| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is lon [H]
Identifier: 170025449
GI number: 170025449
Start: 3533760
End: 3536114
Strand: Reverse
Name: lon [H]
Synonym: YPK_3232
Alternate gene names: 170025449
Gene position: 3536114-3533760 (Counterclockwise)
Preceding gene: 170025450
Following gene: 170025448
Centisome position: 75.41
GC content: 48.45
Gene sequence:
>2355_bases ATGAACCCTGAGCGTTCCGAACGCATAGAAATCCCCGTATTGCCTCTGCGCGATGTGGTGGTTTATCCGCATATGGTGAT CCCACTATTTGTTGGCCGGGAAAAGTCGATTCGGTGCCTGGAAGCTGCGATGGACCATGATAAAAGAATCATGCTGGTTG CGCAGAAAGAAGCTTCGACCGACGAACCTGGTATCAACGATCTGTTTTCGGTGGGTACCGTAGCCTCGATTTTGCAAATG CTGAAGTTGCCTGACGGCACAGTAAAAGTGTTGGTTGAAGGTTTACAGCGTGCGCGTATCACCACGCTTTCTGACAGTGG CGAGCATTTTGCTGCCCAAGCGGAATACCTTGAATCACCCGTGATGGATGATCGCGAGCAAGAAGTCTTGGTGCGTACCG CGATTAATCAGTTTGAAGGTTATATCAAACTGAACAAAAAAATCCCGCCGGAAGTGCTGGCTTCGCTGCACAGTATTGAT GATGCGGCACGTCTTGCTGATACCATCGCTGCACATATGCCATTGAAGTTAAATGATAAACAAGCTGTTCTGGAAATGTT CGATATCACCGAACGTCTGGAATACTTGATGGCGATGATGGAGTCGGAAATCGATCTGTTACAGGTTGAAAAGCGGATCC GTAATCGTGTTAAAAAACAGATGGAAAAGAGCCAGCGTGAGTACTATCTGAATGAGCAAATGAAAGCGATTCAGAAAGAA CTGGGCGAGATGGACGATACGCCAGACGAGCATGAAGCGCTGAAGCGTAAAATTGAAGCGGCTAAAATGCCGAAAGATGC GCGTGAAAAAACCGAAGCGGAACTGCAAAAACTGAAAATGATGTCGCCAATGTCTGCGGAAGCAACCGTGGTACGTGGTT ACATCGACTGGATGTTGCAGGTTCCTTGGAATAGCCGCAGCAAAGTTAAAAAAGACCTGGTTAAAGCACAAGAAGTTCTG GATACCGACCACTACGGTTTAGAGCGTGTTAAAGATCGTATCTTGGAATATCTCGCAGTCCAGAGCCGGGTCAGCAAAAT TAAAGGGCCAATCCTCTGCTTGGTTGGGCCTCCTGGGGTCGGTAAAACCTCTCTAGGGCAGTCAATTGCTAAGGCAACGG GCCGCCAGTATGTGCGTATGGCATTGGGTGGGGTGCGTGATGAAGCTGAAATCCGTGGTCACCGTCGTACGTATATTGGT TCTATGCCGGGTAAATTGATCCAGAAGATGGCAAAAGTGGGTGTGAAAAACCCACTCTTCCTATTAGATGAGATCGATAA AATGGCATCGGATATGCGCGGAGATCCTGCTTCTGCGCTACTGGAGGTGCTGGATCCAGAACAAAACGTTGCATTTAACG ATCACTACCTGGAAGTGGATTACGATCTCTCGGATGTGATGTTTGTGGCGACCTCTAACTCCATGAATATTCCCGCCCCG TTGCTGGATCGTATGGAAGTTATTCGTCTGTCCGGCTATACCGAAGATGAGAAACTCAATATTGCTAAACAGCATTTGCT GCCAAAACAATTTGAACGCAATGCCATCAAGAAAGGTGAGTTGACCATTGATGACAGCGCCATTATGAGCATTATCCGTT ACTACACCCGTGAAGCTGGGGTGCGTAGTTTGGAACGTGAAATTTCTAAACTGTGTCGTAAGGCGGTAAAAAATCTGCTG ATGGACAAAACGGTTAAGCACATTGAAATCAACGGGGATAACCTAAAAGATTTCCTTGGCGTTCAGAAGGTTGACTACGG TCGTGCCGATACTGAAAACCGCGTAGGTCAGGTAACGGGGCTGGCATGGACTGAAGTGGGTGGTGACTTACTTACTATCG AGACCGCTTGTGTTCCAGGTAAAGGTAAGTTGACTTATACCGGCTCACTGGGTGAAGTGATGCAGGAGTCGATTCAGGCG GCTCTAACCGTGGTACGCGCGCGCGCGGATAAGTTGGGTATCAACCCTGATTTCTATGAAAAACGCGACATCCACGTGCA TGTGCCGGAAGGGGCGACACCTAAAGATGGCCCGAGCGCTGGTATTGCAATGTGCACAGCACTGGTTTCTTGTCTGACGG GTAACCCCGTTCGTGCTGATGTTGCAATGACGGGTGAGATAACCTTACGTGGCTTAGTATTGCCGATTGGCGGTTTGAAA GAGAAATTACTGGCCGCTCACCGTGGTGGGATCAAAGTGGTGTTGATTCCAGATGATAACAAACGTGATCTGGAAGAGAT TCCTGGCAATGTTATAGCTGATCTGGAGATCCACCCGGTTAAACGAATTGACGATGTTTTAGCCATTGCGTTGGAACACC CGGCCTTTGGTGCCCAGCCAGTAGCGCCAAAATAG
Upstream 100 bases:
>100_bases GTCCCCATATACTCAAATACCTATTTAGTGAAACTCGTGATGACTCGTGTTTCACGAGATTTCCAGTAATCTGGCGGAAG CTAAACTAAGAGAGAGCTCT
Downstream 100 bases:
>100_bases TGACGGATCGCAAGAAGTATTGATAAAACTAATGCTGGTAAGTGAAATCCTGCTTGCCAGCTATTTTTTGTGCCGCTAAG TTAGTTCGGCTGTCCGGCAA
Product: DNA-binding ATP-dependent protease La
Products: NA
Alternate protein names: ATP-dependent protease La [H]
Number of amino acids: Translated: 784; Mature: 784
Protein sequence:
>784_residues MNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKRIMLVAQKEASTDEPGINDLFSVGTVASILQM LKLPDGTVKVLVEGLQRARITTLSDSGEHFAAQAEYLESPVMDDREQEVLVRTAINQFEGYIKLNKKIPPEVLASLHSID DAARLADTIAAHMPLKLNDKQAVLEMFDITERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKE LGEMDDTPDEHEALKRKIEAAKMPKDAREKTEAELQKLKMMSPMSAEATVVRGYIDWMLQVPWNSRSKVKKDLVKAQEVL DTDHYGLERVKDRILEYLAVQSRVSKIKGPILCLVGPPGVGKTSLGQSIAKATGRQYVRMALGGVRDEAEIRGHRRTYIG SMPGKLIQKMAKVGVKNPLFLLDEIDKMASDMRGDPASALLEVLDPEQNVAFNDHYLEVDYDLSDVMFVATSNSMNIPAP LLDRMEVIRLSGYTEDEKLNIAKQHLLPKQFERNAIKKGELTIDDSAIMSIIRYYTREAGVRSLEREISKLCRKAVKNLL MDKTVKHIEINGDNLKDFLGVQKVDYGRADTENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQA ALTVVRARADKLGINPDFYEKRDIHVHVPEGATPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGLVLPIGGLK EKLLAAHRGGIKVVLIPDDNKRDLEEIPGNVIADLEIHPVKRIDDVLAIALEHPAFGAQPVAPK
Sequences:
>Translated_784_residues MNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKRIMLVAQKEASTDEPGINDLFSVGTVASILQM LKLPDGTVKVLVEGLQRARITTLSDSGEHFAAQAEYLESPVMDDREQEVLVRTAINQFEGYIKLNKKIPPEVLASLHSID DAARLADTIAAHMPLKLNDKQAVLEMFDITERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKE LGEMDDTPDEHEALKRKIEAAKMPKDAREKTEAELQKLKMMSPMSAEATVVRGYIDWMLQVPWNSRSKVKKDLVKAQEVL DTDHYGLERVKDRILEYLAVQSRVSKIKGPILCLVGPPGVGKTSLGQSIAKATGRQYVRMALGGVRDEAEIRGHRRTYIG SMPGKLIQKMAKVGVKNPLFLLDEIDKMASDMRGDPASALLEVLDPEQNVAFNDHYLEVDYDLSDVMFVATSNSMNIPAP LLDRMEVIRLSGYTEDEKLNIAKQHLLPKQFERNAIKKGELTIDDSAIMSIIRYYTREAGVRSLEREISKLCRKAVKNLL MDKTVKHIEINGDNLKDFLGVQKVDYGRADTENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQA ALTVVRARADKLGINPDFYEKRDIHVHVPEGATPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGLVLPIGGLK EKLLAAHRGGIKVVLIPDDNKRDLEEIPGNVIADLEIHPVKRIDDVLAIALEHPAFGAQPVAPK >Mature_784_residues MNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKRIMLVAQKEASTDEPGINDLFSVGTVASILQM LKLPDGTVKVLVEGLQRARITTLSDSGEHFAAQAEYLESPVMDDREQEVLVRTAINQFEGYIKLNKKIPPEVLASLHSID DAARLADTIAAHMPLKLNDKQAVLEMFDITERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKE LGEMDDTPDEHEALKRKIEAAKMPKDAREKTEAELQKLKMMSPMSAEATVVRGYIDWMLQVPWNSRSKVKKDLVKAQEVL DTDHYGLERVKDRILEYLAVQSRVSKIKGPILCLVGPPGVGKTSLGQSIAKATGRQYVRMALGGVRDEAEIRGHRRTYIG SMPGKLIQKMAKVGVKNPLFLLDEIDKMASDMRGDPASALLEVLDPEQNVAFNDHYLEVDYDLSDVMFVATSNSMNIPAP LLDRMEVIRLSGYTEDEKLNIAKQHLLPKQFERNAIKKGELTIDDSAIMSIIRYYTREAGVRSLEREISKLCRKAVKNLL MDKTVKHIEINGDNLKDFLGVQKVDYGRADTENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQA ALTVVRARADKLGINPDFYEKRDIHVHVPEGATPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGLVLPIGGLK EKLLAAHRGGIKVVLIPDDNKRDLEEIPGNVIADLEIHPVKRIDDVLAIALEHPAFGAQPVAPK
Specific function: ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced
COG id: COG0466
COG function: function code O; ATP-dependent Lon protease, bacterial type
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Lon domain [H]
Homologues:
Organism=Homo sapiens, GI31377667, Length=564, Percent_Identity=45.9219858156028, Blast_Score=508, Evalue=1e-143, Organism=Homo sapiens, GI21396489, Length=624, Percent_Identity=41.5064102564103, Blast_Score=504, Evalue=1e-142, Organism=Escherichia coli, GI1786643, Length=784, Percent_Identity=90.9438775510204, Blast_Score=1451, Evalue=0.0, Organism=Caenorhabditis elegans, GI17505831, Length=696, Percent_Identity=38.5057471264368, Blast_Score=487, Evalue=1e-137, Organism=Caenorhabditis elegans, GI17556486, Length=785, Percent_Identity=32.8662420382166, Blast_Score=412, Evalue=1e-115, Organism=Saccharomyces cerevisiae, GI6319449, Length=678, Percent_Identity=39.9705014749263, Blast_Score=480, Evalue=1e-136, Organism=Drosophila melanogaster, GI221513036, Length=680, Percent_Identity=43.5294117647059, Blast_Score=534, Evalue=1e-151, Organism=Drosophila melanogaster, GI24666867, Length=680, Percent_Identity=43.5294117647059, Blast_Score=534, Evalue=1e-151,
Paralogues:
None
Copy number: 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR003959 - InterPro: IPR008269 - InterPro: IPR004815 - InterPro: IPR003111 - InterPro: IPR008268 - InterPro: IPR001984 - InterPro: IPR015947 - InterPro: IPR020568 [H]
Pfam domain/function: PF00004 AAA; PF02190 LON; PF05362 Lon_C [H]
EC number: =3.4.21.53 [H]
Molecular weight: Translated: 87376; Mature: 87376
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: PS01046 LON_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKRIMLVAQKEAST CCCCCCCEEECCCCCHHHHHHCCHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCCC DEPGINDLFSVGTVASILQMLKLPDGTVKVLVEGLQRARITTLSDSGEHFAAQAEYLESP CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHCCC VMDDREQEVLVRTAINQFEGYIKLNKKIPPEVLASLHSIDDAARLADTIAAHMPLKLNDK CCCCHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCH QAVLEMFDITERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKE HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGEMDDTPDEHEALKRKIEAAKMPKDAREKTEAELQKLKMMSPMSAEATVVRGYIDWMLQ HCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEE VPWNSRSKVKKDLVKAQEVLDTDHYGLERVKDRILEYLAVQSRVSKIKGPILCLVGPPGV CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC GKTSLGQSIAKATGRQYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLF CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHCCCCCHHHHHHHHHCCCCCCHH LLDEIDKMASDMRGDPASALLEVLDPEQNVAFNDHYLEVDYDLSDVMFVATSNSMNIPAP HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEECCCEEEEECCCCCEEEEEECCCCCCCHH LLDRMEVIRLSGYTEDEKLNIAKQHLLPKQFERNAIKKGELTIDDSAIMSIIRYYTREAG HHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHH VRSLEREISKLCRKAVKNLLMDKTVKHIEINGDNLKDFLGVQKVDYGRADTENRVGQVTG HHHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCCHHHHHCCHHCCCCCCCCCCCCHHHCC LAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARADKLGINPDFYE EEHHHCCCCEEEEEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC KRDIHVHVPEGATPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGLVLPIGGLK CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEEECCCCHH EKLLAAHRGGIKVVLIPDDNKRDLEEIPGNVIADLEIHPVKRIDDVLAIALEHPAFGAQP HHHHHHHCCCEEEEEECCCCCHHHHHCCCCEEECCEECCHHHHHHHHHHHHCCCCCCCCC VAPK CCCC >Mature Secondary Structure MNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKRIMLVAQKEAST CCCCCCCEEECCCCCHHHHHHCCHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCCC DEPGINDLFSVGTVASILQMLKLPDGTVKVLVEGLQRARITTLSDSGEHFAAQAEYLESP CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHCCC VMDDREQEVLVRTAINQFEGYIKLNKKIPPEVLASLHSIDDAARLADTIAAHMPLKLNDK CCCCHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCH QAVLEMFDITERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKE HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGEMDDTPDEHEALKRKIEAAKMPKDAREKTEAELQKLKMMSPMSAEATVVRGYIDWMLQ HCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEE VPWNSRSKVKKDLVKAQEVLDTDHYGLERVKDRILEYLAVQSRVSKIKGPILCLVGPPGV CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC GKTSLGQSIAKATGRQYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLF CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHCCCCCHHHHHHHHHCCCCCCHH LLDEIDKMASDMRGDPASALLEVLDPEQNVAFNDHYLEVDYDLSDVMFVATSNSMNIPAP HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEECCCEEEEECCCCCEEEEEECCCCCCCHH LLDRMEVIRLSGYTEDEKLNIAKQHLLPKQFERNAIKKGELTIDDSAIMSIIRYYTREAG HHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHH VRSLEREISKLCRKAVKNLLMDKTVKHIEINGDNLKDFLGVQKVDYGRADTENRVGQVTG HHHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCCHHHHHCCHHCCCCCCCCCCCCHHHCC LAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRARADKLGINPDFYE EEHHHCCCCEEEEEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC KRDIHVHVPEGATPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGLVLPIGGLK CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEEECCCCHH EKLLAAHRGGIKVVLIPDDNKRDLEEIPGNVIADLEIHPVKRIDDVLAIALEHPAFGAQP HHHHHHHCCCEEEEEECCCCCHHHHHCCCCEEECCEECCHHHHHHHHHHHHCCCCCCCCC VAPK CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA