVIVVEHDEDAIRAADHVIDI GPGAGVHGGEVVAEGTVDDIMAAPASLTGQFLSGKRSIAIPEKRVSADPSKVLKLIGATGNNLKDVTLTLPVGLFSCITG VSGSGKSTLINDTLYSIAQRQLNGATITEPAPYREIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGVPE SRTRGYTPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDHCKGKRYNRETLEIKYKGKSIHEVLAMTIEEAREFF DAVPALARKLQTLIDVGLSYICLGQSATTLSGGEAQRVKLSRELSKRGTGQTLYILDEPTTGLHFADIQQLLAVLHQLRD QGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECAASHTARFLKPMLQRKPQTV
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=940, Percent_Identity=90.9574468085106, Blast_Score=1764, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 104257; Mature: 104257
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNIEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY CCCCEECCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC HHHHHHHHCCCCCCHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC PDHDVPLAAQTVSQMVDNVISQPEGRRLMLLAPVVKDRKGEHTKILENLAAQGYIRARID CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECHHHCCCCCHHHHHHHHHHCCEEEEEEC GEVCDLSDPPKLELQKKHTIEVVVDRFKVREDLAQRLAESFETALALSGGTAVVADMDDP CCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEECCCCH HVEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQFFDPDRVLQNPEL HHHHHHHHCCCCCCCCCCHHHHCCCHHEECCCCCCCCCCCCCCCHHHHCCHHHHHCCCCC SLAGGAIRGWDRRNFYYFQMLRSLAEHYKFDIEAPFNSLDSAVQQAVLYGSGKDTIEFKY EECCCCCCCCCCCCHHHHHHHHHHHHHCEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEE INDRGDTTVRRHPFEGVLHNMERRYKETESSAVREELAKFISNRSCASCSGTRLRREARY ECCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCEEE VFVENTTLPEISELSIGHALSFFQNMKLSGQRAQIAEKILKEIGDRLKFLVNVGLNYLSL EEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLIHLRNLGNT CCCCHHCCCCCHHHHHHHHHHCCHHEEHHHEECCCCCCCCCCCHHHHHHHHHHHHCCCCE VIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGTVDDIMAAPASLTGQFLSGKRSIAI EEEEECCCHHHHHHHCEEECCCCCCCCCCCEEECCCHHHHHHCCHHHHHHHHCCCCCCCC PEKRVSADPSKVLKLIGATGNNLKDVTLTLPVGLFSCITGVSGSGKSTLINDTLYSIAQR CHHHCCCCHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCEEHHHHHHHHHHH QLNGATITEPAPYREIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGVPE HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCC SRTRGYTPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDHCKGKRYNRETLEIKY CCCCCCCCCEEEEEECCCEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEE KGKSIHEVLAMTIEEAREFFDAVPALARKLQTLIDVGLSYICLGQSATTLSGGEAQRVKL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHH SRELSKRGTGQTLYILDEPTTGLHFADIQQLLAVLHQLRDQGNTIVVIEHNLDVIKTADW HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCE IVDLGPEGGSGGGEILVSGTPETVAECAASHTARFLKPMLQRKPQTV EEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MDNIEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY CCCCEECCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC HHHHHHHHCCCCCCHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC PDHDVPLAAQTVSQMVDNVISQPEGRRLMLLAPVVKDRKGEHTKILENLAAQGYIRARID CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECHHHCCCCCHHHHHHHHHHCCEEEEEEC GEVCDLSDPPKLELQKKHTIEVVVDRFKVREDLAQRLAESFETALALSGGTAVVADMDDP CCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEECCCCH HVEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQFFDPDRVLQNPEL HHHHHHHHCCCCCCCCCCHHHHCCCHHEECCCCCCCCCCCCCCCHHHHCCHHHHHCCCCC SLAGGAIRGWDRRNFYYFQMLRSLAEHYKFDIEAPFNSLDSAVQQAVLYGSGKDTIEFKY EECCCCCCCCCCCCHHHHHHHHHHHHHCEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEE INDRGDTTVRRHPFEGVLHNMERRYKETESSAVREELAKFISNRSCASCSGTRLRREARY ECCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCEEE VFVENTTLPEISELSIGHALSFFQNMKLSGQRAQIAEKILKEIGDRLKFLVNVGLNYLSL EEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLIHLRNLGNT CCCCHHCCCCCHHHHHHHHHHCCHHEEHHHEECCCCCCCCCCCHHHHHHHHHHHHCCCCE VIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGTVDDIMAAPASLTGQFLSGKRSIAI EEEEECCCHHHHHHHCEEECCCCCCCCCCCEEECCCHHHHHHCCHHHHHHHHCCCCCCCC PEKRVSADPSKVLKLIGATGNNLKDVTLTLPVGLFSCITGVSGSGKSTLINDTLYSIAQR CHHHCCCCHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCEEHHHHHHHHHHH QLNGATITEPAPYREIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGVPE HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCC SRTRGYTPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDHCKGKRYNRETLEIKY CCCCCCCCCEEEEEECCCEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEE KGKSIHEVLAMTIEEAREFFDAVPALARKLQTLIDVGLSYICLGQSATTLSGGEAQRVKL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHH SRELSKRGTGQTLYILDEPTTGLHFADIQQLLAVLHQLRDQGNTIVVIEHNLDVIKTADW HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCE IVDLGPEGGSGGGEILVSGTPETVAECAASHTARFLKPMLQRKPQTV EEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11586360; 12142430 [H]