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The map label for this gene is ygiK [H]

Identifier: 170024723

GI number: 170024723

Start: 2731120

End: 2732412

Strand: Direct

Name: ygiK [H]

Synonym: YPK_2498

Alternate gene names: 170024723

Gene position: 2731120-2732412 (Clockwise)

Preceding gene: 170024722

Following gene: 170024724

Centisome position: 58.24

GC content: 49.27

Gene sequence:

>1293_bases
ATGGACGCATTTATTTTAGTTTTTACCCTGGCAATTCTATTGGCTATTGGTGTCCCCGTTGCCTATGCCGTGGGCCTCAG
TGCCATTGCAGGCGCGTTTTGGATTGATTTGCCACTGGAAGCCGTGATGATCCAAATAACCAGTGGGGTCAATAAATTTT
CCCTACTGGCTATTCCCTTCTTTATTCTGGCGGGTGCCATTATGGCGGAGGGCGGTATTGCACGACGGCTGGTCAACTTT
GCCTATATCTTCGTGGGCTTTATCCGCGGTGGCCTGTCATTGGTGAATATTGTCGCCTCAACATTTTTTGGTGCTATTTC
CGGCTCTTCGGTGGCCGATACCGCCTCTATCGGCTCAGTGATGATCCCTGAGATGGATAAAAAAGGCTACCCTCGCGATT
TTGCCGCTGCCGTGACCGCCAGTGGTTCAGTACAGGCAATATTGACGCCACCCAGCCATAACTCGGTGATCTATTCACTG
GCAACCGGTGGGACGGTCTCCATCTCCGCCCTGTTCATTGCGGGGATCGTTCCAGGCCTGTTACTTAGCCTGACCTTGAT
GCTCATGTGTGTCGGCTTCGCCTATAAGCGGGGTTATCCCAAAGGTGAGCGGGTGCCATTCCGTCAGGCACTTAAAATTT
TTGTCGATACGCTATGGGGGCTGATGACGGTTGTTATCATCATGGGCGGTATCCTGTCAGGGGTGTTTACCGCGACTGAG
TCCGCGGCTATCGCCTGCTTATGGTCATTCTTCGTCACCATGTTTGTCTACCGTGATTATAAGTGGTCCGAACTGCCCAA
ACTGATGTATCGGACGGTCAAAACCGTCACTATTGTCATGATCCTGATAGGGTTTGCCGCCAGTTTCGGTGCCATCATGA
CCTACATGCAATTACCGGAACGTATCACTGATTTCTTTACCTCTATTTCTGATAATAAATACGTCATTCTGATGTGCATC
AACATCATGCTGCTGCTGATTGGTACGCTGATGGATATGGCACCGCTGATTTTGATCCTCACACCGGTATTAATGCCGGT
AACCAATTCGTTGGGCATTGACCCGGTCCATTTCGGTATGATTATGTTGATTAATCTGGGAATTGGCCTGATTACGCCGC
CAGTGGGATCGGTCTTATTCGTTGCCAGTGCGGTGAGTAAACAAAAGATAGAGCAAGTGGTAAAAGCCATGTTGCCCTTC
TACGGTGCGTTATTCTTTGTGCTGATGCTGGTGACCTATATTCCGGAAATCTCTCTGTGGTTGCCACGGATGTTTGGAAT
ATATAACGGTTAA

Upstream 100 bases:

>100_bases
ATTACCCTGATGTTTATTATCGAGCGCCTATTTTTTGGCCCGCAAACCCAGCGCCCGGTAGTGATGATCGGCAATTCATA
ATTTTGGGGAACTCTGCCTT

Downstream 100 bases:

>100_bases
GGGGAGGGTTAAGGAACCGGGTGTCTGATTAGCCCGGTTCATTATTATCTGAATCACGGTTTCAATCTGTACTACACATT
TCGCAACATTTATTTCTTTT

Product: TRAP dicarboxylate transporter subunit DctM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MDAFILVFTLAILLAIGVPVAYAVGLSAIAGAFWIDLPLEAVMIQITSGVNKFSLLAIPFFILAGAIMAEGGIARRLVNF
AYIFVGFIRGGLSLVNIVASTFFGAISGSSVADTASIGSVMIPEMDKKGYPRDFAAAVTASGSVQAILTPPSHNSVIYSL
ATGGTVSISALFIAGIVPGLLLSLTLMLMCVGFAYKRGYPKGERVPFRQALKIFVDTLWGLMTVVIIMGGILSGVFTATE
SAAIACLWSFFVTMFVYRDYKWSELPKLMYRTVKTVTIVMILIGFAASFGAIMTYMQLPERITDFFTSISDNKYVILMCI
NIMLLLIGTLMDMAPLILILTPVLMPVTNSLGIDPVHFGMIMLINLGIGLITPPVGSVLFVASAVSKQKIEQVVKAMLPF
YGALFFVLMLVTYIPEISLWLPRMFGIYNG

Sequences:

>Translated_430_residues
MDAFILVFTLAILLAIGVPVAYAVGLSAIAGAFWIDLPLEAVMIQITSGVNKFSLLAIPFFILAGAIMAEGGIARRLVNF
AYIFVGFIRGGLSLVNIVASTFFGAISGSSVADTASIGSVMIPEMDKKGYPRDFAAAVTASGSVQAILTPPSHNSVIYSL
ATGGTVSISALFIAGIVPGLLLSLTLMLMCVGFAYKRGYPKGERVPFRQALKIFVDTLWGLMTVVIIMGGILSGVFTATE
SAAIACLWSFFVTMFVYRDYKWSELPKLMYRTVKTVTIVMILIGFAASFGAIMTYMQLPERITDFFTSISDNKYVILMCI
NIMLLLIGTLMDMAPLILILTPVLMPVTNSLGIDPVHFGMIMLINLGIGLITPPVGSVLFVASAVSKQKIEQVVKAMLPF
YGALFFVLMLVTYIPEISLWLPRMFGIYNG
>Mature_430_residues
MDAFILVFTLAILLAIGVPVAYAVGLSAIAGAFWIDLPLEAVMIQITSGVNKFSLLAIPFFILAGAIMAEGGIARRLVNF
AYIFVGFIRGGLSLVNIVASTFFGAISGSSVADTASIGSVMIPEMDKKGYPRDFAAAVTASGSVQAILTPPSHNSVIYSL
ATGGTVSISALFIAGIVPGLLLSLTLMLMCVGFAYKRGYPKGERVPFRQALKIFVDTLWGLMTVVIIMGGILSGVFTATE
SAAIACLWSFFVTMFVYRDYKWSELPKLMYRTVKTVTIVMILIGFAASFGAIMTYMQLPERITDFFTSISDNKYVILMCI
NIMLLLIGTLMDMAPLILILTPVLMPVTNSLGIDPVHFGMIMLINLGIGLITPPVGSVLFVASAVSKQKIEQVVKAMLPF
YGALFFVLMLVTYIPEISLWLPRMFGIYNG

Specific function: Unknown

COG id: COG1593

COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yiaN/ygiK family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=405, Percent_Identity=38.2716049382716, Blast_Score=257, Evalue=1e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 46363; Mature: 46363

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAFILVFTLAILLAIGVPVAYAVGLSAIAGAFWIDLPLEAVMIQITSGVNKFSLLAIPF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHH
FILAGAIMAEGGIARRLVNFAYIFVGFIRGGLSLVNIVASTFFGAISGSSVADTASIGSV
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCE
MIPEMDKKGYPRDFAAAVTASGSVQAILTPPSHNSVIYSLATGGTVSISALFIAGIVPGL
ECCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
LLSLTLMLMCVGFAYKRGYPKGERVPFRQALKIFVDTLWGLMTVVIIMGGILSGVFTATE
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAAIACLWSFFVTMFVYRDYKWSELPKLMYRTVKTVTIVMILIGFAASFGAIMTYMQLPE
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RITDFFTSISDNKYVILMCINIMLLLIGTLMDMAPLILILTPVLMPVTNSLGIDPVHFGM
HHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
IMLINLGIGLITPPVGSVLFVASAVSKQKIEQVVKAMLPFYGALFFVLMLVTYIPEISLW
HHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
LPRMFGIYNG
HHHHHHCCCC
>Mature Secondary Structure
MDAFILVFTLAILLAIGVPVAYAVGLSAIAGAFWIDLPLEAVMIQITSGVNKFSLLAIPF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHH
FILAGAIMAEGGIARRLVNFAYIFVGFIRGGLSLVNIVASTFFGAISGSSVADTASIGSV
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCE
MIPEMDKKGYPRDFAAAVTASGSVQAILTPPSHNSVIYSLATGGTVSISALFIAGIVPGL
ECCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
LLSLTLMLMCVGFAYKRGYPKGERVPFRQALKIFVDTLWGLMTVVIIMGGILSGVFTATE
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAAIACLWSFFVTMFVYRDYKWSELPKLMYRTVKTVTIVMILIGFAASFGAIMTYMQLPE
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RITDFFTSISDNKYVILMCINIMLLLIGTLMDMAPLILILTPVLMPVTNSLGIDPVHFGM
HHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
IMLINLGIGLITPPVGSVLFVASAVSKQKIEQVVKAMLPFYGALFFVLMLVTYIPEISLW
HHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
LPRMFGIYNG
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]