| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
Click here to switch to the map view.
The map label for this gene is 170025040
Identifier: 170025040
GI number: 170025040
Start: 3103644
End: 3105137
Strand: Reverse
Name: 170025040
Synonym: YPK_2816
Alternate gene names: NA
Gene position: 3105137-3103644 (Counterclockwise)
Preceding gene: 170025041
Following gene: 170025039
Centisome position: 66.22
GC content: 42.24
Gene sequence:
>1494_bases ATGACTGAGATATTTGATTTTGACCTGGCTATCGATGCTCAGGTCACTGAATCAGTGAGTCAAATGAATAAGGCAATAAA AGCATTAGTGCCTCAATTTAATGAATTACGTAAAAGTGTGGAAGCGATTAATCACGTTATCCCCTTGTTCATTATGCGGA TAGAAGGATTTCATAATGAATACGGCAACATAAGTGGGGGGACCAGAACATCTTCGGACAATAGCTTAATGACAAGTATT GCTAACATTGCTAATAGCTATATAACAGGAGGGAAATTTAATCTTATTTATACGATTGGTTCTGAATTTGCCAGTGCAGT CAGCCAGGCAGCCAGCGAAGCCCGAACGGTAAATAAAGTCACGCAAAATGCGGGTGCACCTATTGATCAATTCAGTCAAC TATATGGGGCGATGCAAATTCGTGGTACAGACCAAGAAGCCGCAATAAAATCGACTGAACGGCTCTATAACACGTTTAAT AATATACTTTGGCGACGTGATGAGCAGGGTTGGAACCTGTTACAAGATTATGGTTTAGACATTGCCAGTAATAAAAATGG AACAGTGGATGCTCCTACTACGTTGACGAATATGGCTAAAGAATTTCCACAAATGGCACCACAGGACCAACACCAACTGA TCCATATTCTCAGAATGGACTCTAATGCTATTGAGTTATTGCGCGAGGGGGGGCAGCTAACGGATTTACTGGCTAAATCA AGACAATATGGCCTAACGATTGATCCTCAACTTAATGCCCGATTAACTGAGTTAAACATACGAACAAATGAATTAAGTAT GGCTTGGGATGGCCTCAAAGGTAAGGCATCGAATAAGCTTTACGATGTATTGTTCTCTGACGGTACGATCGCCGACGGAA TAGGTGGCCTTACCGACATGATAACTTATGGCCCAGATAACTTTTCGATTATGCGTACCCTAGGGGTAACCCAAGGGATT GATACGGATAAAATGCGTCGGGGTTATAACGATGCTGATTTTTATCAGCAACTTAATTTTTATGAAAAAGCCATGCTTAG TGCGGGACTGATGACCGATGGATTTCGTAAAAAATATCAGGGAAATAATGAAGAGAAAAATGCGACTTCGGCAGTTAATG CAGTGGCAATTAGTACTGTGGCCATTAATAGCGACATTCCTGAATTCAATCCAGGAAAAGATCTGTTTAATTTTGGGGCT GAAACCGAAAATACTTGGAAAAATAACCGGCTTACAGATATTCACGCGGAAGAACCCTCATCCGACTTTGGCTACAATGA TATTGATATCAATCCTGTCAATCCATCACTTATTTCCCCTGAATCAGCGGGTGACTTTAACGGCAACGCTATTGCTGATG TCATTGCCACCGCAATGCAAAATAACCGGGTGCAAATTGAGCTGACATTAATCGACAGCCGGACTGGTGAAACTTCGCTG ATCCAAGCGCAGGGCGGGGCCAGAATTGCCCACGCCATGGAACTCGGTCATTAA
Upstream 100 bases:
>100_bases TATAGCTGGGGGCCGGGCGATGCCTGGTCCCTGACCTACAGTGGATTAAGGTGGTGGTGCCAGCAGGCCGAGCGGATTAA TAATATTAAGGCTGGCAAAA
Downstream 100 bases:
>100_bases TTTAAGTAAAAACGCAATGTAGTCAACCCGCCCCTGTGGGTTTCAGACTGCTGACAAACCCCGATGACGCGATCTTGAAC GGTGAGGATAGGCAGAGGAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 497; Mature: 496
Protein sequence:
>497_residues MTEIFDFDLAIDAQVTESVSQMNKAIKALVPQFNELRKSVEAINHVIPLFIMRIEGFHNEYGNISGGTRTSSDNSLMTSI ANIANSYITGGKFNLIYTIGSEFASAVSQAASEARTVNKVTQNAGAPIDQFSQLYGAMQIRGTDQEAAIKSTERLYNTFN NILWRRDEQGWNLLQDYGLDIASNKNGTVDAPTTLTNMAKEFPQMAPQDQHQLIHILRMDSNAIELLREGGQLTDLLAKS RQYGLTIDPQLNARLTELNIRTNELSMAWDGLKGKASNKLYDVLFSDGTIADGIGGLTDMITYGPDNFSIMRTLGVTQGI DTDKMRRGYNDADFYQQLNFYEKAMLSAGLMTDGFRKKYQGNNEEKNATSAVNAVAISTVAINSDIPEFNPGKDLFNFGA ETENTWKNNRLTDIHAEEPSSDFGYNDIDINPVNPSLISPESAGDFNGNAIADVIATAMQNNRVQIELTLIDSRTGETSL IQAQGGARIAHAMELGH
Sequences:
>Translated_497_residues MTEIFDFDLAIDAQVTESVSQMNKAIKALVPQFNELRKSVEAINHVIPLFIMRIEGFHNEYGNISGGTRTSSDNSLMTSI ANIANSYITGGKFNLIYTIGSEFASAVSQAASEARTVNKVTQNAGAPIDQFSQLYGAMQIRGTDQEAAIKSTERLYNTFN NILWRRDEQGWNLLQDYGLDIASNKNGTVDAPTTLTNMAKEFPQMAPQDQHQLIHILRMDSNAIELLREGGQLTDLLAKS RQYGLTIDPQLNARLTELNIRTNELSMAWDGLKGKASNKLYDVLFSDGTIADGIGGLTDMITYGPDNFSIMRTLGVTQGI DTDKMRRGYNDADFYQQLNFYEKAMLSAGLMTDGFRKKYQGNNEEKNATSAVNAVAISTVAINSDIPEFNPGKDLFNFGA ETENTWKNNRLTDIHAEEPSSDFGYNDIDINPVNPSLISPESAGDFNGNAIADVIATAMQNNRVQIELTLIDSRTGETSL IQAQGGARIAHAMELGH >Mature_496_residues TEIFDFDLAIDAQVTESVSQMNKAIKALVPQFNELRKSVEAINHVIPLFIMRIEGFHNEYGNISGGTRTSSDNSLMTSIA NIANSYITGGKFNLIYTIGSEFASAVSQAASEARTVNKVTQNAGAPIDQFSQLYGAMQIRGTDQEAAIKSTERLYNTFNN ILWRRDEQGWNLLQDYGLDIASNKNGTVDAPTTLTNMAKEFPQMAPQDQHQLIHILRMDSNAIELLREGGQLTDLLAKSR QYGLTIDPQLNARLTELNIRTNELSMAWDGLKGKASNKLYDVLFSDGTIADGIGGLTDMITYGPDNFSIMRTLGVTQGID TDKMRRGYNDADFYQQLNFYEKAMLSAGLMTDGFRKKYQGNNEEKNATSAVNAVAISTVAINSDIPEFNPGKDLFNFGAE TENTWKNNRLTDIHAEEPSSDFGYNDIDINPVNPSLISPESAGDFNGNAIADVIATAMQNNRVQIELTLIDSRTGETSLI QAQGGARIAHAMELGH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54694; Mature: 54562
Theoretical pI: Translated: 4.49; Mature: 4.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEIFDFDLAIDAQVTESVSQMNKAIKALVPQFNELRKSVEAINHVIPLFIMRIEGFHNE CCCEEEECEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC YGNISGGTRTSSDNSLMTSIANIANSYITGGKFNLIYTIGSEFASAVSQAASEARTVNKV CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHH TQNAGAPIDQFSQLYGAMQIRGTDQEAAIKSTERLYNTFNNILWRRDEQGWNLLQDYGLD HHHCCCCHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCE IASNKNGTVDAPTTLTNMAKEFPQMAPQDQHQLIHILRMDSNAIELLREGGQLTDLLAKS EECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHEEHHHHCCCHHHHHHHCCCHHHHHHHHH RQYGLTIDPQLNARLTELNIRTNELSMAWDGLKGKASNKLYDVLFSDGTIADGIGGLTDM HCCCEEECCCCCCEEEEEEEEECHHHEEECCCCCCCCCCEEEEEECCCCCCCCCCCHHHH ITYGPDNFSIMRTLGVTQGIDTDKMRRGYNDADFYQQLNFYEKAMLSAGLMTDGFRKKYQ HEECCCCHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GNNEEKNATSAVNAVAISTVAINSDIPEFNPGKDLFNFGAETENTWKNNRLTDIHAEEPS CCCCCHHHHHHHHHHEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEEECCCCC SDFGYNDIDINPVNPSLISPESAGDFNGNAIADVIATAMQNNRVQIELTLIDSRTGETSL CCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEECCCCCCEE IQAQGGARIAHAMELGH EEECCCCHHHHHHHCCC >Mature Secondary Structure TEIFDFDLAIDAQVTESVSQMNKAIKALVPQFNELRKSVEAINHVIPLFIMRIEGFHNE CCEEEECEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC YGNISGGTRTSSDNSLMTSIANIANSYITGGKFNLIYTIGSEFASAVSQAASEARTVNKV CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHH TQNAGAPIDQFSQLYGAMQIRGTDQEAAIKSTERLYNTFNNILWRRDEQGWNLLQDYGLD HHHCCCCHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCE IASNKNGTVDAPTTLTNMAKEFPQMAPQDQHQLIHILRMDSNAIELLREGGQLTDLLAKS EECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHEEHHHHCCCHHHHHHHCCCHHHHHHHHH RQYGLTIDPQLNARLTELNIRTNELSMAWDGLKGKASNKLYDVLFSDGTIADGIGGLTDM HCCCEEECCCCCCEEEEEEEEECHHHEEECCCCCCCCCCEEEEEECCCCCCCCCCCHHHH ITYGPDNFSIMRTLGVTQGIDTDKMRRGYNDADFYQQLNFYEKAMLSAGLMTDGFRKKYQ HEECCCCHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GNNEEKNATSAVNAVAISTVAINSDIPEFNPGKDLFNFGAETENTWKNNRLTDIHAEEPS CCCCCHHHHHHHHHHEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEEECCCCC SDFGYNDIDINPVNPSLISPESAGDFNGNAIADVIATAMQNNRVQIELTLIDSRTGETSL CCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEECCCCCCEE IQAQGGARIAHAMELGH EEECCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA