Click here to switch to the map view.

The map label for this gene is 170024808

Identifier: 170024808

GI number: 170024808

Start: 2838599

End: 2839966

Strand: Reverse

Name: 170024808

Synonym: YPK_2583

Alternate gene names: NA

Gene position: 2839966-2838599 (Counterclockwise)

Preceding gene: 170024809

Following gene: 170024806

Centisome position: 60.56

GC content: 57.68

Gene sequence:

>1368_bases
ATGGCAGGTAATACCGAGCGTCTGCTGAAAACCGGTGGCGACCCGCGCGCACTGGCGGATTTCACCGCACTGCGGGGTGA
ATTAAATAAACTGGCCCACCCGGCCCGCCCGGATGTTGACTGGGCGCGGGTTGAGCAACTGTGTCTGGCGCTATTTCGCC
AGAACGGCGTTGAGTTACAGACCGCCGTTGATTTTACCCTGGCACGAACGCACACCGCCGGGTTGGCGGGTTTATGTGAA
GGGCTGGAACTGTTGGCGGGGTTGGTCTGCCATCAATGGAGTGGGTTATGGCCACCGCAAACGCATGTCCGGGTGGCGTT
ACTGGCCTGGCTGAGTGACCGGCTGCAACAAGTGTGGCGCACCATGACGTTATGCTACGGTGACCTGGCGCAGGTGTACC
GGGCAGAGCGGGCGCTGGAACAGTTGTGCGCACAGTTGCAAACGCTGGAGCTCAAACATTTGTGCAAGCTGGACGGGGTT
CGTTTGATGCTGCATAACGCGGCGCAGCGGTTGGAAAGTACCGAGGCCGTGTCTGGCCTTGCGAAACCACGGGGTGCCTC
TGAACCGCCCGAGTCGCTGCGATTTGCCTCTGTCCCGGTCAGTGAACCACTGGTGTATATTATCAGCGAACCGGCCCCGC
CACCTGTTCAGGTGGTTTTACCTGCCTCACCTCCGCGCTGGAAGGCGGGCCACGGTTTTGCCGCGGGGTTATCGTTGATG
GCGGTGCTGATGGCCGGCAGTTTCGTTATCTGGCAGTCGGTATCATCGGATCCCGTGAGGGAAACATTGCTGGCCACTGC
CAGTCCTTTGCCGATACCGCTGAGTGCTAACTCAATAGCTGAACTGAAAAAACAGGCTTCAGATGTTGAGTGGGCACGTC
TGGCGGAACCGGTGTTGCAAGCCAGTGCGACGCAGTTAGATCAACTGGCACAGTTACCGCCGTTATGGGCGCAGGCTCGG
GGGGATGCCTTGCTATCTCAGGCGCAACAACTGTGGCCCGCGAGTCAAGAGGTCAAACGGTTGAGCACTTTGTGGCAGCA
ACAGCGAGAAGCCGGTGCTGCGCCCTTGGTAGAGTTGAAACACTATGCATTGGCGCAAGACCGTTTGCGGCAACTGGCAG
AACGACTGAATAGTCTGGATGAGAAAAAACGCGGATATATGACGGTCTCCGAACTGAAATCTGCCGTCTTTGCTATCCAA
CAGCCGCTGGCACAGGCCGTGCCACTGGAAGAACTGCTGCGGCAATATCAGGAACAATTAGAATCAGGGCAAACTCCATC
CTCAGCACTGCGTCAACAGATTGACAGCCGGTTTAGTCAACTGCTGAACCGCTATGCGTTGCTGGTCGTACCTCCTGGCG
TTCAGTAA

Upstream 100 bases:

>100_bases
GTTTATGCCTGAGGGTAGGGTGCTGATGCGCCATCTTAAACAACAACACTACCTCAATCAGCGGGAGTCATTTTGATGCG
GGTTCCGGGAAGACAACCAC

Downstream 100 bases:

>100_bases
ACACTCGGTTGCCAGGGAGGATTATGGGGCAGAAGCGGTGATTACAGCGTGAAGTAGGGTTAGTTGTACTGGGGCGGCAG
GCGCAATATTTGAATATTAT

Product: ImpA domain-containing protein

Products: NA

Alternate protein names: ImpA Domain-Containing Protein; OmpA/MotB Domain-Containing Protein; Type VI Secretion System Protein VasL

Number of amino acids: Translated: 455; Mature: 454

Protein sequence:

>455_residues
MAGNTERLLKTGGDPRALADFTALRGELNKLAHPARPDVDWARVEQLCLALFRQNGVELQTAVDFTLARTHTAGLAGLCE
GLELLAGLVCHQWSGLWPPQTHVRVALLAWLSDRLQQVWRTMTLCYGDLAQVYRAERALEQLCAQLQTLELKHLCKLDGV
RLMLHNAAQRLESTEAVSGLAKPRGASEPPESLRFASVPVSEPLVYIISEPAPPPVQVVLPASPPRWKAGHGFAAGLSLM
AVLMAGSFVIWQSVSSDPVRETLLATASPLPIPLSANSIAELKKQASDVEWARLAEPVLQASATQLDQLAQLPPLWAQAR
GDALLSQAQQLWPASQEVKRLSTLWQQQREAGAAPLVELKHYALAQDRLRQLAERLNSLDEKKRGYMTVSELKSAVFAIQ
QPLAQAVPLEELLRQYQEQLESGQTPSSALRQQIDSRFSQLLNRYALLVVPPGVQ

Sequences:

>Translated_455_residues
MAGNTERLLKTGGDPRALADFTALRGELNKLAHPARPDVDWARVEQLCLALFRQNGVELQTAVDFTLARTHTAGLAGLCE
GLELLAGLVCHQWSGLWPPQTHVRVALLAWLSDRLQQVWRTMTLCYGDLAQVYRAERALEQLCAQLQTLELKHLCKLDGV
RLMLHNAAQRLESTEAVSGLAKPRGASEPPESLRFASVPVSEPLVYIISEPAPPPVQVVLPASPPRWKAGHGFAAGLSLM
AVLMAGSFVIWQSVSSDPVRETLLATASPLPIPLSANSIAELKKQASDVEWARLAEPVLQASATQLDQLAQLPPLWAQAR
GDALLSQAQQLWPASQEVKRLSTLWQQQREAGAAPLVELKHYALAQDRLRQLAERLNSLDEKKRGYMTVSELKSAVFAIQ
QPLAQAVPLEELLRQYQEQLESGQTPSSALRQQIDSRFSQLLNRYALLVVPPGVQ
>Mature_454_residues
AGNTERLLKTGGDPRALADFTALRGELNKLAHPARPDVDWARVEQLCLALFRQNGVELQTAVDFTLARTHTAGLAGLCEG
LELLAGLVCHQWSGLWPPQTHVRVALLAWLSDRLQQVWRTMTLCYGDLAQVYRAERALEQLCAQLQTLELKHLCKLDGVR
LMLHNAAQRLESTEAVSGLAKPRGASEPPESLRFASVPVSEPLVYIISEPAPPPVQVVLPASPPRWKAGHGFAAGLSLMA
VLMAGSFVIWQSVSSDPVRETLLATASPLPIPLSANSIAELKKQASDVEWARLAEPVLQASATQLDQLAQLPPLWAQARG
DALLSQAQQLWPASQEVKRLSTLWQQQREAGAAPLVELKHYALAQDRLRQLAERLNSLDEKKRGYMTVSELKSAVFAIQQ
PLAQAVPLEELLRQYQEQLESGQTPSSALRQQIDSRFSQLLNRYALLVVPPGVQ

Specific function: Unknown

COG id: COG3515

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50024; Mature: 49893

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGNTERLLKTGGDPRALADFTALRGELNKLAHPARPDVDWARVEQLCLALFRQNGVELQ
CCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEH
TAVDFTLARTHTAGLAGLCEGLELLAGLVCHQWSGLWPPQTHVRVALLAWLSDRLQQVWR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
TMTLCYGDLAQVYRAERALEQLCAQLQTLELKHLCKLDGVRLMLHNAAQRLESTEAVSGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKPRGASEPPESLRFASVPVSEPLVYIISEPAPPPVQVVLPASPPRWKAGHGFAAGLSLM
CCCCCCCCCHHHCEECCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCHHHHHHHH
AVLMAGSFVIWQSVSSDPVRETLLATASPLPIPLSANSIAELKKQASDVEWARLAEPVLQ
HHHHHCCHHEECCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
ASATQLDQLAQLPPLWAQARGDALLSQAQQLWPASQEVKRLSTLWQQQREAGAAPLVELK
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
HYALAQDRLRQLAERLNSLDEKKRGYMTVSELKSAVFAIQQPLAQAVPLEELLRQYQEQL
HHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ESGQTPSSALRQQIDSRFSQLLNRYALLVVPPGVQ
HCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCC
>Mature Secondary Structure 
AGNTERLLKTGGDPRALADFTALRGELNKLAHPARPDVDWARVEQLCLALFRQNGVELQ
CCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEH
TAVDFTLARTHTAGLAGLCEGLELLAGLVCHQWSGLWPPQTHVRVALLAWLSDRLQQVWR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
TMTLCYGDLAQVYRAERALEQLCAQLQTLELKHLCKLDGVRLMLHNAAQRLESTEAVSGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKPRGASEPPESLRFASVPVSEPLVYIISEPAPPPVQVVLPASPPRWKAGHGFAAGLSLM
CCCCCCCCCHHHCEECCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCHHHHHHHH
AVLMAGSFVIWQSVSSDPVRETLLATASPLPIPLSANSIAELKKQASDVEWARLAEPVLQ
HHHHHCCHHEECCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
ASATQLDQLAQLPPLWAQARGDALLSQAQQLWPASQEVKRLSTLWQQQREAGAAPLVELK
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
HYALAQDRLRQLAERLNSLDEKKRGYMTVSELKSAVFAIQQPLAQAVPLEELLRQYQEQL
HHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ESGQTPSSALRQQIDSRFSQLLNRYALLVVPPGVQ
HCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA