Click here to switch to the map view.

The map label for this gene is psiF [H]

Identifier: 170025169

GI number: 170025169

Start: 3245652

End: 3245987

Strand: Direct

Name: psiF [H]

Synonym: YPK_2947

Alternate gene names: 170025169

Gene position: 3245652-3245987 (Clockwise)

Preceding gene: 170025168

Following gene: 170025170

Centisome position: 69.21

GC content: 49.7

Gene sequence:

>336_bases
ATGCGTCTATTCCCCCTATGGTTGTTATCGGCTGGGTTATTGCTGAGTGCCAATGTGATGGCCGCAGATCCGCCGAAAAC
GCCCTCACCAGCCCAAGCGGCGCAGCAGCAGAAGATGACCGATTGTAATCAACAGGCCAGCACTCAATCACTCAAGGGTG
ATGAGCGGAAAAACTTTATGAGTCAATGTCTGAAAGCACAGACAGCACCTGATGGAAAAGCCCTGACACCTCAGCAACAG
AAAATGAAAAGTTGTAATGCCGAGGCAGCCCAAAAAATGCTAAAAGGTGATGAGCGCAAGACCTTTATGAGCACTTGCCT
CAAGAAAGCGGCCTAA

Upstream 100 bases:

>100_bases
CGCTTAACTGCATCTGTCAGGCGGCCGTACTGACGTTCTGCCCGCCTTTTAGACCTCTGACATTGATTACTAAACCTCAT
GACTATAAAAAGGAACGCCT

Downstream 100 bases:

>100_bases
CCCATTTCGAGGCAGGGGTCTGTTGATATGGGGTATTTAATGCCCATATATTGATAAGTTGCCTATTTGGCAGAATCGAT
TCGGCTATTGGTCTTACGTT

Product: PsiF repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MRLFPLWLLSAGLLLSANVMAADPPKTPSPAQAAQQQKMTDCNQQASTQSLKGDERKNFMSQCLKAQTAPDGKALTPQQQ
KMKSCNAEAAQKMLKGDERKTFMSTCLKKAA

Sequences:

>Translated_111_residues
MRLFPLWLLSAGLLLSANVMAADPPKTPSPAQAAQQQKMTDCNQQASTQSLKGDERKNFMSQCLKAQTAPDGKALTPQQQ
KMKSCNAEAAQKMLKGDERKTFMSTCLKKAA
>Mature_111_residues
MRLFPLWLLSAGLLLSANVMAADPPKTPSPAQAAQQQKMTDCNQQASTQSLKGDERKNFMSQCLKAQTAPDGKALTPQQQ
KMKSCNAEAAQKMLKGDERKTFMSTCLKKAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081731, Length=112, Percent_Identity=54.4642857142857, Blast_Score=111, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011690 [H]

Pfam domain/function: PF07769 PsiF_repeat [H]

EC number: NA

Molecular weight: Translated: 12103; Mature: 12103

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
6.3 %Met     (Translated Protein)
9.9 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
6.3 %Met     (Mature Protein)
9.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLFPLWLLSAGLLLSANVMAADPPKTPSPAQAAQQQKMTDCNQQASTQSLKGDERKNFM
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
SQCLKAQTAPDGKALTPQQQKMKSCNAEAAQKMLKGDERKTFMSTCLKKAA
HHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MRLFPLWLLSAGLLLSANVMAADPPKTPSPAQAAQQQKMTDCNQQASTQSLKGDERKNFM
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
SQCLKAQTAPDGKALTPQQQKMKSCNAEAAQKMLKGDERKTFMSTCLKKAA
HHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]