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The map label for this gene is araD [H]

Identifier: 170025610

GI number: 170025610

Start: 3726264

End: 3726959

Strand: Reverse

Name: araD [H]

Synonym: YPK_3395

Alternate gene names: 170025610

Gene position: 3726959-3726264 (Counterclockwise)

Preceding gene: 170025611

Following gene: 170025609

Centisome position: 79.48

GC content: 51.01

Gene sequence:

>696_bases
ATGTTAGAACAGTTAAAACAACAGGTCTTTGAGGCTAACTTGGCACTCCCCAAATATAAGTTGGTGACATTCACGTGGGG
GAATGTCAGCGGCATTGATCGCGAACATGGATTGGTGGTGATTAAGCCCTCTGGCGTTGAATATGATGTCATGAGCGTCA
ATGACATGGTGGTGGTCGATTTAGCAACCGGCAAGGTCGTGGAAGGGGATAAAAAACCCTCGTCGGATACGGATACCCAT
CTGGTGTTATATCGAGCTTTCGCTGAGATTGGCGGCATTGTTCATACGCACTCACGTCATGCCACGATTTGGGCGCAGGC
GGGCAAATCATTATCTGCATTGGGAACCACCCACGCGGACTATTTTTACGGGCCGATCCCTTGCACCCGCTTGATGACCG
AGGCAGAAATTACCGGTGATTATGAGCATGAGACCGGTAAGGTGATTGTGGAGACTTTCGCTGAACAGGGGCTGCGAGCG
GCAGACATTCCGGCCGTCTTGGTCAATGGTCACGGCCCCTTCGCGTGGGGGAGCAATGCGGCTAATGCAGTACACAATGC
CGTGGTGTTAGAAGAGATAGCCTATATGAATCTGTTTACTCATCAGCTAACGCCCGGCGTAGGAGATATGCAGCAGACGT
TGTTGGATAAGCATTATTTGCGTAAGCATGGGGCTGCGGCGTATTACGGCCAATAA

Upstream 100 bases:

>100_bases
TTTTTAAGCAAAGGCGATTAGTTAAATAACGTCATTCGAATACCGAATGATGTTTTTCATTATCGCCTGCCCATCTGAAT
ACTATTTCATGAGGTGCACG

Downstream 100 bases:

>100_bases
ATCCCCTTCGTCCTTGACGCTACAGCGTTGTTAGCTGCGTTCACTTACCCGAATCACTTACTAATGTAAGCTCATCGGGA
TGCGTTCTCTTGCTGCCTGG

Product: L-ribulose-5-phosphate 4-epimerase

Products: NA

Alternate protein names: Phosphoribulose isomerase [H]

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MLEQLKQQVFEANLALPKYKLVTFTWGNVSGIDREHGLVVIKPSGVEYDVMSVNDMVVVDLATGKVVEGDKKPSSDTDTH
LVLYRAFAEIGGIVHTHSRHATIWAQAGKSLSALGTTHADYFYGPIPCTRLMTEAEITGDYEHETGKVIVETFAEQGLRA
ADIPAVLVNGHGPFAWGSNAANAVHNAVVLEEIAYMNLFTHQLTPGVGDMQQTLLDKHYLRKHGAAAYYGQ

Sequences:

>Translated_231_residues
MLEQLKQQVFEANLALPKYKLVTFTWGNVSGIDREHGLVVIKPSGVEYDVMSVNDMVVVDLATGKVVEGDKKPSSDTDTH
LVLYRAFAEIGGIVHTHSRHATIWAQAGKSLSALGTTHADYFYGPIPCTRLMTEAEITGDYEHETGKVIVETFAEQGLRA
ADIPAVLVNGHGPFAWGSNAANAVHNAVVLEEIAYMNLFTHQLTPGVGDMQQTLLDKHYLRKHGAAAYYGQ
>Mature_231_residues
MLEQLKQQVFEANLALPKYKLVTFTWGNVSGIDREHGLVVIKPSGVEYDVMSVNDMVVVDLATGKVVEGDKKPSSDTDTH
LVLYRAFAEIGGIVHTHSRHATIWAQAGKSLSALGTTHADYFYGPIPCTRLMTEAEITGDYEHETGKVIVETFAEQGLRA
ADIPAVLVNGHGPFAWGSNAANAVHNAVVLEEIAYMNLFTHQLTPGVGDMQQTLLDKHYLRKHGAAAYYGQ

Specific function: L-arabinose catabolism; third step. [C]

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. AraD/FucA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786247, Length=231, Percent_Identity=73.5930735930736, Blast_Score=361, Evalue=1e-101,
Organism=Escherichia coli, GI1790008, Length=231, Percent_Identity=72.7272727272727, Blast_Score=351, Evalue=3e-98,
Organism=Escherichia coli, GI1790642, Length=230, Percent_Identity=60.4347826086956, Blast_Score=290, Evalue=4e-80,

Paralogues:

None

Copy number: 136 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303
- InterPro:   IPR004661 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: =5.1.3.4 [H]

Molecular weight: Translated: 25235; Mature: 25235

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEQLKQQVFEANLALPKYKLVTFTWGNVSGIDREHGLVVIKPSGVEYDVMSVNDMVVVD
CHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCEEEEEECCCEEEEE
LATGKVVEGDKKPSSDTDTHLVLYRAFAEIGGIVHTHSRHATIWAQAGKSLSALGTTHAD
ECCCCEEECCCCCCCCCCHHHHHHHHHHHHCCEEEECCCCEEEEECCCCCHHHHCCCCCC
YFYGPIPCTRLMTEAEITGDYEHETGKVIVETFAEQGLRAADIPAVLVNGHGPFAWGSNA
CEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCH
ANAVHNAVVLEEIAYMNLFTHQLTPGVGDMQQTLLDKHYLRKHGAAAYYGQ
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLEQLKQQVFEANLALPKYKLVTFTWGNVSGIDREHGLVVIKPSGVEYDVMSVNDMVVVD
CHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCEEEEEECCCEEEEE
LATGKVVEGDKKPSSDTDTHLVLYRAFAEIGGIVHTHSRHATIWAQAGKSLSALGTTHAD
ECCCCEEECCCCCCCCCCHHHHHHHHHHHHCCEEEECCCCEEEEECCCCCHHHHCCCCCC
YFYGPIPCTRLMTEAEITGDYEHETGKVIVETFAEQGLRAADIPAVLVNGHGPFAWGSNA
CEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCH
ANAVHNAVVLEEIAYMNLFTHQLTPGVGDMQQTLLDKHYLRKHGAAAYYGQ
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3549454; 2261080; 2251150; 1630901; 9278503; 2034216; 2217198; 11732895 [H]