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The map label for this gene is ycbB [H]

Identifier: 170024879

GI number: 170024879

Start: 2915322

End: 2917178

Strand: Reverse

Name: ycbB [H]

Synonym: YPK_2654

Alternate gene names: 170024879

Gene position: 2917178-2915322 (Counterclockwise)

Preceding gene: 170024880

Following gene: 170024878

Centisome position: 62.21

GC content: 49.6

Gene sequence:

>1857_bases
ATGTCGATGATAAAAAGAAAGTTACAACGCGCACTCGTTTTATACTGCGCTTTAGTTTGCAGCCTGATGACCGTGTTTAC
TGCATCAGCCGCTGCTCCCGTAATGCCCGTGGATTCATCTTCAGCTTTGCCAGCACGTGGTGCAACCATGTCCGTGGCTC
AAAGTCGTTCGCAATTATTGGCCGCGCTTCCAAAAGATGTCGTGCCACTCTATGCTGCGGAATTAGCGTCATTATATGCG
GCGAACCAAATGCAGCCTATGTGGCAAGACCGGGTTGCTGTTCAACGTTTCCAGCAACAGTTAGCGGAGGTTGGGCTTTC
AGGCATTCAACCGCAGTTTATGCAATGGGTTAAATGGTTGAGCGAGCCAGAAATCACCGGTATGGCGCGTGATATTATTC
TATCGGATGCGATGCTGGGTTATTTACACTTTATTTCCGGTGTCGGTGCTAATGGCAGTGTTTGGTTATACAGTAATGTG
CCTTACAAAATGGCCATGCCGCCTGCAGCAGTTTTAAACGCCTGGCAGAAAGCGGTCAATGAAGGCTCGACAGCCTCTTA
TCTGGCGTCGTTGGCTCCGCAGCATCCGCAATACGATAAAATGCAACAGGCGTTGAAGTTGATGCTAGCAGACCGACGCC
CGTGGCCACAGATGCCTACTGGGCCAAGTTTACGGCCGGGGCAACTTAGCGACGATATCCCTGCATTGCGGGAAATCCTT
GACCGAACGGGTATGTTGCACCCAACAACCCCCGTGAAAGCGCCAGAGGTGATCCCTGTGGAGAACCCTACGGTGGCCGT
CGTTAATGACGATCTCTCTGTTGATGAAGAAAAAAATCGGACTCAGACCAACAGCTTGGTGGTCAGCCCATCAGCCGTCT
CTGTCCCTGAGAGCGATGATGCGGCACCCGCACCGATGCCTCCCGTGAGCGTGGTCACGTTAACTGACAATATCTATACT
CCTGAGTTGGTAGAAGCCGTTAAACGCTTCCAGCAATGGCAGGGGCTCACTGATGACGGTGTTATCGGCCCCCGTACCCG
CGAATGGTTGAATGTCTCGCCACAAACGCGGGCCACGTTATTGGCATTGAATATCCAACGATTACGTATTTTACCGGGGC
ATGTTGATAACGGCATTATGGTTAATATCCCAAATTATTCTCTGAATTATTATAAAGATGGGGCCGAAGTGCTTTCATCT
CGGGTGATTGTTGGCCGTCCAAGTCGTAAAACGCCCCTGATGAGTAGTGCGTTGAATAATGTGGTGGTGAACCCGCCGTG
GAACGTGCCGACCTCATTGGTACGGCAGGATATCGTGCCCAAAGCACGTAACGATGCCGGGTATTTTCAGCGTAATGGCT
ATACCGTGTTGTCCGGATGGAGTAATGATGCTGAAGTGATCAATCCTTCAATGATTGACTGGAGTATTATCTCGCCGAAT
AACTTCCCTTACCGTTTGCGTCAGGCACCAGGTGCTAATAACTCGTTAGGGCGGTTCAAATTTAACATGCCAAGTTCTGA
TGCTATCTATTTACATGACACGCCGAATCATGGCCTGTTCCAAAAGGACATTCGCGCCCTGAGTTCAGGTTGTGTCCGTG
TCAATAAAGCGTCTGATTTAGCGAACATGCTGCTGCAAGATGCTGGCTGGAATGATGCACGGGTCTCTTCCAAGGTAAAA
CAAGGTGATACCACCTACGTCAATATCCGCCAGCGCGTTCCGGTGCAATTGTATTATCTGACAGCATGGGTTGCGGAAGA
CGGTAAACCGCAGTTTAGAACAGATATTTACAATTATGATAAAATGGTGCGATCTGGTGCACAAATCTCACAGCAGGCTG
AGTTTTTATTGCAATAA

Upstream 100 bases:

>100_bases
AATTGACAGTCAAAATGTCACTTCTGTTTGTATAATAAAATAAGAAGCAATGGTACCGACAAACTATGACGTACTGAGAT
GAGCATACAAGGGGCATGGA

Downstream 100 bases:

>100_bases
ATGCAGTAAAACTCAATAACTAATGGTCTTAAATACCGGGCTATCTTGTGGGCGCTTGTTCGTAAGCGCCCTGTCACCTG
ACCTTAACGCACAGTGAATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 618; Mature: 617

Protein sequence:

>618_residues
MSMIKRKLQRALVLYCALVCSLMTVFTASAAAPVMPVDSSSALPARGATMSVAQSRSQLLAALPKDVVPLYAAELASLYA
ANQMQPMWQDRVAVQRFQQQLAEVGLSGIQPQFMQWVKWLSEPEITGMARDIILSDAMLGYLHFISGVGANGSVWLYSNV
PYKMAMPPAAVLNAWQKAVNEGSTASYLASLAPQHPQYDKMQQALKLMLADRRPWPQMPTGPSLRPGQLSDDIPALREIL
DRTGMLHPTTPVKAPEVIPVENPTVAVVNDDLSVDEEKNRTQTNSLVVSPSAVSVPESDDAAPAPMPPVSVVTLTDNIYT
PELVEAVKRFQQWQGLTDDGVIGPRTREWLNVSPQTRATLLALNIQRLRILPGHVDNGIMVNIPNYSLNYYKDGAEVLSS
RVIVGRPSRKTPLMSSALNNVVVNPPWNVPTSLVRQDIVPKARNDAGYFQRNGYTVLSGWSNDAEVINPSMIDWSIISPN
NFPYRLRQAPGANNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDAGWNDARVSSKVK
QGDTTYVNIRQRVPVQLYYLTAWVAEDGKPQFRTDIYNYDKMVRSGAQISQQAEFLLQ

Sequences:

>Translated_618_residues
MSMIKRKLQRALVLYCALVCSLMTVFTASAAAPVMPVDSSSALPARGATMSVAQSRSQLLAALPKDVVPLYAAELASLYA
ANQMQPMWQDRVAVQRFQQQLAEVGLSGIQPQFMQWVKWLSEPEITGMARDIILSDAMLGYLHFISGVGANGSVWLYSNV
PYKMAMPPAAVLNAWQKAVNEGSTASYLASLAPQHPQYDKMQQALKLMLADRRPWPQMPTGPSLRPGQLSDDIPALREIL
DRTGMLHPTTPVKAPEVIPVENPTVAVVNDDLSVDEEKNRTQTNSLVVSPSAVSVPESDDAAPAPMPPVSVVTLTDNIYT
PELVEAVKRFQQWQGLTDDGVIGPRTREWLNVSPQTRATLLALNIQRLRILPGHVDNGIMVNIPNYSLNYYKDGAEVLSS
RVIVGRPSRKTPLMSSALNNVVVNPPWNVPTSLVRQDIVPKARNDAGYFQRNGYTVLSGWSNDAEVINPSMIDWSIISPN
NFPYRLRQAPGANNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDAGWNDARVSSKVK
QGDTTYVNIRQRVPVQLYYLTAWVAEDGKPQFRTDIYNYDKMVRSGAQISQQAEFLLQ
>Mature_617_residues
SMIKRKLQRALVLYCALVCSLMTVFTASAAAPVMPVDSSSALPARGATMSVAQSRSQLLAALPKDVVPLYAAELASLYAA
NQMQPMWQDRVAVQRFQQQLAEVGLSGIQPQFMQWVKWLSEPEITGMARDIILSDAMLGYLHFISGVGANGSVWLYSNVP
YKMAMPPAAVLNAWQKAVNEGSTASYLASLAPQHPQYDKMQQALKLMLADRRPWPQMPTGPSLRPGQLSDDIPALREILD
RTGMLHPTTPVKAPEVIPVENPTVAVVNDDLSVDEEKNRTQTNSLVVSPSAVSVPESDDAAPAPMPPVSVVTLTDNIYTP
ELVEAVKRFQQWQGLTDDGVIGPRTREWLNVSPQTRATLLALNIQRLRILPGHVDNGIMVNIPNYSLNYYKDGAEVLSSR
VIVGRPSRKTPLMSSALNNVVVNPPWNVPTSLVRQDIVPKARNDAGYFQRNGYTVLSGWSNDAEVINPSMIDWSIISPNN
FPYRLRQAPGANNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDAGWNDARVSSKVKQ
GDTTYVNIRQRVPVQLYYLTAWVAEDGKPQFRTDIYNYDKMVRSGAQISQQAEFLLQ

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=644, Percent_Identity=53.7267080745342, Blast_Score=672, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 68272; Mature: 68141

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMIKRKLQRALVLYCALVCSLMTVFTASAAAPVMPVDSSSALPARGATMSVAQSRSQLL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHH
AALPKDVVPLYAAELASLYAANQMQPMWQDRVAVQRFQQQLAEVGLSGIQPQFMQWVKWL
HHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
SEPEITGMARDIILSDAMLGYLHFISGVGANGSVWLYSNVPYKMAMPPAAVLNAWQKAVN
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCHHHHHHHHHHHHC
EGSTASYLASLAPQHPQYDKMQQALKLMLADRRPWPQMPTGPSLRPGQLSDDIPALREIL
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
DRTGMLHPTTPVKAPEVIPVENPTVAVVNDDLSVDEEKNRTQTNSLVVSPSAVSVPESDD
HHCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCHHCCCCCCCEEECCCCCCCCCCCC
AAPAPMPPVSVVTLTDNIYTPELVEAVKRFQQWQGLTDDGVIGPRTREWLNVSPQTRATL
CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCHHHEE
LALNIQRLRILPGHVDNGIMVNIPNYSLNYYKDGAEVLSSRVIVGRPSRKTPLMSSALNN
EEEEHHHHEEECCCCCCCEEEECCCCCCEEECCHHHHHHCCEEEECCCCCCCHHHHHHCC
VVVNPPWNVPTSLVRQDIVPKARNDAGYFQRNGYTVLSGWSNDAEVINPSMIDWSIISPN
EEECCCCCCCHHHHHHHCCCCCCCCCCCEECCCEEEEECCCCCCHHCCCCEEEEEEECCC
NFPYRLRQAPGANNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDL
CCCEEEECCCCCCCCCCEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHCCEEECCHHHH
ANMLLQDAGWNDARVSSKVKQGDTTYVNIRQRVPVQLYYLTAWVAEDGKPQFRTDIYNYD
HHHHHHCCCCCHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEECCCCCCCHHHHHHHHH
KMVRSGAQISQQAEFLLQ
HHHHCCHHHHHHHHHHCC
>Mature Secondary Structure 
SMIKRKLQRALVLYCALVCSLMTVFTASAAAPVMPVDSSSALPARGATMSVAQSRSQLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHH
AALPKDVVPLYAAELASLYAANQMQPMWQDRVAVQRFQQQLAEVGLSGIQPQFMQWVKWL
HHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
SEPEITGMARDIILSDAMLGYLHFISGVGANGSVWLYSNVPYKMAMPPAAVLNAWQKAVN
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCHHHHHHHHHHHHC
EGSTASYLASLAPQHPQYDKMQQALKLMLADRRPWPQMPTGPSLRPGQLSDDIPALREIL
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
DRTGMLHPTTPVKAPEVIPVENPTVAVVNDDLSVDEEKNRTQTNSLVVSPSAVSVPESDD
HHCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCHHCCCCCCCEEECCCCCCCCCCCC
AAPAPMPPVSVVTLTDNIYTPELVEAVKRFQQWQGLTDDGVIGPRTREWLNVSPQTRATL
CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCHHHEE
LALNIQRLRILPGHVDNGIMVNIPNYSLNYYKDGAEVLSSRVIVGRPSRKTPLMSSALNN
EEEEHHHHEEECCCCCCCEEEECCCCCCEEECCHHHHHHCCEEEECCCCCCCHHHHHHCC
VVVNPPWNVPTSLVRQDIVPKARNDAGYFQRNGYTVLSGWSNDAEVINPSMIDWSIISPN
EEECCCCCCCHHHHHHHCCCCCCCCCCCEECCCEEEEECCCCCCHHCCCCEEEEEEECCC
NFPYRLRQAPGANNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDL
CCCEEEECCCCCCCCCCEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHCCEEECCHHHH
ANMLLQDAGWNDARVSSKVKQGDTTYVNIRQRVPVQLYYLTAWVAEDGKPQFRTDIYNYD
HHHHHHCCCCCHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEECCCCCCCHHHHHHHHH
KMVRSGAQISQQAEFLLQ
HHHHCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]