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The map label for this gene is yjhU [H]

Identifier: 170024639

GI number: 170024639

Start: 2646208

End: 2647209

Strand: Direct

Name: yjhU [H]

Synonym: YPK_2414

Alternate gene names: 170024639

Gene position: 2646208-2647209 (Clockwise)

Preceding gene: 170024631

Following gene: 170024651

Centisome position: 56.43

GC content: 50.1

Gene sequence:

>1002_bases
TTGGAAAAAAACCACGCCAATAATATGAAGAACCGGGTGACTGAATCCTCTAAGGGCACGGCCTTGCACCTCAACCCGAT
GGTTTCTGCCGCCTGGCTCTACTACGAAGATCAACTGAAACAAAGTGATATTGCGGAGATATTGGGAGTTTCTCGCGCGA
CAGTGATCAACTATTTGAATGAGGCGCGTTTACGCGGAATAGTGGAAATCAAAATTTCCGATGAGCATTTGGCGTCGATG
CGTTTAGCACAAGCCATTATGAGAGAGTTCGGGTTAGAACGTTGTATTGTTATCCCCGATGATCAAGGGCAGCGCCCTAC
CGCATTACGTGTCGGTGAAGCGGGCGCGCAATTACTGTCTTCACTTATCGCACCAAATGACGTTTTAGGGGTTTCGTGGG
GGCAAACAGTATTGGCGCTCTCTCACGCGATCACCCGGCATCCGGTGGCTGATTTAACGGTCATTCAGATAACCGGGAGC
ATGCATTCGACCTATGAGTTCTCCCCTGAACTTTGCACTTCAAATATTGCTGACCGCTACCGCGCCCGGTGTATTAATTT
ACATGCGCCCTTTCTGCTTTCACGACCAGAAATCAAAGAGATGCTGTGTAATGAACCTGCATTAATGCCGCAGTTGGCGT
TACTCAACACCTGTACCAAAATTGTTTTCGGCGTGGGTAATACCGCAGCAGATAGCACTATTTTCAGCTCCAATACCGTG
ACGTACGCTGCGGTAGAACCCTACCGGCAACAAGGGGCGGTGGCTATTATTGCCGGGCGTTATATTGATGCCACTGGCGC
ACCTATTTATGACCATCTTGATGACAGAATGATTGGATTGACGATTGATGAGATTGATCAGATCCCAGTGCGGATCTGCG
TGGCTGGCGGTTTGAATAAAGTCGAGGCTATCCGGGCGACCCTCAAGGGCCAACACGCCACCGTGTTAGTCACTGATGAG
GTGACGGCATGTGCGTTAATGACCCGTGCGAAGACCCCGTAG

Upstream 100 bases:

>100_bases
GTTATTTCTTTTATGTTAAAAATTTGATCTGATAGACACAATTTTAAAAAAATAGCGCCGATCACTTTCTGTCGTTACTG
ACCTTATTCAGGACATCGTT

Downstream 100 bases:

>100_bases
GCTGTGTGTGCTACGGGGTTAAGGCCGATTACGTATTCAACTGGAACAGAGACAAACCCTGCATATTGGTGAAGGTGGTA
TACGAGGCTTGTAGCGCCGC

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MEKNHANNMKNRVTESSKGTALHLNPMVSAAWLYYEDQLKQSDIAEILGVSRATVINYLNEARLRGIVEIKISDEHLASM
RLAQAIMREFGLERCIVIPDDQGQRPTALRVGEAGAQLLSSLIAPNDVLGVSWGQTVLALSHAITRHPVADLTVIQITGS
MHSTYEFSPELCTSNIADRYRARCINLHAPFLLSRPEIKEMLCNEPALMPQLALLNTCTKIVFGVGNTAADSTIFSSNTV
TYAAVEPYRQQGAVAIIAGRYIDATGAPIYDHLDDRMIGLTIDEIDQIPVRICVAGGLNKVEAIRATLKGQHATVLVTDE
VTACALMTRAKTP

Sequences:

>Translated_333_residues
MEKNHANNMKNRVTESSKGTALHLNPMVSAAWLYYEDQLKQSDIAEILGVSRATVINYLNEARLRGIVEIKISDEHLASM
RLAQAIMREFGLERCIVIPDDQGQRPTALRVGEAGAQLLSSLIAPNDVLGVSWGQTVLALSHAITRHPVADLTVIQITGS
MHSTYEFSPELCTSNIADRYRARCINLHAPFLLSRPEIKEMLCNEPALMPQLALLNTCTKIVFGVGNTAADSTIFSSNTV
TYAAVEPYRQQGAVAIIAGRYIDATGAPIYDHLDDRMIGLTIDEIDQIPVRICVAGGLNKVEAIRATLKGQHATVLVTDE
VTACALMTRAKTP
>Mature_333_residues
MEKNHANNMKNRVTESSKGTALHLNPMVSAAWLYYEDQLKQSDIAEILGVSRATVINYLNEARLRGIVEIKISDEHLASM
RLAQAIMREFGLERCIVIPDDQGQRPTALRVGEAGAQLLSSLIAPNDVLGVSWGQTVLALSHAITRHPVADLTVIQITGS
MHSTYEFSPELCTSNIADRYRARCINLHAPFLLSRPEIKEMLCNEPALMPQLALLNTCTKIVFGVGNTAADSTIFSSNTV
TYAAVEPYRQQGAVAIIAGRYIDATGAPIYDHLDDRMIGLTIDEIDQIPVRICVAGGLNKVEAIRATLKGQHATVLVTDE
VTACALMTRAKTP

Specific function: Unknown

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI87082414, Length=319, Percent_Identity=33.5423197492163, Blast_Score=188, Evalue=4e-49,
Organism=Escherichia coli, GI1787791, Length=304, Percent_Identity=29.6052631578947, Blast_Score=122, Evalue=3e-29,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012287
- InterPro:   IPR007324 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 36349; Mature: 36349

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKNHANNMKNRVTESSKGTALHLNPMVSAAWLYYEDQLKQSDIAEILGVSRATVINYLN
CCCCCCCHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHH
EARLRGIVEIKISDEHLASMRLAQAIMREFGLERCIVIPDDQGQRPTALRVGEAGAQLLS
HHHHCEEEEEEECHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECHHHHHHHH
SLIAPNDVLGVSWGQTVLALSHAITRHPVADLTVIQITGSMHSTYEFSPELCTSNIADRY
HHHCCCCEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEECCHHHHHHHHHHHH
RARCINLHAPFLLSRPEIKEMLCNEPALMPQLALLNTCTKIVFGVGNTAADSTIFSSNTV
HHHEEEECCCCEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCE
TYAAVEPYRQQGAVAIIAGRYIDATGAPIYDHLDDRMIGLTIDEIDQIPVRICVAGGLNK
EEEEECCHHHCCCEEEEECCEECCCCCCHHHCCCCCEEEEEHHHHCCCCEEEEECCCCHH
VEAIRATLKGQHATVLVTDEVTACALMTRAKTP
HHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCC
>Mature Secondary Structure
MEKNHANNMKNRVTESSKGTALHLNPMVSAAWLYYEDQLKQSDIAEILGVSRATVINYLN
CCCCCCCHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHH
EARLRGIVEIKISDEHLASMRLAQAIMREFGLERCIVIPDDQGQRPTALRVGEAGAQLLS
HHHHCEEEEEEECHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECHHHHHHHH
SLIAPNDVLGVSWGQTVLALSHAITRHPVADLTVIQITGSMHSTYEFSPELCTSNIADRY
HHHCCCCEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEECCHHHHHHHHHHHH
RARCINLHAPFLLSRPEIKEMLCNEPALMPQLALLNTCTKIVFGVGNTAADSTIFSSNTV
HHHEEEECCCCEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCE
TYAAVEPYRQQGAVAIIAGRYIDATGAPIYDHLDDRMIGLTIDEIDQIPVRICVAGGLNK
EEEEECCHHHCCCEEEEECCEECCCCCCHHHCCCCCEEEEEHHHHCCCCEEEEECCCCHH
VEAIRATLKGQHATVLVTDEVTACALMTRAKTP
HHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]