Click here to switch to the map view.

The map label for this gene is 170024800

Identifier: 170024800

GI number: 170024800

Start: 2828719

End: 2829981

Strand: Direct

Name: 170024800

Synonym: YPK_2575

Alternate gene names: NA

Gene position: 2828719-2829981 (Clockwise)

Preceding gene: 170024799

Following gene: 170024801

Centisome position: 60.32

GC content: 32.07

Gene sequence:

>1263_bases
ATGGATATAAAATTAGAAAAAAAGATAAATATCAACAGTAGAGAGAAAATAGTTATACTTTCCGTGTTACTTATTCTATT
TTTAAGCTGCTTTTTTATTTATTATTTATTCACCAAAGAAAGCGCCCTGCTCGTTCCTCGAGAAAGAGCCATATTCTATA
CTGCTCAATTTGAGCCATATCAAGACGTATTGGTGACACGCGCCATTACGGTACCCAATGAGAGTGTTATTTTATCAAGT
GAAAGAGGAGGTAAAATCATTGAAATAGTCAAGCAATCTGCTGAAAATGTGATAAAAGGCGATGTGATTGCTCGATTATC
TAATTATGACTTTACACTAGAAGCCACATCCAGAATGGCGGATATTATGGAGCAAATAAATAGCCTCCGTAATATGAGAA
TGAGATTAGAACAAGATAGCAGAGATACTCAACTCAGTTTGCAAGAAGCTCAACACCAGATAGATATAATCTCTAAAGAT
TTGAAAAGATATAAAGTACTTGACGAAAAACTCTTGATTGCAAAGTCTGAACTAGAGCGACAGGCCGATAGACTAATAAA
TTGGAAGACTAAGAGTAATATACTACAAAAGCATAATAGTAGGAACCAAAAATCATTCCCTTCTCAATTTAAAAACATAG
ATGAATCGATTATATTACTTGAAAAAATGATGAAAATGATTGAAGTTGGCATTGAGCAACTCGTTATTATTGCACCTATT
GATGGTACATTATCTGTTCTTGATATTGAATTAGGTCAACAAATAAAATCAGGCGAAAAAATATCAGTAATAGACAATTT
AAATTCATATTATTTCAATGTTTATTTCAGTGAAAATTATATCGATAAGATAAAACCTAATACTCAAATTATCGCACAGA
TAAATGGTCAAGATACTCAACTACTGATAGAGTCAGTATCAGCAATAGTAGACAATGGAAAATTCAAAGCAAAGCTTAGG
CCAATTGAATCAGGCATCGCTCATCTTAAACGAGGGCAATCTATTGAAATTCGTATTGCACTACAAGAAGAAAATAATCA
CGTACTATTAGTCCCAACTGAAAGTGTGTTTTCAAATAGCAATGGTGACCATTTTATATATATTTATCAAGATAAATATG
ACCGTGCAATTAAAACAAAAGTTGAAGTTAAACGTCGAAATTCGATTAAAACAGAGATCACATCTGGATTACAGCCAAGT
CAACGCATTGTAAAAATGCCTGATGATAGTGATAAAATAGCAAATATCATAGAGTTTAAATAA

Upstream 100 bases:

>100_bases
TACCTCTATGCCTTTGGAACACTTTTGCTGTTTATGGTGAGTATCGTCAGTGTAATGACCTTGTCACTCATTTTATCGCA
TACCAAAAAGAATAAATAAC

Downstream 100 bases:

>100_bases
TATGCTACATTTACAGAATGCAAAAAAATATTACACAACAAAAGTCATAAAAACCAGAGTCCTAAATAATATAACGCTTT
CTGTAGAGAAAGGAGAGTTT

Product: RND family efflux transporter MFP subunit

Products: NA

Alternate protein names: RND Family Efflux Transporter MFP Subunit; ABC Transporter Permease; Efflux Transporter Rnd Family Mfp Subunit; Efflux Transporter MFP Component RND Family; Efflux Transporter MFP Component RND Family Protein; HlyD Family Secretion Protein; Efflux Transporter; HlyD Family Transporter

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MDIKLEKKININSREKIVILSVLLILFLSCFFIYYLFTKESALLVPRERAIFYTAQFEPYQDVLVTRAITVPNESVILSS
ERGGKIIEIVKQSAENVIKGDVIARLSNYDFTLEATSRMADIMEQINSLRNMRMRLEQDSRDTQLSLQEAQHQIDIISKD
LKRYKVLDEKLLIAKSELERQADRLINWKTKSNILQKHNSRNQKSFPSQFKNIDESIILLEKMMKMIEVGIEQLVIIAPI
DGTLSVLDIELGQQIKSGEKISVIDNLNSYYFNVYFSENYIDKIKPNTQIIAQINGQDTQLLIESVSAIVDNGKFKAKLR
PIESGIAHLKRGQSIEIRIALQEENNHVLLVPTESVFSNSNGDHFIYIYQDKYDRAIKTKVEVKRRNSIKTEITSGLQPS
QRIVKMPDDSDKIANIIEFK

Sequences:

>Translated_420_residues
MDIKLEKKININSREKIVILSVLLILFLSCFFIYYLFTKESALLVPRERAIFYTAQFEPYQDVLVTRAITVPNESVILSS
ERGGKIIEIVKQSAENVIKGDVIARLSNYDFTLEATSRMADIMEQINSLRNMRMRLEQDSRDTQLSLQEAQHQIDIISKD
LKRYKVLDEKLLIAKSELERQADRLINWKTKSNILQKHNSRNQKSFPSQFKNIDESIILLEKMMKMIEVGIEQLVIIAPI
DGTLSVLDIELGQQIKSGEKISVIDNLNSYYFNVYFSENYIDKIKPNTQIIAQINGQDTQLLIESVSAIVDNGKFKAKLR
PIESGIAHLKRGQSIEIRIALQEENNHVLLVPTESVFSNSNGDHFIYIYQDKYDRAIKTKVEVKRRNSIKTEITSGLQPS
QRIVKMPDDSDKIANIIEFK
>Mature_420_residues
MDIKLEKKININSREKIVILSVLLILFLSCFFIYYLFTKESALLVPRERAIFYTAQFEPYQDVLVTRAITVPNESVILSS
ERGGKIIEIVKQSAENVIKGDVIARLSNYDFTLEATSRMADIMEQINSLRNMRMRLEQDSRDTQLSLQEAQHQIDIISKD
LKRYKVLDEKLLIAKSELERQADRLINWKTKSNILQKHNSRNQKSFPSQFKNIDESIILLEKMMKMIEVGIEQLVIIAPI
DGTLSVLDIELGQQIKSGEKISVIDNLNSYYFNVYFSENYIDKIKPNTQIIAQINGQDTQLLIESVSAIVDNGKFKAKLR
PIESGIAHLKRGQSIEIRIALQEENNHVLLVPTESVFSNSNGDHFIYIYQDKYDRAIKTKVEVKRRNSIKTEITSGLQPS
QRIVKMPDDSDKIANIIEFK

Specific function: Unknown

COG id: COG0845

COG function: function code M; Membrane-fusion protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48348; Mature: 48348

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIKLEKKININSREKIVILSVLLILFLSCFFIYYLFTKESALLVPRERAIFYTAQFEPY
CCEEEECEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCH
QDVLVTRAITVPNESVILSSERGGKIIEIVKQSAENVIKGDVIARLSNYDFTLEATSRMA
HHHHHEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCEEEEHHHHHH
DIMEQINSLRNMRMRLEQDSRDTQLSLQEAQHQIDIISKDLKRYKVLDEKLLIAKSELER
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QADRLINWKTKSNILQKHNSRNQKSFPSQFKNIDESIILLEKMMKMIEVGIEQLVIIAPI
HHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCHHEEEEEEEC
DGTLSVLDIELGQQIKSGEKISVIDNLNSYYFNVYFSENYIDKIKPNTQIIAQINGQDTQ
CCCEEEEEEHHHHHHCCCCEEEEEECCCCEEEEEEECCCCHHHCCCCCEEEEEECCCCHH
LLIESVSAIVDNGKFKAKLRPIESGIAHLKRGQSIEIRIALQEENNHVLLVPTESVFSNS
HHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEEEEEEECCCEEEEEECHHHHCCC
NGDHFIYIYQDKYDRAIKTKVEVKRRNSIKTEITSGLQPSQRIVKMPDDSDKIANIIEFK
CCCEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHCCCCCCHHEEECCCCCHHHHHHHCCC
>Mature Secondary Structure
MDIKLEKKININSREKIVILSVLLILFLSCFFIYYLFTKESALLVPRERAIFYTAQFEPY
CCEEEECEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCH
QDVLVTRAITVPNESVILSSERGGKIIEIVKQSAENVIKGDVIARLSNYDFTLEATSRMA
HHHHHEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCEEEEHHHHHH
DIMEQINSLRNMRMRLEQDSRDTQLSLQEAQHQIDIISKDLKRYKVLDEKLLIAKSELER
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QADRLINWKTKSNILQKHNSRNQKSFPSQFKNIDESIILLEKMMKMIEVGIEQLVIIAPI
HHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCHHEEEEEEEC
DGTLSVLDIELGQQIKSGEKISVIDNLNSYYFNVYFSENYIDKIKPNTQIIAQINGQDTQ
CCCEEEEEEHHHHHHCCCCEEEEEECCCCEEEEEEECCCCHHHCCCCCEEEEEECCCCHH
LLIESVSAIVDNGKFKAKLRPIESGIAHLKRGQSIEIRIALQEENNHVLLVPTESVFSNS
HHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEEEEEEECCCEEEEEECHHHHCCC
NGDHFIYIYQDKYDRAIKTKVEVKRRNSIKTEITSGLQPSQRIVKMPDDSDKIANIIEFK
CCCEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHCCCCCCHHEEECCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA