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The map label for this gene is amaB [H]

Identifier: 170025541

GI number: 170025541

Start: 3644817

End: 3646100

Strand: Reverse

Name: amaB [H]

Synonym: YPK_3324

Alternate gene names: 170025541

Gene position: 3646100-3644817 (Counterclockwise)

Preceding gene: 170025542

Following gene: 170025538

Centisome position: 77.75

GC content: 56.54

Gene sequence:

>1284_bases
ATGGGCGTAACTCTGCCGGATATTGAGGCTGAACAGGCCGCATTACAGGTCTTGGCCCGTTGTGACGTATTGGCGGCAAT
CAGTGAATCCCCCGAAGGGCTGACTCGGGTCTATCTATCCCCTGAACATTTACGGGCAAATCGGCAAGTCGGTGAATGGA
TGCAAGCGGTTGGTATGCAGGTTTGGCAGGATACCGTGGGGAATATTTGTGGCCGTTATGAAGGGCGACAACCGGATGCC
CCCGCCATCTTGTTAGGTTCTCATCTGGATACGGTGCGCAATGCGGGCCGCTATGATGGCATGTTAGGGGTATTAACTGC
GCTGGAGGTCGTGGGGTACTTACATCGTCATCAGCAACGTTTACCGGTCGCCATTGAAGTGATTGGTTTTGCTGATGAAG
AGGGAACGCGGTTTGGCATCACCCTGCTTGGCAGTAAAGGGGTGACGGGGTGTTGGCCTGTGGAGTGGTTAAATACGACC
GATGCCGATGGCATCAGTGTCGCGCAAGCGATGGTTCGTGCCGGTTTAGATCCAATGGACATCGGGCAATCTGCGCGTGC
AGCCAATGCCTTCTGCGCCTATCTTGAACTGCATATTGAGCAAGGGCCGTGTTTAGAAAAAGCGGGTTTGGCGCTGGGTG
TGGTGACGGATATTAATGGCGCGCGCCGTTTACAGTGTCAGTTTACCGGGTTGGCGGGCCATGCGGGGACCGTACCGATG
GGGCAACGGCAAGATGCATTGGCCGGTGCCGCTGAATGGATGTGTGCCGTAGAGGCGTTGACTGCGGCTCAGGGGGAGCA
TTTAGTGGCGACGGTAGGGACGTTGACGTGTCTGCCCGGAGCGGTGAATGTGATCCCCGGTCAAGTGAGGCTGACACTGG
ATATTCGCGGCCCAAATGACCGTGGGGTGAATGATTTATTGACCCGTCTATTGGCTGAGGCTGAAGCGATCGCCACGCGT
CGTGGCATAACGTTTACCGCCGAAGGGTTTTACCGTATCAAGGCAACGGCTTGTGATAGTGCTTTGCAGCAGTGCATCAG
CCAGAGTATCAGCCAGGTGCAGGGCCGTTGTTTAGCGCTGCCCAGTGGCGCGGGCCATGATGCGATAGCCATGGCGGAGT
GCTGGCCAGTCGGGATGCTATTTGTCCGCTGTAAAGGCGGCGTCAGCCATCATCCAGATGAGTCCGTCACGAGTAGTGAT
GTTGCGGTGGCGATTCAGGCGTATCTGGAGGCTGTTCTTACGTCTCCTTCGTCCCCTTCGTCCTTGACGCCGCAGCGGTG
TTAG

Upstream 100 bases:

>100_bases
ATGTCTATCAGGTGGATAGTGCTCATCAGGCGGATAGTGCTCATCAGGCGGATAGTGCTCAAAGGAATAGCGATCATGCT
CAACTGAATGGAGCGAATTG

Downstream 100 bases:

>100_bases
CGGCTCTCACTCGCCTGAATCACTGACTGATGTCAGCTCATCAGGACTCATTCGTTTGCTGCCTTGCTGCAACGCCAATG
ACTTTGGGGACCCGTGCTGG

Product: allantoate amidohydrolase

Products: NA

Alternate protein names: L-carbamoylase [H]

Number of amino acids: Translated: 427; Mature: 426

Protein sequence:

>427_residues
MGVTLPDIEAEQAALQVLARCDVLAAISESPEGLTRVYLSPEHLRANRQVGEWMQAVGMQVWQDTVGNICGRYEGRQPDA
PAILLGSHLDTVRNAGRYDGMLGVLTALEVVGYLHRHQQRLPVAIEVIGFADEEGTRFGITLLGSKGVTGCWPVEWLNTT
DADGISVAQAMVRAGLDPMDIGQSARAANAFCAYLELHIEQGPCLEKAGLALGVVTDINGARRLQCQFTGLAGHAGTVPM
GQRQDALAGAAEWMCAVEALTAAQGEHLVATVGTLTCLPGAVNVIPGQVRLTLDIRGPNDRGVNDLLTRLLAEAEAIATR
RGITFTAEGFYRIKATACDSALQQCISQSISQVQGRCLALPSGAGHDAIAMAECWPVGMLFVRCKGGVSHHPDESVTSSD
VAVAIQAYLEAVLTSPSSPSSLTPQRC

Sequences:

>Translated_427_residues
MGVTLPDIEAEQAALQVLARCDVLAAISESPEGLTRVYLSPEHLRANRQVGEWMQAVGMQVWQDTVGNICGRYEGRQPDA
PAILLGSHLDTVRNAGRYDGMLGVLTALEVVGYLHRHQQRLPVAIEVIGFADEEGTRFGITLLGSKGVTGCWPVEWLNTT
DADGISVAQAMVRAGLDPMDIGQSARAANAFCAYLELHIEQGPCLEKAGLALGVVTDINGARRLQCQFTGLAGHAGTVPM
GQRQDALAGAAEWMCAVEALTAAQGEHLVATVGTLTCLPGAVNVIPGQVRLTLDIRGPNDRGVNDLLTRLLAEAEAIATR
RGITFTAEGFYRIKATACDSALQQCISQSISQVQGRCLALPSGAGHDAIAMAECWPVGMLFVRCKGGVSHHPDESVTSSD
VAVAIQAYLEAVLTSPSSPSSLTPQRC
>Mature_426_residues
GVTLPDIEAEQAALQVLARCDVLAAISESPEGLTRVYLSPEHLRANRQVGEWMQAVGMQVWQDTVGNICGRYEGRQPDAP
AILLGSHLDTVRNAGRYDGMLGVLTALEVVGYLHRHQQRLPVAIEVIGFADEEGTRFGITLLGSKGVTGCWPVEWLNTTD
ADGISVAQAMVRAGLDPMDIGQSARAANAFCAYLELHIEQGPCLEKAGLALGVVTDINGARRLQCQFTGLAGHAGTVPMG
QRQDALAGAAEWMCAVEALTAAQGEHLVATVGTLTCLPGAVNVIPGQVRLTLDIRGPNDRGVNDLLTRLLAEAEAIATRR
GITFTAEGFYRIKATACDSALQQCISQSISQVQGRCLALPSGAGHDAIAMAECWPVGMLFVRCKGGVSHHPDESVTSSDV
AVAIQAYLEAVLTSPSSPSSLTPQRC

Specific function: Involved In The Anaerobic Utilization Of Allantoin. Converts Allantoate To (S)-Ureidoglycolate And Ammonia. [C]

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20 family [H]

Homologues:

Organism=Escherichia coli, GI1786726, Length=377, Percent_Identity=33.1564986737401, Blast_Score=188, Evalue=7e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010158
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: =3.5.1.87 [H]

Molecular weight: Translated: 45173; Mature: 45042

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS00758 ARGE_DAPE_CPG2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVTLPDIEAEQAALQVLARCDVLAAISESPEGLTRVYLSPEHLRANRQVGEWMQAVGMQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHH
VWQDTVGNICGRYEGRQPDAPAILLGSHLDTVRNAGRYDGMLGVLTALEVVGYLHRHQQR
HHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
LPVAIEVIGFADEEGTRFGITLLGSKGVTGCWPVEWLNTTDADGISVAQAMVRAGLDPMD
CCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHH
IGQSARAANAFCAYLELHIEQGPCLEKAGLALGVVTDINGARRLQCQFTGLAGHAGTVPM
CCCCHHHHHHHEEEEEEEECCCCCHHHCCCEEEEEECCCCCEEEEEEEEEECCCCCCCCC
GQRQDALAGAAEWMCAVEALTAAQGEHLVATVGTLTCLPGAVNVIPGQVRLTLDIRGPND
CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCEECCCEEEEEEEEECCCC
RGVNDLLTRLLAEAEAIATRRGITFTAEGFYRIKATACDSALQQCISQSISQVQGRCLAL
CCHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEHHHHHHHHHHHHHHHHHHHCCEEEEC
PSGAGHDAIAMAECWPVGMLFVRCKGGVSHHPDESVTSSDVAVAIQAYLEAVLTSPSSPS
CCCCCCCCEEHHHHHHHCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
SLTPQRC
CCCCCCC
>Mature Secondary Structure 
GVTLPDIEAEQAALQVLARCDVLAAISESPEGLTRVYLSPEHLRANRQVGEWMQAVGMQ
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHH
VWQDTVGNICGRYEGRQPDAPAILLGSHLDTVRNAGRYDGMLGVLTALEVVGYLHRHQQR
HHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
LPVAIEVIGFADEEGTRFGITLLGSKGVTGCWPVEWLNTTDADGISVAQAMVRAGLDPMD
CCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHH
IGQSARAANAFCAYLELHIEQGPCLEKAGLALGVVTDINGARRLQCQFTGLAGHAGTVPM
CCCCHHHHHHHEEEEEEEECCCCCHHHCCCEEEEEECCCCCEEEEEEEEEECCCCCCCCC
GQRQDALAGAAEWMCAVEALTAAQGEHLVATVGTLTCLPGAVNVIPGQVRLTLDIRGPND
CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCEECCCEEEEEEEEECCCC
RGVNDLLTRLLAEAEAIATRRGITFTAEGFYRIKATACDSALQQCISQSISQVQGRCLAL
CCHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEHHHHHHHHHHHHHHHHHHHCCEEEEC
PSGAGHDAIAMAECWPVGMLFVRCKGGVSHHPDESVTSSDVAVAIQAYLEAVLTSPSSPS
CCCCCCCCEEHHHHHHHCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
SLTPQRC
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9023955; 8285691 [H]