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The map label for this gene is ppdD [H]

Identifier: 170025713

GI number: 170025713

Start: 3844851

End: 3845315

Strand: Direct

Name: ppdD [H]

Synonym: YPK_3498

Alternate gene names: 170025713

Gene position: 3844851-3845315 (Clockwise)

Preceding gene: 170025712

Following gene: 170025714

Centisome position: 81.99

GC content: 44.73

Gene sequence:

>465_bases
ATGGCTAAACATCAGGGTTTAACATTACAGAAAGGTTTTACATTAATTGAATTGATGGTTGCGGTTGCTATCATTGCAGT
CCTCAGTGGTATTGGCATTCCCTCATATCAACGTTATATCCAAAAAGCAGCACTCACCGACATGCTACAGGCCATCGTCC
CCTACAAGATGGCGGTAGAACTTTGTGCTCTTGAGCAATCCAACCTTGATAGCTGCAACGCTGGCAGTAATGGGATCCCC
GCAGGGCAAGTATCGCGTTATATCAATGCAATAAATATTGCCAAAGGTGTTATTACATTAAGTGGCCAGCATACGCTTAC
TGGCCTGACATTGGCGATATCACCAACCCGAAACAGCAACGGAAATTTAGTCTGGGCCAGAACATGTACGGCAACAGATA
GTGCCATGACTGATAGTTGTAAAGCGGTATTCCGTTTCAATGATAAGGCCCCATCAAATGGCTGA

Upstream 100 bases:

>100_bases
TATCCGTCAATACGCCCCGCAATTCGGCACAAAGCCCCTGTTGGTATGAATTAAAAAACGGCACCCTGCCTCCAGTTTCT
TAAACACATGGAGGGGTAAA

Downstream 100 bases:

>100_bases
ATTTATAGTGTCCTCATTTGAAACAATTAGTGATGAATTACACCTTCTCTGTCGGCGTTATCGGGCAGTGGCACTCACTC
TTGATGGTAAAAGCCTTTCG

Product: putative major pilin subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MAKHQGLTLQKGFTLIELMVAVAIIAVLSGIGIPSYQRYIQKAALTDMLQAIVPYKMAVELCALEQSNLDSCNAGSNGIP
AGQVSRYINAINIAKGVITLSGQHTLTGLTLAISPTRNSNGNLVWARTCTATDSAMTDSCKAVFRFNDKAPSNG

Sequences:

>Translated_154_residues
MAKHQGLTLQKGFTLIELMVAVAIIAVLSGIGIPSYQRYIQKAALTDMLQAIVPYKMAVELCALEQSNLDSCNAGSNGIP
AGQVSRYINAINIAKGVITLSGQHTLTGLTLAISPTRNSNGNLVWARTCTATDSAMTDSCKAVFRFNDKAPSNG
>Mature_153_residues
AKHQGLTLQKGFTLIELMVAVAIIAVLSGIGIPSYQRYIQKAALTDMLQAIVPYKMAVELCALEQSNLDSCNAGSNGIPA
GQVSRYINAINIAKGVITLSGQHTLTGLTLAISPTRNSNGNLVWARTCTATDSAMTDSCKAVFRFNDKAPSNG

Specific function: Not yet known [H]

COG id: COG4969

COG function: function code NU; Tfp pilus assembly protein, major pilin PilA

Gene ontology:

Cell location: Fimbrium [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-Me-Phe pilin family [H]

Homologues:

Organism=Escherichia coli, GI1786297, Length=141, Percent_Identity=56.7375886524823, Blast_Score=176, Evalue=7e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012902
- InterPro:   IPR001120 [H]

Pfam domain/function: PF07963 N_methyl [H]

EC number: NA

Molecular weight: Translated: 16288; Mature: 16157

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKHQGLTLQKGFTLIELMVAVAIIAVLSGIGIPSYQRYIQKAALTDMLQAIVPYKMAVE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LCALEQSNLDSCNAGSNGIPAGQVSRYINAINIAKGVITLSGQHTLTGLTLAISPTRNSN
HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEECCCCEEEEEEEEEECCCCCC
GNLVWARTCTATDSAMTDSCKAVFRFNDKAPSNG
CCEEEEEECCCCCHHHHHHHHHHEEECCCCCCCC
>Mature Secondary Structure 
AKHQGLTLQKGFTLIELMVAVAIIAVLSGIGIPSYQRYIQKAALTDMLQAIVPYKMAVE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LCALEQSNLDSCNAGSNGIPAGQVSRYINAINIAKGVITLSGQHTLTGLTLAISPTRNSN
HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEECCCCEEEEEEEEEECCCCCC
GNLVWARTCTATDSAMTDSCKAVFRFNDKAPSNG
CCEEEEEECCCCCHHHHHHHHHHEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7959070; 8202364; 9278503 [H]