Click here to switch to the map view.

The map label for this gene is 170025336

Identifier: 170025336

GI number: 170025336

Start: 3413154

End: 3414560

Strand: Reverse

Name: 170025336

Synonym: YPK_3117

Alternate gene names: NA

Gene position: 3414560-3413154 (Counterclockwise)

Preceding gene: 170025337

Following gene: 170025335

Centisome position: 72.81

GC content: 52.74

Gene sequence:

>1407_bases
ATGTCACTGATCAGCAATGCACTTTCTGATTTATTAGGTACCGGCGGCGATAGCTGGCAGTGGTCAGAGCATCTTCACCC
CGCCTCTTTCCGTGGGGTTCCCTTTGCGGTCATCAGTGCGGAAGGTGTTTTCGGTCGCCGGCAGGCCATTCATGAATACC
CTTATCGAGATACCGCATGGATTGAGGATCTGGGCCGCGCCACTCGTCGCCTGACCATCCGCGGTTTCCTTATTCAGAGT
AGCGGTCTTTATACCGCGCCGGATGTCATGACTCAGCGTGATTCACTGATTGCTGCATGTGAAATGCCTGATGCGGGAAC
ACTAGTACACCCAACACTCGGTGAAATGACGGTCAGCATCCCAGAAAGTGGTCTCCGCTTGAATGAGGGGGCCGAGTCCG
GGCGTGTTTTTGAATTTACGCTGACCATTATTGAGTCGGGTTTACGGGTATTTTCTGTTACCAGTTCAGCTGATGCGGTT
TCGTCTATTCAGTCATCATGGTTTGGCCTGGCCTCAAAGTCCGTCGCCACCTTTATTGCCACGGTCAAAGGTGAGATCCG
TTCTGTCACTCAGACCATAAGAACGCTAAAAAGTACCGCAGCATTCTGGGTCAGCATGGTGAATTCAACCACCAGTGAGG
CGACAAATCTCGGGAATATCCTCCGTTCAACACTTGGGCGTGATCGTTATGGCCGCTTTAATCACGGCACTGTAGGCGGC
AGCATATCAGGGGCCACAGCATCAGTTAGCACGCAGCGCGATACAACGAACCTGTCCGCGCTGGTAGCCCAAAAAATGGC
GGTATCGGTCGAGGGGCGGGAGTCAGTAAATAGAGCTGCAGAGACATTACAAGCGGCCTCAGCAGTGGAGGCTCATGCAA
ATGCTGTTCTTGCTGTAGTGAATGCCATCTTGGTCAGCGGAGCTAGCACCCTTGATTTAATCCGCATGATGCAAGAGTTA
ACGGCAATCACTGACGACACCTTTCGACCCAATCCCGGTGACAGCAATACCGCCGCTGCCAGTTATCAGCTCATTATTGT
GCTGTGTGCGGGCGCGATGGTATTTGCCGCGTCGCAATATCAACCGGAAAGCTATGACGATGCGGTCGATATATTGACGC
GGGTCTGTGGTGTGGTAGATGGTGCCGCGCTTTCAGCGGCTGATACAGGCAATGATGAGGTGTATCAGTCATTAATTATG
TTACGTGAGTCCATCGTCACTCTGTTACAGCAGACGGGCGCTAACCTGTCTCGTGTGGAGATAGTCAATTTTAACCGCTC
ACTGCCCGCGCTAAATCTGGCCAACCGGCTCTATCAGGATGCGCGACGGGGTGATGCGCTGGTGAAAATGGCGGTTCCCG
TTCATCCGGCATTTATGCCCCTTCGATTTAAGGCGCTGAACTCATGA

Upstream 100 bases:

>100_bases
TATAACTATTGGATAAATAAATAAGTCACAGCGTTAATAAAGAATTACTGAAAATATCACCCGCCATCGTGCGGGTTTTT
TCATTTCTGGAGGGGTGTAA

Downstream 100 bases:

>100_bases
GTGATGATTTGACACTGCGTATTGGCAATAAGCTGATCACGGGCTGGGATAATATCCGCGTCACTCGCAGCATAGAGCGA
CTACCCAGCGATTTCAGCTT

Product: DNA circulation family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MSLISNALSDLLGTGGDSWQWSEHLHPASFRGVPFAVISAEGVFGRRQAIHEYPYRDTAWIEDLGRATRRLTIRGFLIQS
SGLYTAPDVMTQRDSLIAACEMPDAGTLVHPTLGEMTVSIPESGLRLNEGAESGRVFEFTLTIIESGLRVFSVTSSADAV
SSIQSSWFGLASKSVATFIATVKGEIRSVTQTIRTLKSTAAFWVSMVNSTTSEATNLGNILRSTLGRDRYGRFNHGTVGG
SISGATASVSTQRDTTNLSALVAQKMAVSVEGRESVNRAAETLQAASAVEAHANAVLAVVNAILVSGASTLDLIRMMQEL
TAITDDTFRPNPGDSNTAAASYQLIIVLCAGAMVFAASQYQPESYDDAVDILTRVCGVVDGAALSAADTGNDEVYQSLIM
LRESIVTLLQQTGANLSRVEIVNFNRSLPALNLANRLYQDARRGDALVKMAVPVHPAFMPLRFKALNS

Sequences:

>Translated_468_residues
MSLISNALSDLLGTGGDSWQWSEHLHPASFRGVPFAVISAEGVFGRRQAIHEYPYRDTAWIEDLGRATRRLTIRGFLIQS
SGLYTAPDVMTQRDSLIAACEMPDAGTLVHPTLGEMTVSIPESGLRLNEGAESGRVFEFTLTIIESGLRVFSVTSSADAV
SSIQSSWFGLASKSVATFIATVKGEIRSVTQTIRTLKSTAAFWVSMVNSTTSEATNLGNILRSTLGRDRYGRFNHGTVGG
SISGATASVSTQRDTTNLSALVAQKMAVSVEGRESVNRAAETLQAASAVEAHANAVLAVVNAILVSGASTLDLIRMMQEL
TAITDDTFRPNPGDSNTAAASYQLIIVLCAGAMVFAASQYQPESYDDAVDILTRVCGVVDGAALSAADTGNDEVYQSLIM
LRESIVTLLQQTGANLSRVEIVNFNRSLPALNLANRLYQDARRGDALVKMAVPVHPAFMPLRFKALNS
>Mature_467_residues
SLISNALSDLLGTGGDSWQWSEHLHPASFRGVPFAVISAEGVFGRRQAIHEYPYRDTAWIEDLGRATRRLTIRGFLIQSS
GLYTAPDVMTQRDSLIAACEMPDAGTLVHPTLGEMTVSIPESGLRLNEGAESGRVFEFTLTIIESGLRVFSVTSSADAVS
SIQSSWFGLASKSVATFIATVKGEIRSVTQTIRTLKSTAAFWVSMVNSTTSEATNLGNILRSTLGRDRYGRFNHGTVGGS
ISGATASVSTQRDTTNLSALVAQKMAVSVEGRESVNRAAETLQAASAVEAHANAVLAVVNAILVSGASTLDLIRMMQELT
AITDDTFRPNPGDSNTAAASYQLIIVLCAGAMVFAASQYQPESYDDAVDILTRVCGVVDGAALSAADTGNDEVYQSLIML
RESIVTLLQQTGANLSRVEIVNFNRSLPALNLANRLYQDARRGDALVKMAVPVHPAFMPLRFKALNS

Specific function: Unknown

COG id: COG4228

COG function: function code R; Mu-like prophage DNA circulation protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To phage Mu protein N [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009826
- ProDom:   PD332323 [H]

Pfam domain/function: PF07157 DNA_circ_N [H]

EC number: NA

Molecular weight: Translated: 50035; Mature: 49904

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLISNALSDLLGTGGDSWQWSEHLHPASFRGVPFAVISAEGVFGRRQAIHEYPYRDTAW
CCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCHHH
IEDLGRATRRLTIRGFLIQSSGLYTAPDVMTQRDSLIAACEMPDAGTLVHPTLGEMTVSI
HHHHHHHHHEEEEEEEEEECCCCEECCHHHHCCCCEEEEECCCCCCCEECCCCCCEEEEC
PESGLRLNEGAESGRVFEFTLTIIESGLRVFSVTSSADAVSSIQSSWFGLASKSVATFIA
CCCCCEECCCCCCCCEEEEEHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
TVKGEIRSVTQTIRTLKSTAAFWVSMVNSTTSEATNLGNILRSTLGRDRYGRFNHGTVGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
SISGATASVSTQRDTTNLSALVAQKMAVSVEGRESVNRAAETLQAASAVEAHANAVLAVV
CCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NAILVSGASTLDLIRMMQELTAITDDTFRPNPGDSNTAAASYQLIIVLCAGAMVFAASQY
HHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
QPESYDDAVDILTRVCGVVDGAALSAADTGNDEVYQSLIMLRESIVTLLQQTGANLSRVE
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
IVNFNRSLPALNLANRLYQDARRGDALVKMAVPVHPAFMPLRFKALNS
EEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCC
>Mature Secondary Structure 
SLISNALSDLLGTGGDSWQWSEHLHPASFRGVPFAVISAEGVFGRRQAIHEYPYRDTAW
CHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCHHH
IEDLGRATRRLTIRGFLIQSSGLYTAPDVMTQRDSLIAACEMPDAGTLVHPTLGEMTVSI
HHHHHHHHHEEEEEEEEEECCCCEECCHHHHCCCCEEEEECCCCCCCEECCCCCCEEEEC
PESGLRLNEGAESGRVFEFTLTIIESGLRVFSVTSSADAVSSIQSSWFGLASKSVATFIA
CCCCCEECCCCCCCCEEEEEHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
TVKGEIRSVTQTIRTLKSTAAFWVSMVNSTTSEATNLGNILRSTLGRDRYGRFNHGTVGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
SISGATASVSTQRDTTNLSALVAQKMAVSVEGRESVNRAAETLQAASAVEAHANAVLAVV
CCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NAILVSGASTLDLIRMMQELTAITDDTFRPNPGDSNTAAASYQLIIVLCAGAMVFAASQY
HHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
QPESYDDAVDILTRVCGVVDGAALSAADTGNDEVYQSLIMLRESIVTLLQQTGANLSRVE
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
IVNFNRSLPALNLANRLYQDARRGDALVKMAVPVHPAFMPLRFKALNS
EEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]